Wall clock time and date at job start Tue Mar 31 2020 14:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.53744 * 2 1 4 4 O 1.42097 * 110.54147 * 223.25300 * 2 1 3 5 5 C 1.76198 * 104.44872 * 111.62413 * 2 1 3 6 6 C 1.38382 * 119.92852 * 269.97441 * 5 2 1 7 7 C 1.38335 * 120.29481 * 180.02562 * 6 5 2 8 8 C 1.37983 * 120.14277 * 359.73904 * 7 6 5 9 9 C 1.39559 * 119.85133 * 0.54171 * 8 7 6 10 10 C 1.47844 * 120.14300 * 179.74141 * 9 8 7 11 11 O 1.21552 * 119.99895 * 184.86635 * 10 9 8 12 12 N 1.34773 * 120.00214 * 4.87107 * 10 9 8 13 13 C 1.46496 * 120.00173 * 185.07394 * 12 10 9 14 14 C 1.53003 * 109.47289 * 184.99316 * 13 12 10 15 15 C 1.50698 * 115.54792 * 54.23640 * 14 13 12 16 16 H 1.07999 * 119.99648 * 215.58778 * 15 14 13 17 17 C 1.37867 * 119.99990 * 35.32376 * 15 14 13 18 18 N 1.31522 * 120.00036 * 355.77909 * 17 15 14 19 19 Si 1.86805 * 120.00057 * 175.78021 * 17 15 14 20 20 H 1.48498 * 109.47042 * 59.99690 * 19 17 15 21 21 H 1.48505 * 109.47108 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46952 * 299.99608 * 19 17 15 23 23 C 1.52998 * 117.49894 * 199.90946 * 14 13 12 24 24 C 1.53004 * 117.49497 * 268.56892 * 14 13 12 25 25 C 1.37933 * 119.92793 * 90.00325 * 5 2 1 26 26 H 1.09007 * 109.47276 * 308.37247 * 1 2 3 27 27 H 1.08996 * 109.47444 * 68.37186 * 1 2 3 28 28 H 1.08995 * 109.47065 * 188.37632 * 1 2 3 29 29 H 1.08005 * 119.85424 * 359.97438 * 6 5 2 30 30 H 1.07999 * 119.93186 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.07264 * 180.25470 * 8 7 6 32 32 H 0.97006 * 120.00255 * 5.07146 * 12 10 9 33 33 H 1.09004 * 109.47177 * 64.99108 * 13 12 10 34 34 H 1.08996 * 109.47430 * 304.99159 * 13 12 10 35 35 H 0.96998 * 119.99755 * 185.00534 * 18 17 15 36 36 H 1.09005 * 117.50027 * 214.99915 * 23 14 13 37 37 H 1.09004 * 117.50176 * 0.02562 * 23 14 13 38 38 H 1.08991 * 117.50223 * 359.97438 * 24 14 13 39 39 H 1.09004 * 117.49272 * 144.97503 * 24 14 13 40 40 H 1.08001 * 120.07378 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 6 2.2537 -0.6288 1.5862 6 6 2.4265 0.2398 2.6495 7 6 2.7721 -0.2456 3.8979 8 6 2.9417 -1.6012 4.0917 9 6 2.7747 -2.4821 3.0222 10 6 2.9604 -3.9352 3.2213 11 8 2.9016 -4.6912 2.2712 12 7 3.1946 -4.4218 4.4561 13 6 3.4888 -5.8452 4.6389 14 6 3.5905 -6.1571 6.1334 15 6 2.4023 -5.7478 6.9651 16 1 2.5473 -5.3850 7.9719 17 6 1.1308 -5.8312 6.4387 18 7 0.9604 -6.1885 5.1845 19 14 -0.3500 -5.4366 7.5069 20 1 -0.2528 -4.0357 7.9899 21 1 -1.5926 -5.6000 6.7103 22 1 -0.3818 -6.3599 8.6695 23 6 4.3319 -7.4322 6.5400 24 6 4.9730 -6.0634 6.7820 25 6 2.4254 -1.9856 1.7651 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.2916 1.3014 2.5039 30 1 2.9051 0.4375 4.7238 31 1 3.2075 -1.9793 5.0678 32 1 3.1685 -3.8294 5.2238 33 1 4.4338 -6.0864 4.1522 34 1 2.6901 -6.4410 4.1970 35 1 0.0729 -6.1772 4.7933 36 1 3.9604 -7.9750 7.4092 37 1 4.7477 -8.0486 5.7429 38 1 5.8101 -5.7799 6.1442 39 1 5.0231 -5.7053 7.8103 40 1 2.2912 -2.6624 0.9342 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404158300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:41 Heat of formation + Delta-G solvation = -47.355849 kcal Electronic energy + Delta-G solvation = -24925.281827 eV Core-core repulsion = 21219.627755 eV Total energy + Delta-G solvation = -3705.654072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.82081 -38.05617 -37.24675 -36.65181 -36.08534 -33.30715 -32.28729 -31.38454 -31.15574 -29.72308 -26.30796 -25.49359 -23.64227 -22.88075 -21.32691 -20.29013 -19.38078 -18.88015 -18.14710 -16.63219 -16.39270 -16.20323 -16.09033 -15.75103 -15.17180 -14.92972 -14.37844 -14.28751 -14.09701 -13.74530 -13.58667 -13.43585 -13.18801 -12.73403 -12.70510 -12.31332 -12.22902 -12.13137 -11.81499 -11.63183 -11.50829 -11.27689 -11.13384 -10.83555 -10.77679 -10.59216 -10.32266 -9.81851 -9.49344 -9.25741 -9.05955 -9.04194 -8.92203 -8.36797 -7.93702 -6.06512 -4.27654 -0.12406 0.64969 1.03606 2.67349 3.01498 3.15239 3.23855 3.24916 3.69900 3.83081 4.01772 4.09165 4.22383 4.52076 4.60856 4.76520 4.80007 4.89326 5.01095 5.20819 5.33878 5.38972 5.40857 5.60589 5.76731 5.91428 5.96296 6.15142 6.20941 6.24109 6.46027 6.54498 6.63481 6.66592 6.83332 7.02097 7.19193 7.48046 7.55388 7.90055 8.22643 8.44233 8.73899 9.04230 9.36211 10.82215 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017090 B = 0.003508 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.943886 B = 7980.480656 C = 8472.427209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.504 3.496 3 O -0.941 6.941 4 O -0.933 6.933 5 C -0.671 4.671 6 C -0.014 4.014 7 C -0.146 4.146 8 C -0.034 4.034 9 C -0.134 4.134 10 C 0.544 3.456 11 O -0.550 6.550 12 N -0.672 5.672 13 C 0.163 3.837 14 C 0.035 3.965 15 C -0.500 4.500 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.865 5.865 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.198 4.198 24 C -0.213 4.213 25 C 0.028 3.972 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.396 0.604 33 H 0.020 0.980 34 H 0.120 0.880 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 13.850 -5.146 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.683 3.317 3 O -0.938 6.938 4 O -0.931 6.931 5 C -0.758 4.758 6 C -0.033 4.033 7 C -0.165 4.165 8 C -0.053 4.053 9 C -0.139 4.139 10 C 0.329 3.671 11 O -0.430 6.430 12 N -0.319 5.319 13 C 0.040 3.960 14 C 0.035 3.965 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.501 5.501 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.236 4.236 24 C -0.250 4.250 25 C 0.008 3.992 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.231 0.769 33 H 0.039 0.961 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.811 13.422 -6.562 14.962 hybrid contribution -1.272 0.116 1.932 2.316 sum -2.082 13.538 -4.631 14.459 Atomic orbital electron populations 1.30227 1.25724 1.12413 1.11673 1.05060 0.77832 0.74521 0.74284 1.93571 1.77467 1.36624 1.86178 1.93612 1.77198 1.61415 1.60850 1.30474 1.20437 1.02654 1.22221 1.21042 0.91480 0.99266 0.91531 1.21235 1.02117 0.95494 0.97620 1.21815 0.91470 0.93395 0.98626 1.20439 1.04037 0.94927 0.94453 1.17947 0.78428 0.86492 0.84236 1.90725 1.52308 1.58873 1.41125 1.45548 1.67802 1.11664 1.06860 1.21145 0.98947 0.80672 0.95216 1.19232 0.89441 0.95872 0.92001 1.20460 0.89206 1.44596 0.99457 0.92131 1.25007 0.98839 0.94147 0.95021 1.69846 1.22903 1.45607 1.11750 0.86634 0.81920 0.78813 0.80505 1.20279 1.21212 1.20078 1.22943 1.07144 0.91071 1.02461 1.22967 0.98587 1.02518 1.00934 1.21058 0.88080 0.92898 0.97182 0.84996 0.85080 0.84690 0.84013 0.84533 0.84350 0.76882 0.96143 0.86234 0.92525 0.90178 0.91398 0.91316 0.90597 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.88 10.80 101.05 1.09 -2.79 16 2 S 2.50 25.14 5.80 -107.50 -0.62 24.52 16 3 O -0.94 -11.44 17.12 -57.54 -0.98 -12.43 16 4 O -0.93 -12.99 17.12 -57.54 -0.98 -13.97 16 5 C -0.67 -8.09 5.65 -39.64 -0.22 -8.32 16 6 C -0.01 -0.15 9.47 -39.49 -0.37 -0.52 16 7 C -0.15 -1.60 10.03 -39.64 -0.40 -2.00 16 8 C -0.03 -0.46 9.52 -39.18 -0.37 -0.84 16 9 C -0.13 -2.23 5.87 -104.97 -0.62 -2.85 16 10 C 0.54 11.25 7.76 -12.33 -0.10 11.15 16 11 O -0.55 -13.22 16.34 5.32 0.09 -13.14 16 12 N -0.67 -13.91 4.96 -61.25 -0.30 -14.21 16 13 C 0.16 3.74 4.62 -4.04 -0.02 3.72 16 14 C 0.04 0.80 2.04 -155.66 -0.32 0.48 16 15 C -0.50 -12.20 8.43 -34.44 -0.29 -12.49 16 16 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 17 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 18 N -0.87 -22.43 10.11 55.43 0.56 -21.87 16 19 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.20 -4.18 9.96 -26.69 -0.27 -4.45 16 24 C -0.21 -4.24 9.92 -26.69 -0.26 -4.51 16 25 C 0.03 0.42 9.01 -39.19 -0.35 0.07 16 26 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.14 1.14 7.56 -52.48 -0.40 0.74 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.70 6.47 -52.49 -0.34 1.36 16 32 H 0.40 7.54 6.21 -40.82 -0.25 7.29 16 33 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.12 3.16 5.89 -51.93 -0.31 2.85 16 35 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.15 2.39 7.17 -52.49 -0.38 2.01 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -33.30 353.28 -9.56 -42.87 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.02 Total: 10.04 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.59 Total: -21.59 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.26 Total: -36.08 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.88 Total: -39.54 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 25.14 SS G_CDS: -0.62 Total: 24.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.30 -9.56 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404158300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.491 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds