Wall clock time and date at job start Tue Mar 31 2020 14:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00339 * 2 1 4 4 H 1.08995 * 109.39113 * 329.88668 * 3 2 1 5 5 C 1.53444 * 108.90652 * 90.24394 * 3 2 1 6 6 C 1.53412 * 108.00627 * 168.40019 * 5 3 2 7 7 O 1.42828 * 108.35723 * 295.01344 * 6 5 3 8 8 C 1.35921 * 117.84462 * 49.23365 * 7 6 5 9 9 C 1.39721 * 118.48963 * 162.77726 * 8 7 6 10 10 N 1.40116 * 119.95641 * 359.58577 * 9 8 7 11 11 C 1.34786 * 119.99775 * 214.42960 * 10 9 8 12 12 O 1.21290 * 119.99641 * 355.51447 * 11 10 9 13 13 C 1.50700 * 120.00019 * 175.51475 * 11 10 9 14 14 S 1.80999 * 109.47075 * 179.97438 * 13 11 10 15 15 C 1.76198 * 99.99833 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00411 * 359.97438 * 15 14 13 17 17 C 1.38800 * 120.00083 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00365 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99664 * 359.71969 * 17 15 14 20 20 H 1.48500 * 109.47005 * 270.27565 * 19 17 15 21 21 H 1.48494 * 109.47122 * 30.27786 * 19 17 15 22 22 H 1.48500 * 109.46676 * 150.27886 * 19 17 15 23 23 C 1.38530 * 120.08379 * 179.31257 * 9 8 7 24 24 C 1.38238 * 119.87747 * 0.25119 * 23 9 8 25 25 C 1.38090 * 120.04539 * 0.09276 * 24 23 9 26 26 C 1.38169 * 121.83797 * 342.82199 * 8 7 6 27 27 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46900 * 300.00086 * 1 2 3 29 29 H 1.08999 * 109.47127 * 59.99469 * 1 2 3 30 30 H 1.08997 * 110.14835 * 48.61615 * 5 3 2 31 31 H 1.09001 * 109.58564 * 287.85394 * 5 3 2 32 32 H 1.09003 * 109.68846 * 175.29996 * 6 5 3 33 33 H 1.08995 * 109.71829 * 54.75064 * 6 5 3 34 34 H 0.96999 * 120.00522 * 34.42589 * 10 9 8 35 35 H 1.08998 * 109.46709 * 59.99788 * 13 11 10 36 36 H 1.09000 * 109.47005 * 300.00207 * 13 11 10 37 37 H 0.97000 * 120.00366 * 179.71914 * 18 17 15 38 38 H 1.07996 * 120.06212 * 180.26840 * 23 9 8 39 39 H 1.08004 * 119.98158 * 180.02562 * 24 23 9 40 40 H 1.07996 * 119.77357 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9978 -0.5158 5 6 2.2182 1.7571 1.4516 6 6 3.0986 3.0133 1.4359 7 8 4.3866 2.6537 0.9342 8 6 4.4410 1.9357 -0.2187 9 6 5.6506 1.8856 -0.9162 10 7 6.7691 2.5737 -0.4275 11 6 7.6489 3.1259 -1.2864 12 8 7.5173 2.9584 -2.4804 13 6 8.7960 3.9514 -0.7631 14 16 9.7919 4.5488 -2.1513 15 6 11.0241 5.4548 -1.2763 16 1 10.9942 5.5042 -0.1978 17 6 12.0325 6.1060 -1.9731 18 7 12.9527 6.7833 -1.3195 19 14 12.0879 6.0154 -3.8381 20 1 12.8936 4.8389 -4.2528 21 1 10.7073 5.8816 -4.3684 22 1 12.7068 7.2536 -4.3756 23 6 5.7470 1.1520 -2.0873 24 6 4.6426 0.4735 -2.5677 25 6 3.4451 0.5286 -1.8822 26 6 3.3392 1.2628 -0.7109 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 2.7109 0.9703 2.0227 31 1 1.2540 1.9900 1.9035 32 1 3.1955 3.4065 2.4480 33 1 2.6506 3.7684 0.7901 34 1 6.9102 2.6527 0.5289 35 1 9.4159 3.3384 -0.1088 36 1 8.4061 4.8012 -0.2028 37 1 13.6598 7.2350 -1.8062 38 1 6.6833 1.1100 -2.6239 39 1 4.7160 -0.0993 -3.4804 40 1 2.5852 -0.0035 -2.2613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344912151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:24 Heat of formation + Delta-G solvation = -110.531302 kcal Electronic energy + Delta-G solvation = -24363.658268 eV Core-core repulsion = 20655.264703 eV Total energy + Delta-G solvation = -3708.393565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15714 -40.82442 -38.82646 -38.40197 -35.90795 -34.67526 -33.62522 -31.80457 -31.57249 -29.47563 -27.86348 -27.80055 -25.83969 -24.85229 -23.68592 -21.97914 -20.95558 -20.00005 -19.12113 -18.59265 -18.05648 -17.58599 -17.14703 -17.04637 -16.62566 -16.58864 -16.22051 -15.80992 -15.69797 -15.53927 -15.09292 -14.85551 -14.75773 -14.19561 -13.96769 -13.76638 -13.70223 -13.35576 -13.23377 -13.02630 -12.89371 -12.68532 -12.51243 -12.02619 -11.90772 -11.87042 -11.83372 -11.38048 -11.17300 -10.89057 -10.66784 -10.56186 -9.51270 -9.03009 -8.88704 -8.51613 -6.22890 0.15968 0.28712 0.94186 1.31783 1.42481 1.47968 1.54027 2.04532 2.21597 2.25197 2.58939 2.68352 2.86503 2.93226 3.54765 3.64116 3.66711 3.77589 4.00799 4.10874 4.17993 4.25002 4.33877 4.38288 4.42701 4.44173 4.54170 4.58462 4.63302 4.65428 4.88692 4.91631 5.02193 5.08998 5.26553 5.43889 5.51670 5.70670 5.77898 6.11743 6.18755 6.27944 6.36926 6.93142 7.02534 8.60714 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.030692 B = 0.002588 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.073866 B =10816.136103 C =11502.398420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.139 3.861 4 H 0.091 0.909 5 C -0.174 4.174 6 C 0.058 3.942 7 O -0.329 6.329 8 C 0.116 3.884 9 C 0.098 3.902 10 N -0.650 5.650 11 C 0.537 3.463 12 O -0.538 6.538 13 C -0.109 4.109 14 S -0.167 6.167 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.045 3.955 18 N -0.916 5.916 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.236 1.236 22 H -0.259 1.259 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.076 4.076 26 C -0.161 4.161 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.425 0.575 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.277 0.723 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.097 -13.130 5.902 32.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.081 3.919 4 H 0.109 0.891 5 C -0.212 4.212 6 C -0.016 4.016 7 O -0.243 6.243 8 C 0.069 3.931 9 C 0.004 3.996 10 N -0.297 5.297 11 C 0.324 3.676 12 O -0.414 6.414 13 C -0.260 4.260 14 S 0.060 5.940 15 C -0.677 4.677 16 H 0.081 0.919 17 C -0.160 4.160 18 N -0.554 5.554 19 Si 0.736 3.264 20 H -0.186 1.186 21 H -0.160 1.160 22 H -0.183 1.183 23 C -0.124 4.124 24 C -0.156 4.156 25 C -0.095 4.095 26 C -0.163 4.163 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.092 0.908 34 H 0.263 0.737 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.857 -13.338 4.093 32.053 hybrid contribution 0.665 0.682 1.280 1.595 sum -28.193 -12.656 5.373 31.367 Atomic orbital electron populations 1.23041 0.79152 1.04050 1.01203 1.87974 1.21552 1.26812 1.95091 1.20851 0.90523 0.85825 0.94703 0.89087 1.22772 1.02910 0.98613 0.96858 1.23282 0.80418 0.96151 1.01764 1.85923 1.33466 1.68807 1.36131 1.18353 0.91752 0.95297 0.87729 1.17396 0.86120 0.99213 0.96888 1.43087 1.22326 1.53314 1.10981 1.20138 0.82644 0.78656 0.86158 1.90675 1.73886 1.60061 1.16816 1.23228 0.97465 1.02866 1.02449 1.84671 1.31092 1.65894 1.12380 1.22458 1.13064 1.36608 0.95611 0.91863 1.25569 0.93793 0.93203 1.03475 1.70013 1.14424 1.32724 1.38250 0.85864 0.81330 0.79190 0.79968 1.18642 1.16010 1.18347 1.21247 1.00763 0.95107 0.95309 1.21193 0.92148 1.00818 1.01485 1.21079 0.98295 0.96897 0.93229 1.19790 0.95034 1.02727 0.98738 0.88518 0.92582 0.92911 0.90507 0.86877 0.84613 0.90826 0.73662 0.86378 0.86540 0.91346 0.85415 0.83493 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.81 113.37 1.23 1.40 16 2 O -0.40 -6.12 9.62 -148.98 -1.43 -7.56 16 3 C 0.14 2.06 2.76 30.02 0.08 2.14 16 4 H 0.09 1.05 7.78 -2.39 -0.02 1.03 16 5 C -0.17 -2.00 5.81 30.88 0.18 -1.82 16 6 C 0.06 0.74 7.02 72.12 0.51 1.25 16 7 O -0.33 -7.02 9.72 -92.66 -0.90 -7.92 16 8 C 0.12 2.86 6.49 22.61 0.15 3.01 16 9 C 0.10 2.85 6.33 38.24 0.24 3.09 16 10 N -0.65 -18.82 5.16 -302.95 -1.56 -20.38 16 11 C 0.54 19.39 7.69 87.66 0.67 20.06 16 12 O -0.54 -23.01 13.27 -3.06 -0.04 -23.05 16 13 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 14 S -0.17 -8.42 18.55 -56.49 -1.05 -9.47 16 15 C -0.53 -30.86 10.04 67.95 0.68 -30.17 16 16 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 17 C 0.05 2.65 5.50 84.86 0.47 3.12 16 18 N -0.92 -55.87 13.97 21.65 0.30 -55.57 16 19 Si 0.91 45.00 27.74 68.60 1.90 46.90 16 20 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 22 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 23 C -0.10 -3.07 8.69 22.34 0.19 -2.88 16 24 C -0.14 -3.24 10.04 22.23 0.22 -3.02 16 25 C -0.08 -1.60 9.30 22.33 0.21 -1.39 16 26 C -0.16 -3.45 5.57 -19.76 -0.11 -3.56 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.05 0.33 8.08 -2.39 -0.02 0.31 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.43 9.96 8.48 -92.71 -0.79 9.17 16 35 H 0.12 4.11 8.14 -2.40 -0.02 4.09 16 36 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.13 4.31 6.19 -2.91 -0.02 4.29 16 39 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.15 2.41 7.75 -2.91 -0.02 2.39 16 Total: -1.00 -74.96 349.00 2.63 -72.34 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.25 Total: 17.21 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.16 Total: -12.51 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.26 Total: -75.95 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -2.37 Total: -38.52 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.05 Total: -9.47 kcal Total: -74.96 2.63 -72.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344912151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.194 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds