Wall clock time and date at job start Tue Mar 31 2020 13:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99984 * 2 1 4 4 N 1.46499 * 109.47069 * 124.99991 * 3 2 1 5 5 C 1.46505 * 120.00127 * 275.00354 * 4 3 2 6 6 C 1.50704 * 109.46983 * 275.00060 * 5 4 3 7 7 H 1.08006 * 119.99738 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99702 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99450 * 180.02562 * 8 6 5 10 10 Si 1.86790 * 120.00486 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47016 * 89.99961 * 10 8 6 12 12 H 1.48495 * 109.47737 * 209.99973 * 10 8 6 13 13 H 1.48496 * 109.47299 * 330.00185 * 10 8 6 14 14 S 1.65595 * 120.00084 * 95.00022 * 4 3 2 15 15 O 1.42100 * 106.40541 * 336.46456 * 14 4 3 16 16 O 1.42099 * 106.40810 * 203.53619 * 14 4 3 17 17 C 1.76205 * 107.21570 * 90.00058 * 14 4 3 18 18 C 1.38437 * 119.91087 * 270.23489 * 17 14 4 19 19 C 1.38380 * 120.34481 * 180.28311 * 18 17 14 20 20 C 1.37914 * 120.17182 * 359.47977 * 19 18 17 21 21 C 1.39828 * 119.82356 * 0.26395 * 20 19 18 22 22 C 1.47168 * 120.17116 * 179.97438 * 21 20 19 23 23 C 1.50703 * 119.99720 * 359.97438 * 22 21 20 24 24 O 1.21251 * 120.00499 * 179.97438 * 22 21 20 25 25 C 1.37865 * 119.91606 * 90.00056 * 17 14 4 26 26 H 1.08003 * 119.99376 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00196 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00660 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46730 * 5.00151 * 3 2 1 30 30 H 1.08994 * 109.47140 * 245.00503 * 3 2 1 31 31 H 1.08999 * 109.47147 * 34.99577 * 5 4 3 32 32 H 1.08993 * 109.47306 * 155.00376 * 5 4 3 33 33 H 0.97002 * 119.99533 * 180.02562 * 9 8 6 34 34 H 1.07991 * 119.82663 * 0.03941 * 18 17 14 35 35 H 1.08002 * 119.91533 * 179.76681 * 19 18 17 36 36 H 1.07999 * 120.08530 * 180.23581 * 20 19 18 37 37 H 1.09002 * 109.47342 * 0.02562 * 23 22 21 38 38 H 1.09007 * 109.46784 * 120.00164 * 23 22 21 39 39 H 1.09000 * 109.47181 * 239.99767 * 23 22 21 40 40 H 1.08000 * 120.08355 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5284 1.7621 2.4523 6 6 2.5990 3.2646 2.5451 7 1 2.9553 3.8414 1.7043 8 6 2.2088 3.9029 3.7032 9 7 2.2700 5.2142 3.7839 10 14 1.5920 2.9054 5.1570 11 1 2.7362 2.5488 6.0338 12 1 0.6096 3.7092 5.9278 13 1 0.9397 1.6652 4.6655 14 16 4.5712 0.8760 0.9173 15 8 4.5924 0.0264 -0.2215 16 8 5.0504 0.4765 2.1941 17 6 5.4767 2.3218 0.4763 18 6 5.6075 2.6748 -0.8559 19 6 6.3216 3.8051 -1.2128 20 6 6.8999 4.5950 -0.2414 21 6 6.7678 4.2481 1.1067 22 6 7.3823 5.0852 2.1495 23 6 8.1568 6.3197 1.7655 24 8 7.2655 4.7818 3.3176 25 6 6.0490 3.1011 1.4590 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.4983 1.4371 2.5983 32 1 3.1613 1.3205 3.2221 33 1 1.9958 5.6632 4.5988 34 1 5.1532 2.0627 -1.6209 35 1 6.4224 4.0719 -2.2545 36 1 7.4537 5.4790 -0.5213 37 1 8.1526 6.4285 0.6809 38 1 7.6933 7.1953 2.2200 39 1 9.1842 6.2283 2.1179 40 1 5.9425 2.8267 2.4981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343234416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:12 Heat of formation + Delta-G solvation = -53.475074 kcal Electronic energy + Delta-G solvation = -25779.497140 eV Core-core repulsion = 22073.577719 eV Total energy + Delta-G solvation = -3705.919421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.82133 -37.97766 -36.87956 -36.51488 -35.40163 -33.22415 -32.16941 -32.00927 -31.03459 -29.32185 -28.12323 -25.05160 -23.90133 -22.89671 -21.90178 -20.25573 -19.81144 -18.26004 -17.57157 -16.96070 -16.86537 -16.06976 -15.90241 -15.50044 -15.36976 -14.84479 -14.65789 -14.23953 -14.01781 -13.82890 -13.72124 -13.16346 -12.88859 -12.65501 -12.54847 -12.22552 -12.01279 -11.99218 -11.93344 -11.71557 -11.54017 -11.43798 -11.37396 -11.03967 -10.77932 -10.58989 -10.38753 -10.21433 -9.64277 -9.57048 -9.31481 -9.17388 -8.91231 -8.63546 -8.20661 -6.15309 -4.16457 0.60029 0.89388 1.21779 2.44573 2.53139 3.28352 3.34710 3.38244 3.46751 3.75776 4.10866 4.20374 4.36599 4.66314 4.78734 4.93689 4.98891 5.16015 5.16612 5.21308 5.35903 5.40980 5.41136 5.53076 5.55740 5.69292 5.88517 5.94604 6.03000 6.16526 6.20598 6.25813 6.28557 6.32675 6.82066 6.84615 6.86870 6.92273 7.08704 7.31441 7.52102 7.69439 8.39406 8.86687 9.45191 10.97026 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.006765 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.197649 B = 4137.945039 C = 5953.647714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 C 0.155 3.845 4 N -0.971 5.971 5 C 0.212 3.788 6 C -0.546 4.546 7 H 0.079 0.921 8 C 0.080 3.920 9 N -0.890 5.890 10 Si 0.866 3.134 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.262 1.262 14 S 2.689 3.311 15 O -0.971 6.971 16 O -0.956 6.956 17 C -0.678 4.678 18 C 0.004 3.996 19 C -0.159 4.159 20 C -0.029 4.029 21 C -0.190 4.190 22 C 0.392 3.608 23 C -0.199 4.199 24 O -0.445 6.445 25 C 0.064 3.936 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -1.643 -11.323 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.183 4.183 3 C 0.029 3.971 4 N -0.808 5.808 5 C 0.089 3.911 6 C -0.585 4.585 7 H 0.097 0.903 8 C -0.124 4.124 9 N -0.527 5.527 10 Si 0.692 3.308 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.187 1.187 14 S 2.779 3.221 15 O -0.961 6.961 16 O -0.946 6.946 17 C -0.763 4.763 18 C -0.015 4.015 19 C -0.178 4.178 20 C -0.047 4.047 21 C -0.192 4.192 22 C 0.269 3.731 23 C -0.255 4.255 24 O -0.319 6.319 25 C 0.045 3.955 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.610 -2.444 -10.464 12.616 hybrid contribution -0.368 0.598 0.566 0.902 sum 6.241 -1.847 -9.898 11.846 Atomic orbital electron populations 1.23816 0.95796 1.01720 1.01052 1.23451 0.96361 0.99260 0.99255 1.20261 0.93188 0.95772 0.87831 1.57168 1.23910 1.82567 1.17197 1.19681 0.96739 0.96398 0.78248 1.21392 1.45642 0.89688 1.01731 0.90264 1.24816 0.94673 0.94741 0.98187 1.69885 1.47180 1.07742 1.27926 0.86994 0.79573 0.80757 0.83456 1.19541 1.20998 1.18662 1.01998 0.72920 0.73940 0.73273 1.93525 1.86888 1.63252 1.52483 1.93559 1.79882 1.80562 1.40605 1.31201 1.19011 1.25262 1.00812 1.21120 0.91908 0.94375 0.94114 1.21158 1.00694 0.96179 0.99761 1.21721 0.93867 0.97277 0.91826 1.20634 1.04833 0.98820 0.94899 1.22391 0.77263 0.85385 0.88050 1.22219 1.01752 0.97785 1.03783 1.90594 1.50861 1.69524 1.20906 1.21208 0.85439 0.89012 0.99886 0.88782 0.88259 0.87355 0.89027 0.90428 0.93959 0.93675 0.92485 0.84257 0.84769 0.84491 0.90080 0.88586 0.88942 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 29.02 0.42 -2.06 16 2 C -0.16 -2.47 9.84 -36.02 -0.35 -2.83 16 3 C 0.16 2.56 5.78 -5.19 -0.03 2.53 16 4 N -0.97 -19.14 2.75 -116.94 -0.32 -19.46 16 5 C 0.21 4.91 4.50 -5.19 -0.02 4.89 16 6 C -0.55 -14.46 9.94 -34.44 -0.34 -14.81 16 7 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 8 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 9 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 10 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 14 S 2.69 52.05 5.64 -107.50 -0.61 51.44 16 15 O -0.97 -18.25 16.25 -57.17 -0.93 -19.18 16 16 O -0.96 -21.30 15.82 -57.17 -0.90 -22.20 16 17 C -0.68 -12.18 5.97 -39.64 -0.24 -12.41 16 18 C 0.00 0.06 9.52 -39.46 -0.38 -0.32 16 19 C -0.16 -1.94 10.03 -39.65 -0.40 -2.33 16 20 C -0.03 -0.36 9.45 -39.11 -0.37 -0.73 16 21 C -0.19 -3.14 5.87 -105.07 -0.62 -3.75 16 22 C 0.39 6.38 7.23 -30.68 -0.22 6.16 16 23 C -0.20 -2.10 10.19 36.01 0.37 -1.73 16 24 O -0.44 -9.21 17.09 5.58 0.10 -9.11 16 25 C 0.06 1.24 9.07 -39.11 -0.35 0.89 16 26 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 27 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.52 7.76 -51.93 -0.40 1.11 16 30 H 0.08 1.10 7.61 -51.93 -0.40 0.70 16 31 H 0.04 0.96 7.16 -51.93 -0.37 0.59 16 32 H 0.05 1.09 6.34 -51.93 -0.33 0.76 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.14 1.71 7.61 -52.49 -0.40 1.31 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.15 5.93 -52.49 -0.31 0.84 16 37 H 0.08 0.62 5.61 -51.93 -0.29 0.33 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.15 3.30 7.20 -52.49 -0.38 2.93 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -34.30 356.79 -8.82 -43.11 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.99 Total: 3.52 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.64 Total: -24.38 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.45 Total: -44.99 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.74 Total: -50.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 52.05 SS G_CDS: -0.61 Total: 51.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.30 -8.82 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343234416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.361 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds