Wall clock time and date at job start Tue Mar 31 2020 13:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.28767 * 2 1 4 4 C 1.54166 * 110.31699 * 122.11536 * 2 1 3 5 5 H 1.09005 * 109.64745 * 26.95282 * 4 2 1 6 6 N 1.46503 * 109.64341 * 266.53067 * 4 2 1 7 7 C 1.34781 * 119.99722 * 154.99820 * 6 4 2 8 8 O 1.21581 * 120.00458 * 0.02562 * 7 6 4 9 9 C 1.47642 * 119.99626 * 179.97438 * 7 6 4 10 10 C 1.40013 * 119.89706 * 359.72379 * 9 7 6 11 11 C 1.36316 * 120.10365 * 179.71588 * 10 9 7 12 12 C 1.40885 * 119.89358 * 0.58277 * 11 10 9 13 13 C 1.41111 * 120.10493 * 179.67672 * 12 11 10 14 14 H 1.08001 * 120.00165 * 204.65332 * 13 12 11 15 15 C 1.40231 * 120.00140 * 24.64300 * 13 12 11 16 16 N 1.30649 * 119.99744 * 17.87727 * 15 13 12 17 17 Si 1.86793 * 120.00135 * 197.88016 * 15 13 12 18 18 H 1.48505 * 109.47392 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47508 * 119.99743 * 17 15 13 20 20 H 1.48497 * 109.47102 * 240.00060 * 17 15 13 21 21 C 1.40891 * 119.79443 * 359.69517 * 12 11 10 22 22 C 1.36316 * 119.88928 * 359.97438 * 21 12 11 23 23 C 1.53876 * 108.70677 * 146.80986 * 4 2 1 24 24 C 1.55052 * 106.62188 * 312.81701 * 23 4 2 25 25 S 1.82919 * 110.31848 * 237.77237 * 2 1 3 26 26 O 1.42100 * 109.35312 * 352.37753 * 25 2 1 27 27 O 1.42099 * 109.34961 * 125.57998 * 25 2 1 28 28 H 1.08997 * 109.46968 * 297.88771 * 1 2 3 29 29 H 1.08996 * 109.47335 * 177.88488 * 1 2 3 30 30 H 1.09000 * 109.46509 * 57.88418 * 1 2 3 31 31 H 0.96995 * 120.00334 * 335.00233 * 6 4 2 32 32 H 1.07999 * 119.94475 * 0.02562 * 10 9 7 33 33 H 1.08003 * 120.05308 * 180.25794 * 11 10 9 34 34 H 0.96993 * 119.99541 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.05459 * 179.97438 * 21 12 11 36 36 H 1.07996 * 119.94340 * 179.97438 * 22 21 12 37 37 H 1.08995 * 110.02693 * 72.10681 * 23 4 2 38 38 H 1.08997 * 110.02801 * 193.52823 * 23 4 2 39 39 H 1.08998 * 110.78541 * 160.70111 * 24 23 4 40 40 H 1.08994 * 110.78891 * 283.97375 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0653 -0.7686 1.2245 5 1 1.3344 -1.5143 1.5374 6 7 2.3146 0.1678 2.3233 7 6 2.2932 -0.2685 3.5984 8 8 2.0675 -1.4392 3.8367 9 6 2.5450 0.6751 4.7057 10 6 2.8115 2.0213 4.4284 11 6 3.0389 2.8973 5.4478 12 6 3.0175 2.4436 6.7814 13 6 3.2591 3.3452 7.8397 14 1 3.6339 2.9807 8.7847 15 6 3.0125 4.7145 7.6644 16 7 2.2498 5.1207 6.6845 17 14 3.7747 5.9577 8.8318 18 1 4.5902 5.2466 9.8489 19 1 4.6405 6.8899 8.0659 20 1 2.6987 6.7251 9.5091 21 6 2.7547 1.0868 7.0552 22 6 2.5219 0.2196 6.0295 23 6 3.3805 -1.4653 0.8337 24 6 3.1222 -2.1720 -0.5221 25 16 2.1652 -0.9148 -1.4511 26 8 1.0825 -1.5468 -2.1202 27 8 3.0602 -0.0834 -2.1770 28 1 -0.3633 0.4807 0.9083 29 1 -0.3634 -1.0269 -0.0379 30 1 -0.3632 0.5464 -0.8704 31 1 2.4950 1.1017 2.1332 32 1 2.8320 2.3673 3.4055 33 1 3.2402 3.9365 5.2332 34 1 2.0790 6.0677 6.5635 35 1 2.7378 0.7344 8.0758 36 1 2.3207 -0.8207 6.2383 37 1 4.1755 -0.7277 0.7246 38 1 3.6534 -2.1997 1.5914 39 1 4.0619 -2.3943 -1.0276 40 1 2.5370 -3.0803 -0.3795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356639943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:59 Heat of formation + Delta-G solvation = -117.869779 kcal Electronic energy + Delta-G solvation = -24623.039235 eV Core-core repulsion = 20914.327450 eV Total energy + Delta-G solvation = -3708.711785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00044 -39.16388 -38.17211 -37.86648 -37.11398 -35.66969 -34.08053 -33.08704 -31.84196 -31.28219 -28.17052 -26.78158 -24.58824 -23.88944 -22.85762 -22.20797 -21.36650 -19.76809 -19.36455 -18.58274 -18.08151 -17.45906 -17.17816 -16.78476 -16.55718 -15.87195 -15.74906 -15.57102 -15.23252 -15.07788 -14.75017 -14.50686 -14.05253 -13.95975 -13.76104 -13.69733 -13.46496 -13.23468 -13.21741 -13.13241 -12.92192 -12.85601 -12.63478 -12.46148 -12.37490 -12.14293 -11.77743 -11.75403 -11.36693 -11.24417 -11.11974 -10.67668 -10.13691 -9.56676 -9.40588 -8.80077 -6.48383 -1.00428 0.44132 1.16087 1.38294 1.41797 1.47764 1.54949 2.11129 2.17338 2.33044 2.52006 2.77892 2.99393 3.17641 3.56793 3.59835 3.71532 3.78453 3.98726 4.21465 4.29076 4.32492 4.45550 4.49075 4.68194 4.69754 4.80820 4.90949 4.93625 5.00956 5.03359 5.16612 5.17850 5.30532 5.49899 5.59514 5.82831 5.94421 6.00008 6.23710 6.54636 6.66335 6.77681 6.89386 7.41655 8.15045 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.002669 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.489979 B =10488.445035 C =11025.773393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.559 4.559 3 H 0.165 0.835 4 C 0.154 3.846 5 H 0.102 0.898 6 N -0.714 5.714 7 C 0.578 3.422 8 O -0.597 6.597 9 C -0.293 4.293 10 C -0.053 4.053 11 C -0.199 4.199 12 C 0.102 3.898 13 C -0.474 4.474 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.797 5.797 17 Si 0.986 3.014 18 H -0.258 1.258 19 H -0.260 1.260 20 H -0.265 1.265 21 C -0.255 4.255 22 C -0.031 4.031 23 C -0.138 4.138 24 C -0.563 4.563 25 S 2.408 3.592 26 O -0.960 6.960 27 O -0.967 6.967 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.411 0.589 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.297 0.703 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -5.072 -12.479 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.669 4.669 3 H 0.182 0.818 4 C 0.048 3.952 5 H 0.120 0.880 6 N -0.367 5.367 7 C 0.371 3.629 8 O -0.480 6.480 9 C -0.298 4.298 10 C -0.072 4.072 11 C -0.219 4.219 12 C 0.098 3.902 13 C -0.501 4.501 14 H 0.102 0.898 15 C -0.180 4.180 16 N -0.420 5.420 17 Si 0.806 3.194 18 H -0.181 1.181 19 H -0.184 1.184 20 H -0.189 1.189 21 C -0.274 4.274 22 C -0.050 4.050 23 C -0.178 4.178 24 C -0.695 4.695 25 S 2.593 3.407 26 O -0.958 6.958 27 O -0.964 6.964 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.249 0.751 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.181 0.819 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.551 -5.513 -13.454 14.550 hybrid contribution 0.302 0.912 1.508 1.788 sum 0.852 -4.600 -11.946 12.829 Atomic orbital electron populations 1.21578 0.88782 1.04578 1.04416 1.30610 1.07556 1.14031 1.14711 0.81784 1.21468 0.97264 0.91438 0.85072 0.88023 1.45731 1.73646 1.13026 1.04309 1.18302 0.74519 0.86957 0.83073 1.90628 1.52867 1.19442 1.85091 1.19166 1.23640 0.94224 0.92760 1.20751 0.96196 0.91771 0.98510 1.21015 1.08922 0.99523 0.92390 1.18137 0.86075 0.92110 0.93828 1.20139 1.37590 0.92511 0.99872 0.89838 1.26892 0.92574 1.01084 0.97485 1.69758 1.24759 1.19207 1.28318 0.85090 0.78989 0.77028 0.78323 1.18137 1.18442 1.18926 1.20855 1.14032 0.94805 0.97729 1.20513 0.94438 0.97889 0.92206 1.22677 0.98079 1.00997 0.95997 1.30499 1.16126 1.14959 1.07952 1.08552 0.76044 0.78372 0.77720 1.93564 1.54422 1.75424 1.72343 1.93585 1.65217 1.67612 1.69958 0.90639 0.90316 0.89976 0.75119 0.85597 0.86963 0.89206 0.88026 0.87787 0.88044 0.88582 0.81935 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.62 71.98 0.62 -1.59 16 2 C -0.56 -8.85 3.48 30.99 0.11 -8.74 16 3 H 0.16 2.05 7.77 -2.39 -0.02 2.04 16 4 C 0.15 3.13 2.43 45.68 0.11 3.24 16 5 H 0.10 2.27 7.29 -2.38 -0.02 2.25 16 6 N -0.71 -18.76 5.04 -442.30 -2.23 -20.99 16 7 C 0.58 21.26 7.74 86.73 0.67 21.93 16 8 O -0.60 -24.92 15.98 -3.97 -0.06 -24.98 16 9 C -0.29 -12.32 5.89 -19.93 -0.12 -12.44 16 10 C -0.05 -2.17 9.47 22.25 0.21 -1.96 16 11 C -0.20 -9.40 8.64 22.47 0.19 -9.21 16 12 C 0.10 5.11 5.58 -21.28 -0.12 4.99 16 13 C -0.47 -23.38 9.04 23.46 0.21 -23.17 16 14 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.04 1.76 5.14 85.35 0.44 2.19 16 16 N -0.80 -37.06 10.95 21.87 0.24 -36.82 16 17 Si 0.99 34.01 29.60 68.60 2.03 36.04 16 18 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 19 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 20 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 21 C -0.25 -12.18 9.73 22.47 0.22 -11.96 16 22 C -0.03 -1.42 9.52 22.25 0.21 -1.21 16 23 C -0.14 -2.32 6.07 31.59 0.19 -2.13 16 24 C -0.56 -6.59 7.31 72.68 0.53 -6.06 16 25 S 2.41 39.77 5.95 -56.49 -0.34 39.43 16 26 O -0.96 -21.46 17.15 -127.49 -2.19 -23.64 16 27 O -0.97 -22.35 18.15 -127.49 -2.31 -24.66 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.24 7.93 -2.39 -0.02 1.22 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.41 9.18 6.36 -92.71 -0.59 8.59 16 32 H 0.13 4.02 6.37 -2.91 -0.02 4.00 16 33 H 0.11 5.41 6.16 -2.91 -0.02 5.39 16 34 H 0.30 12.22 8.29 -92.71 -0.77 11.45 16 35 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.10 4.56 7.63 -2.91 -0.02 4.53 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -68.52 345.41 -0.89 -69.41 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.49 Total: 32.32 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 3.48 Total: -46.10 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -1.99 Total: -57.81 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -4.56 Total: -73.28 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Atomic # 16 Polarization: 39.77 SS G_CDS: -0.34 Total: 39.43 kcal Total: -68.52 -0.89 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356639943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.464 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds