Wall clock time and date at job start Tue Mar 31 2020 13:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99984 * 2 1 4 4 N 1.46499 * 109.47069 * 124.99991 * 3 2 1 5 5 C 1.46505 * 120.00127 * 275.00354 * 4 3 2 6 6 C 1.50704 * 109.46983 * 275.00060 * 5 4 3 7 7 H 1.08006 * 119.99738 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99702 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99450 * 180.02562 * 8 6 5 10 10 Si 1.86790 * 120.00486 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47016 * 89.99961 * 10 8 6 12 12 H 1.48495 * 109.47737 * 209.99973 * 10 8 6 13 13 H 1.48496 * 109.47299 * 330.00185 * 10 8 6 14 14 S 1.65595 * 120.00084 * 95.00022 * 4 3 2 15 15 O 1.42100 * 106.40541 * 336.46456 * 14 4 3 16 16 O 1.42099 * 106.40810 * 203.53619 * 14 4 3 17 17 C 1.76205 * 107.21570 * 90.00058 * 14 4 3 18 18 C 1.38437 * 119.91087 * 270.23489 * 17 14 4 19 19 C 1.38380 * 120.34481 * 180.28311 * 18 17 14 20 20 C 1.37914 * 120.17182 * 359.47977 * 19 18 17 21 21 C 1.39828 * 119.82356 * 0.26395 * 20 19 18 22 22 C 1.47168 * 120.17116 * 179.97438 * 21 20 19 23 23 C 1.50703 * 119.99720 * 359.97438 * 22 21 20 24 24 O 1.21251 * 120.00499 * 179.97438 * 22 21 20 25 25 C 1.37865 * 119.91606 * 90.00056 * 17 14 4 26 26 H 1.08003 * 119.99376 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00196 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00660 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46730 * 5.00151 * 3 2 1 30 30 H 1.08994 * 109.47140 * 245.00503 * 3 2 1 31 31 H 1.08999 * 109.47147 * 34.99577 * 5 4 3 32 32 H 1.08993 * 109.47306 * 155.00376 * 5 4 3 33 33 H 0.97002 * 119.99533 * 180.02562 * 9 8 6 34 34 H 1.07991 * 119.82663 * 0.03941 * 18 17 14 35 35 H 1.08002 * 119.91533 * 179.76681 * 19 18 17 36 36 H 1.07999 * 120.08530 * 180.23581 * 20 19 18 37 37 H 1.09002 * 109.47342 * 0.02562 * 23 22 21 38 38 H 1.09007 * 109.46784 * 120.00164 * 23 22 21 39 39 H 1.09000 * 109.47181 * 239.99767 * 23 22 21 40 40 H 1.08000 * 120.08355 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5284 1.7621 2.4523 6 6 2.5990 3.2646 2.5451 7 1 2.9553 3.8414 1.7043 8 6 2.2088 3.9029 3.7032 9 7 2.2700 5.2142 3.7839 10 14 1.5920 2.9054 5.1570 11 1 2.7362 2.5488 6.0338 12 1 0.6096 3.7092 5.9278 13 1 0.9397 1.6652 4.6655 14 16 4.5712 0.8760 0.9173 15 8 4.5924 0.0264 -0.2215 16 8 5.0504 0.4765 2.1941 17 6 5.4767 2.3218 0.4763 18 6 5.6075 2.6748 -0.8559 19 6 6.3216 3.8051 -1.2128 20 6 6.8999 4.5950 -0.2414 21 6 6.7678 4.2481 1.1067 22 6 7.3823 5.0852 2.1495 23 6 8.1568 6.3197 1.7655 24 8 7.2655 4.7818 3.3176 25 6 6.0490 3.1011 1.4590 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.4983 1.4371 2.5983 32 1 3.1613 1.3205 3.2221 33 1 1.9958 5.6632 4.5988 34 1 5.1532 2.0627 -1.6209 35 1 6.4224 4.0719 -2.2545 36 1 7.4537 5.4790 -0.5213 37 1 8.1526 6.4285 0.6809 38 1 7.6933 7.1953 2.2200 39 1 9.1842 6.2283 2.1179 40 1 5.9425 2.8267 2.4981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343234416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:11 Heat of formation + Delta-G solvation = -77.662614 kcal Electronic energy + Delta-G solvation = -25780.545990 eV Core-core repulsion = 22073.577719 eV Total energy + Delta-G solvation = -3706.968272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06541 -39.25000 -38.44672 -38.04007 -37.00344 -34.98215 -33.69192 -33.35564 -32.22278 -30.33828 -29.94351 -26.55365 -25.06918 -24.20321 -23.70415 -21.49689 -21.02425 -19.71132 -19.08878 -18.78207 -18.46505 -17.56035 -17.15044 -16.83404 -16.62368 -16.22325 -16.09256 -15.89620 -15.41289 -15.18467 -14.88082 -14.65335 -14.52779 -13.99217 -13.84536 -13.72304 -13.55664 -13.36902 -13.25670 -13.11624 -13.05636 -12.85956 -12.72413 -12.53178 -12.44484 -12.12003 -11.94102 -11.83429 -11.69914 -10.85383 -10.80505 -10.51725 -10.32595 -10.12817 -9.84010 -8.32175 -6.35330 -0.68668 -0.49379 -0.07140 1.25595 1.30949 1.36174 1.37837 1.42135 2.02408 2.31010 2.48454 2.74070 2.95611 3.03865 3.30822 3.74731 3.84244 3.87245 3.88958 4.11869 4.13820 4.31614 4.39671 4.40952 4.62122 4.67461 4.71750 4.79230 4.84627 4.91959 4.93746 5.04878 5.09844 5.11195 5.24042 5.25350 5.43301 5.61076 5.73167 5.76466 5.94581 6.26005 6.48802 6.68222 7.28514 8.82974 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.006765 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.197649 B = 4137.945039 C = 5953.647714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.189 4.189 3 C 0.147 3.853 4 N -0.976 5.976 5 C 0.221 3.779 6 C -0.533 4.533 7 H 0.052 0.948 8 C 0.024 3.976 9 N -0.934 5.934 10 Si 0.916 3.084 11 H -0.280 1.280 12 H -0.276 1.276 13 H -0.237 1.237 14 S 2.695 3.305 15 O -0.967 6.967 16 O -0.997 6.997 17 C -0.693 4.693 18 C -0.002 4.002 19 C -0.143 4.143 20 C -0.009 4.009 21 C -0.215 4.215 22 C 0.384 3.616 23 C -0.188 4.188 24 O -0.511 6.511 25 C 0.023 3.977 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.165 0.835 35 H 0.190 0.810 36 H 0.192 0.808 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 -1.128 -14.635 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.023 3.977 4 N -0.813 5.813 5 C 0.097 3.903 6 C -0.572 4.572 7 H 0.070 0.930 8 C -0.176 4.176 9 N -0.573 5.573 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.201 1.201 13 H -0.160 1.160 14 S 2.788 3.212 15 O -0.957 6.957 16 O -0.988 6.988 17 C -0.781 4.781 18 C -0.021 4.021 19 C -0.161 4.161 20 C -0.026 4.026 21 C -0.217 4.217 22 C 0.265 3.735 23 C -0.244 4.244 24 O -0.390 6.390 25 C 0.003 3.997 26 H 0.135 0.865 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.183 0.817 35 H 0.207 0.793 36 H 0.209 0.791 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.696 -1.977 -13.818 15.482 hybrid contribution -0.346 0.479 1.413 1.531 sum 6.350 -1.498 -12.406 14.017 Atomic orbital electron populations 1.24065 0.95198 1.03062 0.98014 1.23372 0.97030 0.98419 1.02025 1.20521 0.93088 0.96629 0.87472 1.57102 1.24783 1.82506 1.16865 1.19366 0.97031 0.93927 0.79994 1.21568 1.43758 0.91347 1.00568 0.92989 1.25590 0.95397 0.95619 1.00965 1.70004 1.49233 1.09352 1.28745 0.86173 0.79019 0.80520 0.80283 1.20567 1.20085 1.15968 1.01553 0.72720 0.74394 0.72577 1.93512 1.86864 1.63660 1.51654 1.93500 1.80533 1.81880 1.42862 1.30833 1.20075 1.24801 1.02430 1.21605 0.92043 0.95726 0.92733 1.21830 0.97898 0.94100 1.02312 1.22334 0.92429 0.98372 0.89475 1.20976 1.05167 0.98149 0.97425 1.23426 0.76328 0.86662 0.87043 1.22271 1.01555 0.94174 1.06399 1.90570 1.53554 1.71442 1.23392 1.21016 0.88722 0.91731 0.98226 0.86513 0.87778 0.87429 0.89459 0.88215 0.92817 0.95090 0.92552 0.81723 0.79280 0.79093 0.86116 0.88249 0.86881 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 14.32 67.79 0.97 -3.06 16 2 C -0.19 -5.44 9.84 25.65 0.25 -5.19 16 3 C 0.15 4.75 5.78 85.64 0.50 5.25 16 4 N -0.98 -39.20 2.75 -523.90 -1.44 -40.64 16 5 C 0.22 10.52 4.50 85.63 0.39 10.90 16 6 C -0.53 -29.41 9.94 25.60 0.25 -29.16 16 7 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 8 C 0.02 1.37 5.47 84.65 0.46 1.83 16 9 N -0.93 -57.36 13.96 21.45 0.30 -57.06 16 10 Si 0.92 44.32 27.47 68.60 1.88 46.20 16 11 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 14 S 2.69 107.82 5.64 -56.49 -0.32 107.50 16 15 O -0.97 -36.05 16.25 -128.00 -2.08 -38.13 16 16 O -1.00 -47.61 15.82 -128.00 -2.03 -49.63 16 17 C -0.69 -25.47 5.97 22.23 0.13 -25.34 16 18 C 0.00 -0.05 9.52 22.35 0.21 0.16 16 19 C -0.14 -2.79 10.03 22.23 0.22 -2.57 16 20 C -0.01 -0.18 9.45 22.58 0.21 0.03 16 21 C -0.22 -7.13 5.87 -20.15 -0.12 -7.24 16 22 C 0.38 12.78 7.23 28.03 0.20 12.98 16 23 C -0.19 -3.48 10.19 71.24 0.73 -2.76 16 24 O -0.51 -22.95 17.09 -2.94 -0.05 -23.00 16 25 C 0.02 0.95 9.07 22.58 0.20 1.16 16 26 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 27 H 0.10 2.43 7.84 -2.91 -0.02 2.41 16 28 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 29 H 0.09 2.85 7.76 -2.39 -0.02 2.83 16 30 H 0.10 2.69 7.61 -2.39 -0.02 2.67 16 31 H 0.05 2.42 7.16 -2.39 -0.02 2.40 16 32 H 0.03 1.57 6.34 -2.39 -0.02 1.55 16 33 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 34 H 0.17 3.48 7.61 -2.92 -0.02 3.45 16 35 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.19 1.87 5.93 -2.91 -0.02 1.85 16 37 H 0.12 1.20 5.61 -2.39 -0.01 1.18 16 38 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 5.22 7.20 -2.91 -0.02 5.20 16 Total: -1.00 -82.84 356.79 1.88 -80.95 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.00 Total: 16.80 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 4.62 Total: -42.99 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -1.14 Total: -97.69 kcal Atomic # 8 Polarization: -106.61 SS G_CDS: -4.16 Total: -110.77 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Atomic # 16 Polarization: 107.82 SS G_CDS: -0.32 Total: 107.50 kcal Total: -82.84 1.88 -80.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343234416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.292 kcal (2) G-P(sol) polarization free energy of solvation -82.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds