Wall clock time and date at job start Tue Mar 31 2020 14:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00277 * 2 1 4 4 N 1.34774 * 119.99744 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00035 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47241 * 34.99776 * 5 4 2 7 7 C 1.53001 * 109.47293 * 155.00343 * 5 4 2 8 8 S 1.81404 * 109.46646 * 299.99517 * 7 5 4 9 9 C 1.81401 * 102.99931 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47178 * 180.02562 * 9 8 7 11 11 C 1.38636 * 119.74856 * 269.73151 * 10 9 8 12 12 C 1.37618 * 120.24678 * 179.72148 * 11 10 9 13 13 C 1.40709 * 119.74382 * 0.56905 * 12 11 10 14 14 C 1.41398 * 120.24324 * 179.68331 * 13 12 11 15 15 H 1.07998 * 119.99708 * 204.40326 * 14 13 12 16 16 C 1.39947 * 119.99900 * 24.40044 * 14 13 12 17 17 N 1.30821 * 119.99943 * 17.85606 * 16 14 13 18 18 Si 1.86796 * 119.99810 * 197.85699 * 16 14 13 19 19 H 1.48502 * 109.47442 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47002 * 120.00110 * 18 16 14 21 21 H 1.48497 * 109.47489 * 240.00158 * 18 16 14 22 22 C 1.40714 * 119.51366 * 359.70343 * 13 12 11 23 23 C 1.37615 * 119.74407 * 359.97438 * 22 13 12 24 24 C 1.50703 * 109.46776 * 274.99697 * 5 4 2 25 25 O 1.20827 * 120.00287 * 0.02562 * 24 5 4 26 26 O 1.34234 * 119.99649 * 180.02562 * 24 5 4 27 27 H 1.08996 * 109.47181 * 239.99954 * 1 2 3 28 28 H 1.09005 * 109.46629 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47133 * 119.99262 * 1 2 3 30 30 H 0.97003 * 120.00520 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.47440 * 59.99554 * 7 5 4 32 32 H 1.09000 * 109.47023 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47342 * 300.00325 * 9 8 7 34 34 H 1.09002 * 109.46866 * 60.00221 * 9 8 7 35 35 H 1.08003 * 119.87171 * 359.97438 * 11 10 9 36 36 H 1.08006 * 120.12405 * 180.27524 * 12 11 10 37 37 H 0.97002 * 119.99846 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.12936 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.87661 * 179.97438 * 23 22 13 40 40 H 0.96703 * 116.99821 * 180.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0090 -0.3259 0.5901 7 6 4.1556 -2.4751 0.6089 8 16 3.5503 -2.6252 2.3124 9 6 4.2466 -4.2101 2.8547 10 6 3.8264 -4.4833 4.2759 11 6 4.6202 -4.0444 5.3244 12 6 4.2434 -4.2834 6.6262 13 6 3.0537 -4.9865 6.8908 14 6 2.6599 -5.2436 8.2243 15 1 2.0097 -6.0775 8.4440 16 6 3.1129 -4.4177 9.2593 17 7 3.5957 -3.2328 8.9869 18 14 3.0282 -5.0074 11.0297 19 1 2.4464 -6.3731 11.0694 20 1 4.3957 -5.0355 11.6081 21 1 2.1758 -4.0827 11.8193 22 6 2.2588 -5.4321 5.8187 23 6 2.6517 -5.1761 4.5249 24 6 4.1487 -1.0426 -1.4151 25 8 3.3638 -0.9615 -2.3302 26 8 5.4685 -1.0216 -1.6590 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5137 -0.8900 30 1 1.6958 -2.0073 -0.0013 31 1 3.7924 -3.3165 0.0188 32 1 5.2456 -2.4749 0.6097 33 1 3.8808 -5.0078 2.2082 34 1 5.3343 -4.1671 2.7988 35 1 5.5356 -3.5095 5.1187 36 1 4.8611 -3.9367 7.4416 37 1 3.9093 -2.6602 9.7043 38 1 1.3438 -5.9731 6.0103 39 1 2.0434 -5.5175 3.7004 40 1 5.7430 -0.9399 -2.5827 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399014254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:30 Heat of formation + Delta-G solvation = -141.173615 kcal Electronic energy + Delta-G solvation = -23604.011531 eV Core-core repulsion = 19894.289215 eV Total energy + Delta-G solvation = -3709.722316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77456 -40.32239 -39.44675 -37.28146 -36.47988 -35.82759 -32.98965 -32.73651 -31.16796 -29.98536 -29.25148 -26.48227 -25.52916 -22.89403 -22.80215 -21.81037 -21.67091 -19.28674 -19.22178 -18.49614 -18.00213 -17.40047 -17.13879 -17.03742 -16.40506 -15.99482 -15.92000 -15.65907 -15.60832 -14.95793 -14.88165 -14.49554 -14.35131 -13.96606 -13.81797 -13.66611 -13.31344 -13.25810 -13.13301 -13.00723 -12.84221 -12.72285 -12.63305 -12.35207 -12.14984 -11.88837 -11.46597 -11.27307 -11.15303 -11.02782 -10.83017 -10.44151 -9.35140 -9.16214 -8.65028 -8.56504 -6.32897 0.32697 0.97410 1.12670 1.18643 1.38877 1.41363 1.50659 1.54061 1.80683 1.83795 2.20553 2.40586 2.77043 3.33276 3.77121 3.77588 3.89544 4.15566 4.20664 4.21141 4.33327 4.50658 4.53206 4.55528 4.63840 4.66148 4.76345 5.02139 5.07164 5.15555 5.18740 5.37339 5.45782 5.46145 5.71072 5.95871 6.10940 6.21032 6.37928 6.38676 6.70538 6.83940 6.93663 7.03330 7.10357 8.31272 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002466 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.854297 B =11350.876628 C =11878.626243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.595 6.595 4 N -0.699 5.699 5 C 0.175 3.825 6 H 0.118 0.882 7 C -0.089 4.089 8 S -0.279 6.279 9 C -0.001 4.001 10 C -0.200 4.200 11 C -0.086 4.086 12 C -0.193 4.193 13 C 0.083 3.917 14 C -0.496 4.496 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.822 5.822 18 Si 0.981 3.019 19 H -0.257 1.257 20 H -0.264 1.264 21 H -0.267 1.267 22 C -0.244 4.244 23 C -0.068 4.068 24 C 0.482 3.518 25 O -0.533 6.533 26 O -0.503 6.503 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.423 0.577 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.288 0.712 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 0.482 -17.328 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.302 3.698 3 O -0.476 6.476 4 N -0.353 5.353 5 C 0.066 3.934 6 H 0.135 0.865 7 C -0.237 4.237 8 S -0.049 6.049 9 C -0.148 4.148 10 C -0.203 4.203 11 C -0.105 4.105 12 C -0.213 4.213 13 C 0.080 3.920 14 C -0.525 4.525 15 H 0.094 0.906 16 C -0.181 4.181 17 N -0.447 5.447 18 Si 0.802 3.198 19 H -0.180 1.180 20 H -0.189 1.189 21 H -0.192 1.192 22 C -0.264 4.264 23 C -0.087 4.087 24 C 0.321 3.679 25 O -0.423 6.423 26 O -0.317 6.317 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.262 0.738 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 0.033 2.147 -16.580 16.718 hybrid contribution 0.762 -1.008 -0.246 1.287 sum 0.795 1.139 -16.826 16.883 Atomic orbital electron populations 1.21925 0.87722 1.06276 1.06517 1.21660 0.92600 0.82510 0.72983 1.90694 1.72092 1.33092 1.51683 1.45734 1.04563 1.10314 1.74660 1.19949 0.82857 1.01093 0.89543 0.86454 1.23530 1.06001 0.97915 0.96268 1.87840 1.71064 1.32446 1.13500 1.21990 1.02328 0.94627 0.95832 1.18770 0.99344 1.09583 0.92587 1.20780 0.98697 0.98406 0.92661 1.21255 0.98136 1.06305 0.95600 1.18013 0.90656 0.89739 0.93593 1.19916 1.27884 1.12487 0.92241 0.90550 1.26775 0.91960 0.93433 1.05921 1.69889 1.30670 1.07309 1.36862 0.85172 0.79143 0.79632 0.75864 1.18045 1.18899 1.19150 1.21169 1.01057 1.10999 0.93198 1.20695 0.95243 0.97128 0.95663 1.23775 0.80795 0.71155 0.92159 1.90708 1.57895 1.46545 1.47111 1.84488 1.24149 1.84251 1.38785 0.87119 0.89022 0.86869 0.73809 0.87044 0.85979 0.88394 0.89350 0.87692 0.88358 0.90115 0.88420 0.86032 0.70635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.32 71.24 0.74 -1.76 16 2 C 0.51 12.42 7.77 87.66 0.68 13.10 16 3 O -0.59 -19.95 16.75 -3.04 -0.05 -20.01 16 4 N -0.70 -14.15 4.14 -446.09 -1.85 -16.00 16 5 C 0.17 3.61 2.53 44.25 0.11 3.72 16 6 H 0.12 2.91 7.58 -2.39 -0.02 2.89 16 7 C -0.09 -1.54 5.43 71.98 0.39 -1.15 16 8 S -0.28 -7.46 21.30 -56.49 -1.20 -8.67 16 9 C 0.00 -0.03 6.06 71.24 0.43 0.40 16 10 C -0.20 -7.69 5.16 -19.67 -0.10 -7.79 16 11 C -0.09 -3.77 9.67 22.22 0.21 -3.56 16 12 C -0.19 -9.97 8.70 22.73 0.20 -9.78 16 13 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 14 C -0.50 -26.41 9.05 23.46 0.21 -26.20 16 15 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 16 C 0.03 1.72 5.14 85.26 0.44 2.16 16 17 N -0.82 -42.90 10.95 21.83 0.24 -42.66 16 18 Si 0.98 37.75 29.59 68.60 2.03 39.78 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 22 C -0.24 -11.54 9.80 22.73 0.22 -11.31 16 23 C -0.07 -2.71 9.67 22.22 0.21 -2.50 16 24 C 0.48 9.84 7.66 71.24 0.55 10.39 16 25 O -0.53 -13.86 17.08 21.96 0.38 -13.49 16 26 O -0.50 -7.12 13.33 -51.45 -0.69 -7.80 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.43 8.12 -2.38 -0.02 1.41 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.42 6.44 8.60 -92.71 -0.80 5.64 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 33 H 0.10 2.24 8.08 -2.39 -0.02 2.22 16 34 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 35 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 36 H 0.10 5.38 6.16 -2.91 -0.02 5.36 16 37 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 38 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.43 2.33 9.10 -74.06 -0.67 1.66 16 Total: -1.00 -72.31 365.64 2.65 -69.67 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.39 Total: 29.17 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.18 Total: -30.00 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -1.61 Total: -58.65 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.36 Total: -41.30 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.20 Total: -8.67 kcal Total: -72.31 2.65 -69.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399014254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.509 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds