Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.28767 * 2 1 4 4 C 1.54166 * 110.31699 * 122.11536 * 2 1 3 5 5 H 1.09005 * 109.64745 * 26.95282 * 4 2 1 6 6 N 1.46503 * 109.64341 * 266.53067 * 4 2 1 7 7 C 1.34781 * 119.99722 * 154.99820 * 6 4 2 8 8 O 1.21581 * 120.00458 * 0.02562 * 7 6 4 9 9 C 1.47642 * 119.99626 * 179.97438 * 7 6 4 10 10 C 1.40013 * 119.89706 * 359.72379 * 9 7 6 11 11 C 1.36316 * 120.10365 * 179.71588 * 10 9 7 12 12 C 1.40885 * 119.89358 * 0.58277 * 11 10 9 13 13 C 1.41111 * 120.10493 * 179.67672 * 12 11 10 14 14 H 1.08001 * 120.00165 * 204.65332 * 13 12 11 15 15 C 1.40231 * 120.00140 * 24.64300 * 13 12 11 16 16 N 1.30649 * 119.99744 * 17.87727 * 15 13 12 17 17 Si 1.86793 * 120.00135 * 197.88016 * 15 13 12 18 18 H 1.48505 * 109.47392 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47508 * 119.99743 * 17 15 13 20 20 H 1.48497 * 109.47102 * 240.00060 * 17 15 13 21 21 C 1.40891 * 119.79443 * 359.69517 * 12 11 10 22 22 C 1.36316 * 119.88928 * 359.97438 * 21 12 11 23 23 C 1.53876 * 108.70677 * 146.80986 * 4 2 1 24 24 C 1.55052 * 106.62188 * 312.81701 * 23 4 2 25 25 S 1.82919 * 110.31848 * 237.77237 * 2 1 3 26 26 O 1.42100 * 109.35312 * 352.37753 * 25 2 1 27 27 O 1.42099 * 109.34961 * 125.57998 * 25 2 1 28 28 H 1.08997 * 109.46968 * 297.88771 * 1 2 3 29 29 H 1.08996 * 109.47335 * 177.88488 * 1 2 3 30 30 H 1.09000 * 109.46509 * 57.88418 * 1 2 3 31 31 H 0.96995 * 120.00334 * 335.00233 * 6 4 2 32 32 H 1.07999 * 119.94475 * 0.02562 * 10 9 7 33 33 H 1.08003 * 120.05308 * 180.25794 * 11 10 9 34 34 H 0.96993 * 119.99541 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.05459 * 179.97438 * 21 12 11 36 36 H 1.07996 * 119.94340 * 179.97438 * 22 21 12 37 37 H 1.08995 * 110.02693 * 72.10681 * 23 4 2 38 38 H 1.08997 * 110.02801 * 193.52823 * 23 4 2 39 39 H 1.08998 * 110.78541 * 160.70111 * 24 23 4 40 40 H 1.08994 * 110.78891 * 283.97375 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0653 -0.7686 1.2245 5 1 1.3344 -1.5143 1.5374 6 7 2.3146 0.1678 2.3233 7 6 2.2932 -0.2685 3.5984 8 8 2.0675 -1.4392 3.8367 9 6 2.5450 0.6751 4.7057 10 6 2.8115 2.0213 4.4284 11 6 3.0389 2.8973 5.4478 12 6 3.0175 2.4436 6.7814 13 6 3.2591 3.3452 7.8397 14 1 3.6339 2.9807 8.7847 15 6 3.0125 4.7145 7.6644 16 7 2.2498 5.1207 6.6845 17 14 3.7747 5.9577 8.8318 18 1 4.5902 5.2466 9.8489 19 1 4.6405 6.8899 8.0659 20 1 2.6987 6.7251 9.5091 21 6 2.7547 1.0868 7.0552 22 6 2.5219 0.2196 6.0295 23 6 3.3805 -1.4653 0.8337 24 6 3.1222 -2.1720 -0.5221 25 16 2.1652 -0.9148 -1.4511 26 8 1.0825 -1.5468 -2.1202 27 8 3.0602 -0.0834 -2.1770 28 1 -0.3633 0.4807 0.9083 29 1 -0.3634 -1.0269 -0.0379 30 1 -0.3632 0.5464 -0.8704 31 1 2.4950 1.1017 2.1332 32 1 2.8320 2.3673 3.4055 33 1 3.2402 3.9365 5.2332 34 1 2.0790 6.0677 6.5635 35 1 2.7378 0.7344 8.0758 36 1 2.3207 -0.8207 6.2383 37 1 4.1755 -0.7277 0.7246 38 1 3.6534 -2.1997 1.5914 39 1 4.0619 -2.3943 -1.0276 40 1 2.5370 -3.0803 -0.3795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356639943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = -96.425657 kcal Electronic energy + Delta-G solvation = -24622.109348 eV Core-core repulsion = 20914.327450 eV Total energy + Delta-G solvation = -3707.781898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61112 -37.64950 -37.30983 -36.58758 -36.24308 -33.96632 -32.84243 -32.32859 -30.19188 -29.53401 -26.84547 -25.50988 -23.82527 -22.43506 -21.37484 -20.88518 -19.93911 -18.93226 -17.62384 -17.26968 -17.13712 -16.55099 -15.75585 -15.73018 -15.42998 -14.80113 -14.26203 -14.20007 -14.03715 -13.86875 -13.32439 -13.21184 -13.01066 -12.89044 -12.68545 -12.35977 -12.27022 -12.19281 -12.15576 -11.97026 -11.72081 -11.44851 -11.38786 -11.31907 -11.02096 -10.93557 -10.73786 -10.43201 -10.12435 -9.65354 -9.43579 -9.12846 -8.88224 -7.81820 -7.64242 -7.12291 -4.69035 -0.24515 2.10571 2.23192 2.84215 2.90250 2.94932 2.95852 3.28162 3.45951 3.67223 3.72015 3.78570 3.98816 4.33040 4.38974 4.45622 4.54189 4.73099 4.94902 5.21084 5.31522 5.40202 5.48100 5.50396 5.61562 5.79871 5.88537 5.93649 5.98689 6.22296 6.66923 6.69978 6.74359 6.94215 7.03922 7.34347 7.54095 7.68043 7.77446 7.97935 8.04909 8.31252 8.54461 8.66133 8.88743 9.79522 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.002669 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.489979 B =10488.445035 C =11025.773393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.568 4.568 3 H 0.147 0.853 4 C 0.161 3.839 5 H 0.108 0.892 6 N -0.731 5.731 7 C 0.574 3.426 8 O -0.572 6.572 9 C -0.289 4.289 10 C -0.062 4.062 11 C -0.178 4.178 12 C 0.129 3.871 13 C -0.439 4.439 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.769 5.769 17 Si 0.914 3.086 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.271 1.271 21 C -0.239 4.239 22 C -0.020 4.020 23 C -0.135 4.135 24 C -0.583 4.583 25 S 2.391 3.609 26 O -0.933 6.933 27 O -0.936 6.936 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.401 0.599 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -5.292 -11.196 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.677 4.677 3 H 0.165 0.835 4 C 0.054 3.946 5 H 0.126 0.874 6 N -0.385 5.385 7 C 0.370 3.630 8 O -0.454 6.454 9 C -0.293 4.293 10 C -0.082 4.082 11 C -0.197 4.197 12 C 0.125 3.875 13 C -0.467 4.467 14 H 0.104 0.896 15 C -0.148 4.148 16 N -0.392 5.392 17 Si 0.737 3.263 18 H -0.180 1.180 19 H -0.193 1.193 20 H -0.196 1.196 21 C -0.259 4.259 22 C -0.039 4.039 23 C -0.175 4.175 24 C -0.714 4.714 25 S 2.573 3.427 26 O -0.930 6.930 27 O -0.933 6.933 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.237 0.763 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.030 -5.746 -12.110 13.404 hybrid contribution 0.515 1.101 1.193 1.703 sum 0.545 -4.645 -10.917 11.877 Atomic orbital electron populations 1.21491 0.88809 1.04169 1.04136 1.30665 1.07518 1.13261 1.16290 0.83467 1.21236 0.96194 0.91784 0.85406 0.87372 1.45917 1.75438 1.11998 1.05116 1.18644 0.74473 0.87865 0.82029 1.90638 1.51686 1.18659 1.84405 1.18822 1.24872 0.93422 0.92193 1.20463 0.98111 0.92433 0.97167 1.20979 1.07330 0.99375 0.92045 1.17801 0.85305 0.91472 0.92875 1.19916 1.35863 0.91161 0.99731 0.89590 1.26122 0.92755 1.00003 0.95912 1.69743 1.24256 1.18179 1.27022 0.86155 0.79888 0.79685 0.80565 1.18018 1.19320 1.19614 1.20721 1.13284 0.94714 0.97146 1.20353 0.94257 0.97793 0.91507 1.22704 0.98843 1.00819 0.95158 1.30579 1.15184 1.15536 1.10099 1.09160 0.76824 0.78641 0.78066 1.93600 1.53200 1.75013 1.71189 1.93623 1.64643 1.66346 1.68660 0.90032 0.90560 0.91175 0.76257 0.89344 0.86178 0.90181 0.88345 0.88094 0.89184 0.87610 0.84359 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.62 37.16 0.32 -0.84 16 2 C -0.57 -5.17 3.48 -26.12 -0.09 -5.26 16 3 H 0.15 1.14 7.77 -51.93 -0.40 0.74 16 4 C 0.16 1.82 2.43 -66.86 -0.16 1.66 16 5 H 0.11 1.31 7.29 -51.93 -0.38 0.93 16 6 N -0.73 -10.41 5.04 -53.77 -0.27 -10.68 16 7 C 0.57 10.94 7.74 -12.42 -0.10 10.84 16 8 O -0.57 -12.20 15.98 5.29 0.08 -12.11 16 9 C -0.29 -6.14 5.89 -104.73 -0.62 -6.75 16 10 C -0.06 -1.30 9.47 -39.61 -0.38 -1.67 16 11 C -0.18 -4.16 8.64 -39.27 -0.34 -4.50 16 12 C 0.13 3.15 5.58 -106.80 -0.60 2.55 16 13 C -0.44 -10.55 9.04 -37.74 -0.34 -10.89 16 14 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 15 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 16 N -0.77 -17.78 10.95 55.56 0.61 -17.17 16 17 Si 0.91 16.69 29.60 -169.99 -5.03 11.66 16 18 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 20 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.24 -5.55 9.73 -39.27 -0.38 -5.93 16 22 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 23 C -0.14 -1.33 6.07 -25.19 -0.15 -1.48 16 24 C -0.58 -4.36 7.31 38.24 0.28 -4.08 16 25 S 2.39 22.43 5.95 -107.50 -0.64 21.79 16 26 O -0.93 -11.24 17.15 -57.71 -0.99 -12.23 16 27 O -0.94 -11.76 18.15 -57.71 -1.05 -12.81 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.40 5.06 6.36 -40.82 -0.26 4.80 16 32 H 0.09 1.52 6.37 -52.49 -0.33 1.18 16 33 H 0.12 2.86 6.16 -52.48 -0.32 2.53 16 34 H 0.29 5.94 8.29 -40.82 -0.34 5.60 16 35 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -31.51 345.41 -10.12 -41.62 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.02 Total: 10.32 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -3.02 Total: -25.61 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.34 Total: -27.85 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.95 Total: -37.16 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 22.43 SS G_CDS: -0.64 Total: 21.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.51 -10.12 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356639943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.801 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds