Wall clock time and date at job start Tue Mar 31 2020 13:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47418 * 2 1 4 4 S 1.81405 * 109.47267 * 239.99480 * 2 1 3 5 5 C 1.81403 * 102.99825 * 65.00381 * 4 2 1 6 6 C 1.50693 * 109.46859 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00726 * 359.72238 * 6 5 4 8 8 C 1.37881 * 119.99783 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47280 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47025 * 119.99635 * 10 8 6 13 13 H 1.48497 * 109.47588 * 239.99754 * 10 8 6 14 14 C 1.50700 * 109.47016 * 119.99742 * 2 1 3 15 15 O 1.21294 * 120.00342 * 99.99591 * 14 2 1 16 16 N 1.34776 * 120.00089 * 280.00431 * 14 2 1 17 17 C 1.40102 * 120.00227 * 175.37900 * 16 14 2 18 18 C 1.38847 * 120.01650 * 214.81457 * 17 16 14 19 19 C 1.38125 * 120.03703 * 179.76940 * 18 17 16 20 20 C 1.38716 * 120.15726 * 0.54445 * 19 18 17 21 21 C 1.38986 * 119.93809 * 359.64836 * 20 19 18 22 22 C 1.38653 * 119.88438 * 0.11631 * 21 20 19 23 23 O 1.36110 * 120.78853 * 180.26357 * 21 20 19 24 24 C 1.43167 * 116.72992 * 342.80079 * 23 21 20 25 25 C 1.53467 * 108.24711 * 46.19141 * 24 23 21 26 26 O 1.36206 * 119.31582 * 179.55168 * 20 19 18 27 27 H 1.09005 * 109.46755 * 60.00368 * 1 2 3 28 28 H 1.08994 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47059 * 300.00910 * 1 2 3 30 30 H 1.09002 * 109.46913 * 59.99787 * 5 4 2 31 31 H 1.09001 * 109.46818 * 300.00150 * 5 4 2 32 32 H 0.97002 * 120.00533 * 179.97438 * 9 8 6 33 33 H 0.97003 * 119.99459 * 355.37243 * 16 14 2 34 34 H 1.08000 * 119.97744 * 0.04400 * 18 17 16 35 35 H 1.07992 * 119.92096 * 180.27773 * 19 18 17 36 36 H 1.07995 * 119.99529 * 179.97438 * 22 21 20 37 37 H 1.09006 * 109.70972 * 165.87300 * 24 23 21 38 38 H 1.08998 * 109.70971 * 286.50146 * 24 23 21 39 39 H 1.08999 * 109.71344 * 59.91530 * 25 24 23 40 40 H 1.08997 * 109.71601 * 180.55487 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8553 -1.4811 5 6 1.5666 0.2151 -2.8309 6 6 1.9975 -0.3698 -4.1511 7 1 2.5611 -1.2908 -4.1756 8 6 1.6777 0.2741 -5.3277 9 7 0.9962 1.3984 -5.2977 10 14 2.2125 -0.4506 -6.9642 11 1 2.9601 -1.7115 -6.7266 12 1 1.0147 -0.7350 -7.7947 13 1 3.0873 0.5180 -7.6724 14 6 2.0323 -0.7104 1.2305 15 8 2.4064 -1.8618 1.1559 16 7 2.0658 -0.0663 2.4140 17 6 2.4405 -0.7542 3.5755 18 6 1.8464 -0.4406 4.7907 19 6 2.2121 -1.1218 5.9353 20 6 3.1812 -2.1127 5.8769 21 6 3.7806 -2.4261 4.6627 22 6 3.4097 -1.7454 3.5132 23 8 4.7294 -3.3988 4.5847 24 6 5.3416 -3.8014 5.8147 25 6 4.2348 -4.0062 6.8578 26 8 3.5353 -2.7672 7.0177 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 2.0003 1.2083 -2.7142 31 1 0.4793 0.2880 -2.8037 32 1 0.7715 1.8516 -6.1254 33 1 1.8304 0.8735 2.4614 34 1 1.0948 0.3333 4.8401 35 1 1.7456 -0.8795 6.8786 36 1 3.8745 -1.9872 2.5688 37 1 5.8846 -4.7349 5.6668 38 1 6.0282 -3.0260 6.1546 39 1 3.5443 -4.7766 6.5148 40 1 4.6763 -4.3044 7.8087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:36 Heat of formation + Delta-G solvation = -104.384540 kcal Electronic energy + Delta-G solvation = -23955.014987 eV Core-core repulsion = 20246.887966 eV Total energy + Delta-G solvation = -3708.127022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33629 -41.31407 -38.68337 -38.23623 -35.65743 -35.29142 -34.19799 -31.96252 -31.11376 -30.60192 -29.07932 -26.14706 -25.34237 -25.22396 -24.15651 -22.11361 -21.58259 -19.81480 -19.17304 -18.72293 -18.50394 -17.70784 -17.51729 -16.93278 -16.54395 -16.30779 -16.28026 -15.89507 -15.40447 -15.35083 -15.07332 -14.98887 -14.70944 -14.46598 -14.35417 -14.22987 -13.83963 -13.54325 -13.25993 -13.18241 -12.93471 -12.71908 -12.56326 -12.42609 -12.02326 -11.83070 -11.58434 -11.56874 -11.06439 -10.87785 -10.74051 -10.56328 -9.59119 -8.81468 -8.51226 -8.33651 -6.45285 0.08632 0.24760 0.71107 1.39192 1.39891 1.41126 1.54492 1.86327 1.98077 2.04843 2.34829 2.37239 2.67150 3.01151 3.27713 3.54982 3.66088 3.84566 3.93171 3.99067 4.04983 4.10924 4.20024 4.34620 4.48923 4.57808 4.62190 4.67819 4.72062 4.84432 4.95558 4.96570 5.10723 5.15390 5.21030 5.26278 5.57775 5.67564 5.89111 5.90767 6.28113 6.38509 6.61155 6.99323 7.22122 8.78300 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.002344 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.903531 B =11942.383027 C =12760.060298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.127 0.873 4 S -0.279 6.279 5 C 0.091 3.909 6 C -0.538 4.538 7 H 0.055 0.945 8 C 0.019 3.981 9 N -0.920 5.920 10 Si 0.972 3.028 11 H -0.271 1.271 12 H -0.271 1.271 13 H -0.271 1.271 14 C 0.539 3.461 15 O -0.538 6.538 16 N -0.648 5.648 17 C 0.142 3.858 18 C -0.122 4.122 19 C -0.091 4.091 20 C 0.025 3.975 21 C 0.053 3.947 22 C -0.146 4.146 23 O -0.333 6.333 24 C 0.011 3.989 25 C 0.017 3.983 26 O -0.316 6.316 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.020 0.980 31 H 0.026 0.974 32 H 0.271 0.729 33 H 0.433 0.567 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -2.552 28.563 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.213 4.213 3 H 0.145 0.855 4 S -0.052 6.052 5 C -0.056 4.056 6 C -0.576 4.576 7 H 0.073 0.927 8 C -0.182 4.182 9 N -0.559 5.559 10 Si 0.796 3.204 11 H -0.195 1.195 12 H -0.196 1.196 13 H -0.196 1.196 14 C 0.325 3.675 15 O -0.413 6.413 16 N -0.297 5.297 17 C 0.048 3.952 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.020 4.020 21 C 0.007 3.993 22 C -0.167 4.167 23 O -0.249 6.249 24 C -0.063 4.063 25 C -0.058 4.058 26 O -0.231 6.231 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.274 0.726 34 H 0.194 0.806 35 H 0.186 0.814 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.150 -4.206 28.325 28.808 hybrid contribution -0.215 1.009 -1.227 1.603 sum 2.935 -3.197 27.097 27.443 Atomic orbital electron populations 1.21928 0.89310 1.03469 1.04451 1.23207 1.01950 1.03295 0.92828 0.85485 1.87264 1.76152 1.40750 1.01017 1.20828 0.97834 0.94563 0.92403 1.20973 1.36699 1.09370 0.90597 0.92660 1.25810 0.94537 0.95075 1.02807 1.70029 1.39114 1.17446 1.29293 0.85287 0.78422 0.78531 0.78164 1.19503 1.19615 1.19607 1.20094 0.76811 0.86267 0.84282 1.90740 1.46386 1.19035 1.85187 1.43174 1.67232 1.14807 1.04442 1.17484 0.95078 0.95546 0.87091 1.21024 1.01145 1.02983 0.89086 1.20596 0.95112 0.94858 1.00412 1.19093 0.99186 0.98774 0.84986 1.18778 0.93220 0.93492 0.93788 1.20454 0.99987 0.98729 0.97507 1.86315 1.51673 1.52212 1.34669 1.24007 0.95271 1.04071 0.82962 1.23914 0.94259 0.84177 1.03405 1.86289 1.73444 1.36069 1.27307 0.91680 0.92352 0.87611 0.96192 0.95562 0.92007 0.72645 0.80643 0.81383 0.86433 0.83411 0.89899 0.90667 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.08 71.98 0.65 -3.03 16 2 C -0.08 -2.62 3.18 29.85 0.09 -2.53 16 3 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 4 S -0.28 -12.88 20.32 -56.49 -1.15 -14.03 16 5 C 0.09 4.79 5.39 71.23 0.38 5.18 16 6 C -0.54 -31.17 9.13 25.60 0.23 -30.94 16 7 H 0.06 3.28 7.71 -2.91 -0.02 3.25 16 8 C 0.02 1.06 5.46 84.66 0.46 1.53 16 9 N -0.92 -53.26 13.29 21.45 0.28 -52.98 16 10 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 14 C 0.54 17.13 6.85 87.66 0.60 17.73 16 15 O -0.54 -22.18 13.48 -3.07 -0.04 -22.23 16 16 N -0.65 -14.39 5.34 -303.46 -1.62 -16.01 16 17 C 0.14 3.40 6.30 38.09 0.24 3.64 16 18 C -0.12 -2.00 9.96 22.39 0.22 -1.78 16 19 C -0.09 -1.55 9.95 22.36 0.22 -1.33 16 20 C 0.03 0.56 6.49 22.56 0.15 0.71 16 21 C 0.05 1.45 6.49 22.55 0.15 1.60 16 22 C -0.15 -4.44 8.61 22.49 0.19 -4.25 16 23 O -0.33 -8.87 10.42 -82.58 -0.86 -9.73 16 24 C 0.01 0.17 7.26 72.14 0.52 0.69 16 25 C 0.02 0.22 7.26 72.14 0.52 0.74 16 26 O -0.32 -5.99 10.42 -83.68 -0.87 -6.86 16 27 H 0.06 2.01 6.92 -2.38 -0.02 1.99 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.03 1.41 7.14 -2.39 -0.02 1.39 16 32 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.43 5.76 8.82 -92.71 -0.82 4.95 16 34 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.12 4.40 6.22 -2.91 -0.02 4.39 16 37 H 0.15 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -78.87 351.91 2.67 -76.20 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.26 Total: 11.44 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.65 Total: -12.05 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -1.34 Total: -68.99 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.77 Total: -38.82 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -12.88 SS G_CDS: -1.15 Total: -14.03 kcal Total: -78.87 2.67 -76.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.184 kcal (2) G-P(sol) polarization free energy of solvation -78.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds