Wall clock time and date at job start Tue Mar 31 2020 14:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 110.54162 * 2 1 4 4 O 1.42098 * 110.54387 * 223.25016 * 2 1 3 5 5 C 1.76200 * 104.44777 * 111.62732 * 2 1 3 6 6 C 1.38359 * 119.85551 * 90.00277 * 5 2 1 7 7 C 1.37952 * 120.14319 * 180.02562 * 6 5 2 8 8 C 1.39583 * 119.85407 * 0.27535 * 7 6 5 9 9 C 1.47848 * 120.14092 * 179.72453 * 8 7 6 10 10 O 1.21554 * 120.00478 * 354.80651 * 9 8 7 11 11 N 1.34777 * 119.99646 * 174.81311 * 9 8 7 12 12 C 1.46501 * 120.00119 * 185.69335 * 11 9 8 13 13 C 1.52993 * 109.47355 * 183.71311 * 12 11 9 14 14 C 1.50703 * 115.54930 * 306.46081 * 13 12 11 15 15 H 1.07998 * 120.00398 * 145.12211 * 14 13 12 16 16 C 1.37881 * 119.99822 * 325.12057 * 14 13 12 17 17 N 1.31511 * 120.00179 * 349.35480 * 16 14 13 18 18 Si 1.86797 * 119.99861 * 169.35628 * 16 14 13 19 19 H 1.48499 * 109.47345 * 90.00154 * 18 16 14 20 20 H 1.48502 * 109.46941 * 210.00219 * 18 16 14 21 21 H 1.48500 * 109.47320 * 329.99740 * 18 16 14 22 22 C 1.53001 * 117.50242 * 160.79340 * 13 12 11 23 23 C 1.52999 * 117.50049 * 92.13153 * 13 12 11 24 24 C 1.39574 * 119.71028 * 359.47090 * 8 7 6 25 25 C 1.37957 * 119.85183 * 0.50924 * 24 8 7 26 26 H 1.08997 * 109.47377 * 308.37417 * 1 2 3 27 27 H 1.09000 * 109.47141 * 68.37852 * 1 2 3 28 28 H 1.08999 * 109.47161 * 188.37459 * 1 2 3 29 29 H 1.07998 * 119.92765 * 0.04196 * 6 5 2 30 30 H 1.08000 * 120.07132 * 180.02562 * 7 6 5 31 31 H 0.96996 * 120.00194 * 5.68282 * 11 9 8 32 32 H 1.09008 * 109.46489 * 303.71102 * 12 11 9 33 33 H 1.08995 * 109.47330 * 63.70810 * 12 11 9 34 34 H 0.96997 * 120.00161 * 185.03868 * 17 16 14 35 35 H 1.09005 * 117.49645 * 359.97438 * 22 13 12 36 36 H 1.08991 * 117.50267 * 145.01959 * 22 13 12 37 37 H 1.09005 * 117.49658 * 214.98235 * 23 13 12 38 38 H 1.08998 * 117.49881 * 359.97409 * 23 13 12 39 39 H 1.07999 * 120.07095 * 180.23401 * 24 8 7 40 40 H 1.07998 * 119.92474 * 179.74881 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2536 -0.6289 1.5862 6 6 2.4255 -1.9902 1.7639 7 6 2.7692 -2.4890 3.0033 8 6 2.9378 -1.6177 4.0806 9 6 3.3002 -2.1460 5.4131 10 8 3.3595 -3.3463 5.5955 11 7 3.5646 -1.2967 6.4256 12 6 4.0442 -1.8142 7.7096 13 6 4.1770 -0.6614 8.7066 14 6 5.0107 0.5056 8.2436 15 1 4.7440 1.5101 8.5373 16 6 6.1139 0.2908 7.4449 17 7 6.5628 -0.9312 7.2583 18 14 6.9711 1.7355 6.6281 19 1 8.0326 2.2544 7.5276 20 1 7.5801 1.2909 5.3488 21 1 5.9821 2.8099 6.3584 22 6 4.2222 -1.0156 10.1943 23 6 2.9732 -0.3588 9.6012 24 6 2.7681 -0.2450 3.8933 25 6 2.4249 0.2409 2.6485 26 1 -0.3634 0.6379 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.2906 -2.6637 0.9305 30 1 2.9035 -3.5518 3.1407 31 1 3.4376 -0.3428 6.3042 32 1 3.3344 -2.5469 8.0938 33 1 5.0158 -2.2879 7.5703 34 1 7.3805 -1.0763 6.7572 35 1 4.1569 -2.0700 10.4628 36 1 4.8545 -0.4045 10.8382 37 1 2.7845 0.6844 9.8551 38 1 2.0865 -0.9807 9.4791 39 1 2.9009 0.4348 4.7219 40 1 2.2893 1.3024 2.5032 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404052118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:38 Heat of formation + Delta-G solvation = -49.420919 kcal Electronic energy + Delta-G solvation = -24798.988884 eV Core-core repulsion = 21093.245264 eV Total energy + Delta-G solvation = -3705.743620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90725 -38.15367 -37.32451 -36.71209 -36.15465 -33.42967 -32.29955 -31.50224 -31.09341 -29.82929 -26.47465 -25.54597 -23.77771 -22.73519 -21.31766 -20.06444 -19.41595 -19.20670 -18.20865 -17.26601 -16.44524 -16.39955 -16.04397 -15.38734 -14.93579 -14.86145 -14.50004 -14.39902 -14.08492 -13.74056 -13.68357 -13.53585 -13.33089 -13.04068 -12.77075 -12.51856 -12.30027 -12.18780 -11.86473 -11.61753 -11.38192 -11.30530 -11.11783 -10.92304 -10.87861 -10.58606 -10.35702 -9.80745 -9.40503 -9.33733 -9.22035 -9.16216 -8.93022 -8.37391 -8.01866 -6.17280 -4.27980 -0.21744 0.43990 1.21256 2.59906 2.91135 3.15673 3.26444 3.27089 3.62268 3.76769 3.85898 3.99062 4.21816 4.42529 4.50802 4.72347 4.75767 4.82378 5.11620 5.21290 5.27865 5.33493 5.41624 5.52090 5.78915 5.90349 5.94828 6.03097 6.20896 6.27552 6.44433 6.52112 6.60655 6.66960 6.81037 6.97065 7.18894 7.36324 7.45405 7.80938 8.21296 8.29687 8.71334 8.85035 9.33668 10.79544 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003576 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.226876 B = 7829.070395 C = 8631.796062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.937 6.937 4 O -0.938 6.938 5 C -0.652 4.652 6 C -0.034 4.034 7 C -0.088 4.088 8 C -0.060 4.060 9 C 0.537 3.463 10 O -0.552 6.552 11 N -0.675 5.675 12 C 0.160 3.840 13 C 0.036 3.964 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.077 3.923 17 N -0.867 5.867 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.270 1.270 22 C -0.194 4.194 23 C -0.212 4.212 24 C -0.109 4.109 25 C -0.031 4.031 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.401 0.599 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 1.509 -12.113 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.682 3.318 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.739 4.739 6 C -0.053 4.053 7 C -0.108 4.108 8 C -0.064 4.064 9 C 0.322 3.678 10 O -0.432 6.432 11 N -0.322 5.322 12 C 0.037 3.963 13 C 0.036 3.964 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.129 4.129 17 N -0.502 5.502 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.233 4.233 23 C -0.249 4.249 24 C -0.129 4.129 25 C -0.050 4.050 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.237 0.763 32 H 0.049 0.951 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.006 0.814 -12.732 17.519 hybrid contribution 0.129 0.961 0.504 1.093 sum -11.877 1.775 -12.228 17.138 Atomic orbital electron populations 1.30223 1.25791 1.12167 1.11789 1.05093 0.77797 0.74619 0.74283 1.93595 1.77253 1.36505 1.86051 1.93586 1.77298 1.61669 1.60994 1.30592 1.18387 1.03067 1.21829 1.20882 0.93739 0.93092 0.97585 1.21413 0.97086 1.00968 0.91339 1.20664 0.96568 0.94050 0.95091 1.18126 0.79034 0.86662 0.84015 1.90722 1.54031 1.14954 1.83531 1.45794 1.63166 1.10347 1.12929 1.21113 0.99915 0.94600 0.80642 1.19175 0.94415 0.95385 0.87453 1.20492 1.11006 0.91583 1.30940 0.91875 1.24976 0.96697 0.95604 0.95577 1.69827 1.21017 1.19658 1.39728 0.86667 0.80054 0.82635 0.79316 1.20429 1.20883 1.19483 1.22921 1.00736 0.98450 1.01181 1.22975 0.92093 0.99696 1.10154 1.21607 0.98378 0.94776 0.98133 1.20878 0.93354 0.99546 0.91232 0.84867 0.85115 0.84919 0.83723 0.83743 0.76275 0.95057 0.87054 0.92457 0.91457 0.90110 0.90539 0.91335 0.84080 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.82 10.80 101.05 1.09 -1.73 16 2 S 2.50 22.24 5.79 -107.50 -0.62 21.62 16 3 O -0.94 -11.42 17.11 -57.54 -0.98 -12.41 16 4 O -0.94 -11.20 17.11 -57.54 -0.98 -12.18 16 5 C -0.65 -7.24 5.66 -39.49 -0.22 -7.46 16 6 C -0.03 -0.40 9.45 -39.64 -0.37 -0.77 16 7 C -0.09 -1.26 9.59 -39.18 -0.38 -1.64 16 8 C -0.06 -0.98 5.87 -104.96 -0.62 -1.60 16 9 C 0.54 10.74 7.76 -12.33 -0.10 10.65 16 10 O -0.55 -12.60 16.36 5.32 0.09 -12.51 16 11 N -0.68 -13.81 5.22 -61.25 -0.32 -14.13 16 12 C 0.16 3.63 4.75 -4.04 -0.02 3.61 16 13 C 0.04 0.83 2.00 -155.66 -0.31 0.51 16 14 C -0.50 -12.29 8.27 -34.44 -0.28 -12.57 16 15 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 16 C 0.08 1.90 5.12 -17.82 -0.09 1.81 16 17 N -0.87 -22.60 10.75 55.43 0.60 -22.00 16 18 Si 0.89 19.56 29.55 -169.99 -5.02 14.53 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C -0.19 -4.13 9.96 -26.69 -0.27 -4.39 16 23 C -0.21 -4.23 9.92 -26.69 -0.26 -4.50 16 24 C -0.11 -1.54 9.54 -39.19 -0.37 -1.92 16 25 C -0.03 -0.37 9.45 -39.64 -0.37 -0.75 16 26 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.15 1.32 7.56 -52.49 -0.40 0.93 16 30 H 0.14 2.02 7.66 -52.49 -0.40 1.61 16 31 H 0.40 7.68 5.98 -40.82 -0.24 7.43 16 32 H 0.03 0.70 8.06 -51.92 -0.42 0.28 16 33 H 0.11 2.89 6.04 -51.93 -0.31 2.58 16 34 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.14 1.86 6.42 -52.49 -0.34 1.52 16 40 H 0.15 1.40 7.56 -52.49 -0.40 1.01 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -33.20 353.80 -9.52 -42.72 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.01 Total: 9.80 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.58 Total: -20.76 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.28 Total: -36.13 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.88 Total: -37.10 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 22.24 SS G_CDS: -0.62 Total: 21.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.20 -9.52 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404052118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.705 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds