Wall clock time and date at job start Tue Mar 31 2020 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99920 * 2 1 4 4 O 1.20824 * 120.00171 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99613 * 180.27286 * 3 2 1 6 6 H 1.08997 * 109.47240 * 324.72780 * 5 3 2 7 7 C 1.52999 * 109.47047 * 84.72936 * 5 3 2 8 8 S 1.81400 * 109.47275 * 204.72624 * 5 3 2 9 9 C 1.76195 * 103.00553 * 169.89511 * 8 5 3 10 10 C 1.39051 * 120.17795 * 354.45500 * 9 8 5 11 11 C 1.37911 * 120.05442 * 179.69241 * 10 9 8 12 12 C 1.38654 * 120.43399 * 0.60916 * 11 10 9 13 13 C 1.37730 * 120.36811 * 359.67070 * 12 11 10 14 14 C 1.39739 * 119.93375 * 0.02562 * 13 12 11 15 15 C 1.47389 * 120.21470 * 180.02562 * 14 13 12 16 16 O 1.21605 * 120.00319 * 179.97438 * 15 14 13 17 17 N 1.34777 * 119.99936 * 359.97438 * 15 14 13 18 18 C 1.46501 * 120.00057 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.46985 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00336 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99917 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00142 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00240 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46827 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47140 * 120.00046 * 23 21 19 26 26 H 1.48498 * 109.47269 * 240.00111 * 23 21 19 27 27 H 1.09005 * 109.46925 * 59.99735 * 1 2 3 28 28 H 1.08995 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47088 * 299.99985 * 1 2 3 30 30 H 1.08998 * 109.47217 * 54.53422 * 7 5 3 31 31 H 1.09001 * 109.47448 * 174.53649 * 7 5 3 32 32 H 1.09003 * 109.46642 * 294.53765 * 7 5 3 33 33 H 1.07998 * 119.97488 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.78072 * 180.27950 * 11 10 9 35 35 H 1.08004 * 119.81049 * 179.69126 * 12 11 10 36 36 H 1.08000 * 120.02805 * 180.02562 * 13 12 11 37 37 H 0.97005 * 119.99739 * 0.02562 * 17 15 14 38 38 H 1.08991 * 109.47364 * 300.00240 * 18 17 15 39 39 H 1.09002 * 109.46702 * 60.00475 * 18 17 15 40 40 H 0.97000 * 120.00300 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0062 6 1 3.9756 0.4547 0.5837 7 6 4.0765 1.1722 -1.4450 8 16 4.0920 2.8562 0.7103 9 6 5.8317 2.6482 0.8968 10 6 6.4223 1.4198 0.6217 11 6 7.7851 1.2616 0.7624 12 6 8.5743 2.3184 1.1900 13 6 8.0071 3.5411 1.4730 14 6 6.6287 3.7203 1.3296 15 6 6.0153 5.0263 1.6302 16 8 4.8154 5.1781 1.5037 17 7 6.7842 6.0524 2.0452 18 6 6.1746 7.3508 2.3434 19 6 7.2431 8.3182 2.7834 20 1 8.2732 7.9982 2.8352 21 6 6.9055 9.6120 3.1197 22 7 5.6509 10.0017 3.0570 23 14 8.2299 10.8114 3.6643 24 1 9.5500 10.1314 3.6493 25 1 8.2601 11.9703 2.7363 26 1 7.9326 11.2862 5.0396 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.5924 1.9332 -2.0572 31 1 5.1554 1.3262 -1.4599 32 1 3.8448 0.1843 -1.8430 33 1 5.8141 0.5904 0.2923 34 1 8.2397 0.3068 0.5431 35 1 9.6399 2.1819 1.3015 36 1 8.6271 4.3606 1.8053 37 1 7.7414 5.9315 2.1458 38 1 5.6826 7.7350 1.4500 39 1 5.4403 7.2329 3.1403 40 1 5.4133 10.9118 3.2940 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:05 Heat of formation + Delta-G solvation = -90.169131 kcal Electronic energy + Delta-G solvation = -24098.952421 eV Core-core repulsion = 20391.441826 eV Total energy + Delta-G solvation = -3707.510595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65663 -39.74117 -37.90432 -36.73748 -34.32748 -33.87459 -32.49084 -31.11489 -30.91927 -28.10110 -27.28184 -24.96261 -24.10119 -22.86283 -22.23965 -21.24190 -19.90626 -18.59769 -17.80110 -17.32541 -16.70595 -16.38527 -16.07982 -15.58934 -15.24333 -14.84972 -14.57949 -14.48931 -14.38123 -14.17930 -13.87762 -13.60445 -13.00834 -12.89346 -12.70964 -12.58314 -12.38526 -12.12105 -11.97982 -11.76513 -11.74623 -11.16923 -11.03964 -10.98194 -10.92091 -10.63777 -10.43495 -10.13257 -9.80035 -9.38480 -9.05404 -8.83016 -8.75792 -7.97039 -7.26522 -6.16721 -4.24038 0.87320 1.14499 1.22287 1.98589 2.42940 2.55641 3.18302 3.23730 3.30620 3.33544 3.98111 4.01357 4.35405 4.43158 4.48803 4.63104 4.75408 4.82466 4.84566 4.93373 5.04171 5.19501 5.22255 5.24124 5.28943 5.37410 5.41755 5.55816 5.76411 5.79397 6.08127 6.09855 6.17233 6.34030 6.71712 7.29082 7.35891 7.48587 7.50885 7.63905 7.95538 8.55169 8.73868 8.99927 9.42225 10.93430 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003051 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.054557 B = 9175.053795 C =10745.216126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.486 3.514 4 O -0.481 6.481 5 C -0.156 4.156 6 H 0.118 0.882 7 C -0.142 4.142 8 S 0.089 5.911 9 C -0.064 4.064 10 C -0.150 4.150 11 C -0.081 4.081 12 C -0.136 4.136 13 C -0.066 4.066 14 C -0.111 4.111 15 C 0.532 3.468 16 O -0.523 6.523 17 N -0.701 5.701 18 C 0.249 3.751 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.390 0.610 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 -23.897 -7.141 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.326 3.674 4 O -0.367 6.367 5 C -0.284 4.284 6 H 0.136 0.864 7 C -0.200 4.200 8 S 0.336 5.664 9 C -0.179 4.179 10 C -0.174 4.174 11 C -0.101 4.101 12 C -0.157 4.157 13 C -0.086 4.086 14 C -0.122 4.122 15 C 0.317 3.683 16 O -0.404 6.404 17 N -0.348 5.348 18 C 0.128 3.872 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.224 0.776 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.887 -22.346 -6.950 23.478 hybrid contribution 1.842 -0.445 0.134 1.900 sum -0.045 -22.792 -6.816 23.789 Atomic orbital electron populations 1.23317 0.75912 1.03740 1.02936 1.86479 1.23655 1.32978 1.84312 1.22587 0.90174 0.81755 0.72913 1.90752 1.66405 1.35955 1.43540 1.23820 0.92172 1.08179 1.04185 0.86360 1.22021 1.02749 1.03440 0.91808 1.88229 0.95952 1.08191 1.74034 1.22340 0.99255 0.95718 1.00578 1.21123 0.95981 0.95615 1.04726 1.21147 0.93168 0.98850 0.96979 1.21073 1.00181 0.93014 1.01478 1.21364 0.93174 0.97855 0.96241 1.19911 0.93681 0.93806 1.04770 1.18160 0.87060 0.83927 0.79150 1.90656 1.14168 1.81904 1.53627 1.46372 1.10732 1.12830 1.64915 1.19184 0.94220 0.76897 0.96849 1.21234 0.93838 0.95982 1.47171 0.91845 1.24949 0.95736 0.98146 0.95158 1.69988 1.16578 1.18441 1.47085 0.86359 0.81399 0.80786 0.78352 1.19635 1.20779 1.20779 0.91717 0.87959 0.91575 0.90581 0.90121 0.91149 0.85358 0.85555 0.85344 0.84814 0.77558 0.95165 0.95188 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.84 10.57 -39.26 -0.41 -4.26 16 3 C 0.49 6.39 7.08 36.01 0.25 6.65 16 4 O -0.48 -8.02 15.89 -18.75 -0.30 -8.31 16 5 C -0.16 -1.82 2.50 -27.88 -0.07 -1.89 16 6 H 0.12 1.11 6.86 -51.93 -0.36 0.75 16 7 C -0.14 -1.34 8.69 37.16 0.32 -1.02 16 8 S 0.09 1.48 17.51 -107.50 -1.88 -0.41 16 9 C -0.06 -0.95 6.03 -38.46 -0.23 -1.18 16 10 C -0.15 -1.67 8.04 -39.40 -0.32 -1.98 16 11 C -0.08 -0.78 10.03 -39.55 -0.40 -1.17 16 12 C -0.14 -1.39 10.02 -39.61 -0.40 -1.79 16 13 C -0.07 -0.85 9.53 -39.21 -0.37 -1.23 16 14 C -0.11 -1.84 5.89 -104.79 -0.62 -2.45 16 15 C 0.53 11.16 7.75 -12.54 -0.10 11.06 16 16 O -0.52 -12.77 13.77 5.27 0.07 -12.70 16 17 N -0.70 -15.03 5.50 -62.58 -0.34 -15.37 16 18 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 19 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 20 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.88 -26.13 13.29 55.43 0.74 -25.39 16 23 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.72 6.10 -51.93 -0.32 0.41 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.13 1.11 4.98 -52.49 -0.26 0.85 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 1.54 6.40 -52.49 -0.34 1.20 16 37 H 0.39 7.10 6.35 -40.82 -0.26 6.84 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -34.66 353.34 -7.99 -42.65 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.87 Total: 3.09 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.30 Total: -0.44 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.39 Total: -40.77 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.64 Total: -25.27 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.88 Total: -0.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.66 -7.99 -42.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.516 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds