Wall clock time and date at job start Tue Mar 31 2020 13:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99907 * 2 1 4 4 O 1.20829 * 120.00535 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00154 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47275 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47282 * 304.99762 * 6 5 3 8 8 C 1.52998 * 109.47156 * 184.99834 * 6 5 3 9 9 N 1.46493 * 109.47096 * 64.99883 * 6 5 3 10 10 C 1.34783 * 120.00266 * 204.99727 * 9 6 5 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 6 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 6 13 13 C 1.39674 * 120.09834 * 0.02598 * 12 10 9 14 14 C 1.38046 * 120.04015 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.23908 * 359.76355 * 14 13 12 16 16 C 1.39179 * 120.20513 * 0.51284 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.73865 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47076 * 59.99906 * 22 20 18 24 24 H 1.48496 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46962 * 299.99839 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.47003 * 16 15 14 27 27 H 1.09001 * 109.47248 * 60.00052 * 1 2 3 28 28 H 1.08991 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47178 * 300.00282 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99362 * 5 3 2 31 31 H 1.09005 * 109.46840 * 299.99894 * 5 3 2 32 32 H 1.09005 * 109.47089 * 59.99800 * 8 6 5 33 33 H 1.08997 * 109.47405 * 179.97438 * 8 6 5 34 34 H 1.08996 * 109.47315 * 300.00346 * 8 6 5 35 35 H 0.97000 * 120.00523 * 25.00430 * 9 6 5 36 36 H 1.08002 * 119.98410 * 359.97438 * 13 12 10 37 37 H 1.07996 * 119.87866 * 180.02562 * 14 13 12 38 38 H 1.08006 * 119.89861 * 180.27092 * 15 14 13 39 39 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5376 3.2575 -0.8429 8 6 5.5227 2.8238 -0.1274 9 7 3.5792 3.3762 1.2506 10 6 3.3824 4.7087 1.2982 11 8 3.5537 5.3843 0.3023 12 6 2.9582 5.3488 2.5617 13 6 2.7613 4.5747 3.7075 14 6 2.3657 5.1736 4.8867 15 6 2.1676 6.5401 4.9408 16 6 2.3553 7.3204 3.8037 17 16 2.0947 9.0614 3.8765 18 6 0.4256 9.1446 3.3183 19 1 -0.1285 8.2358 3.1350 20 6 -0.1771 10.3775 3.1144 21 7 0.4979 11.4849 3.3384 22 14 -1.9470 10.4655 2.5234 23 1 -2.8317 9.7921 3.5077 24 1 -2.3522 11.8873 2.3843 25 1 -2.0637 9.7871 1.2075 26 6 2.7536 6.7266 2.6132 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 5.8358 2.3519 -1.0588 33 1 5.8317 3.8690 -0.1282 34 1 5.9852 2.3084 0.7143 35 1 3.4423 2.8371 2.0453 36 1 2.9186 3.5068 3.6710 37 1 2.2146 4.5726 5.7711 38 1 1.8624 7.0035 5.8674 39 1 0.0766 12.3470 3.1955 40 1 2.9041 7.3301 1.7302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430764203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:37 Heat of formation + Delta-G solvation = -103.934859 kcal Electronic energy + Delta-G solvation = -24191.761824 eV Core-core repulsion = 20483.654302 eV Total energy + Delta-G solvation = -3708.107522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90036 -39.85091 -37.97324 -36.92770 -35.72420 -32.47565 -32.34874 -30.58504 -30.26554 -29.19746 -27.30777 -25.53366 -24.05958 -22.50941 -21.99900 -20.78355 -20.39396 -18.31058 -17.90379 -17.37664 -17.03297 -16.78448 -16.21628 -15.61694 -15.10747 -14.82005 -14.73750 -14.45569 -14.03979 -13.90368 -13.63611 -13.40896 -13.35801 -12.98197 -12.66882 -12.51284 -12.35579 -12.25139 -12.13813 -11.63113 -11.32820 -11.12494 -11.10098 -11.08026 -11.03754 -10.73650 -10.67624 -9.94035 -9.70046 -9.15020 -9.11822 -8.97550 -8.53561 -7.99190 -6.67755 -6.25166 -3.98917 1.22785 1.71326 1.91819 2.35239 3.09018 3.12025 3.25326 3.27559 3.29944 3.50907 4.12593 4.17107 4.31182 4.42343 4.66426 4.80315 4.89103 4.89404 4.94457 5.10282 5.10557 5.11941 5.18212 5.23819 5.28367 5.42767 5.51068 5.70966 5.81120 5.92130 5.97232 6.03234 6.09089 6.29889 6.42326 6.63814 6.67763 6.97603 7.23829 7.45183 7.54018 7.61037 8.36215 8.38217 9.20668 10.81543 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003126 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.093206 B = 8956.242790 C = 9712.781415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.449 3.551 4 O -0.485 6.485 5 C -0.122 4.122 6 C 0.153 3.847 7 H 0.099 0.901 8 C -0.163 4.163 9 N -0.723 5.723 10 C 0.571 3.429 11 O -0.533 6.533 12 C -0.151 4.151 13 C -0.090 4.090 14 C -0.142 4.142 15 C -0.056 4.056 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.871 5.871 22 Si 0.920 3.080 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.019 4.019 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -25.478 -3.254 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.291 3.709 4 O -0.370 6.370 5 C -0.160 4.160 6 C 0.048 3.952 7 H 0.117 0.883 8 C -0.221 4.221 9 N -0.376 5.376 10 C 0.360 3.640 11 O -0.410 6.410 12 C -0.156 4.156 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.093 0.907 20 C -0.135 4.135 21 N -0.506 5.506 22 Si 0.746 3.254 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.041 4.041 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.009 -23.558 -3.676 24.852 hybrid contribution -2.261 -1.315 -0.343 2.638 sum 4.748 -24.873 -4.018 25.639 Atomic orbital electron populations 1.23270 0.76094 1.03609 1.02861 1.86480 1.23646 1.33583 1.84434 1.23756 0.92192 0.81585 0.73384 1.90806 1.66876 1.35983 1.43330 1.21799 0.88165 0.99138 1.06901 1.20727 0.95254 0.89963 0.89248 0.88292 1.22185 0.94071 1.03746 1.02114 1.45810 1.71125 1.07996 1.12684 1.18289 0.75976 0.81465 0.88258 1.90759 1.51043 1.63042 1.36118 1.19865 1.07631 0.94901 0.93219 1.21102 0.98789 0.98335 0.92649 1.21039 1.02349 0.95158 0.97588 1.21940 0.94347 0.92938 0.98524 1.22841 1.00882 1.03639 0.94357 1.83563 1.18673 0.91367 1.86421 1.22807 0.95996 0.95424 1.52510 0.90680 1.24992 0.99148 0.94615 0.94746 1.69977 1.37056 0.97684 1.45904 0.86186 0.82423 0.77294 0.79491 1.19824 1.20720 1.19777 1.21946 0.91561 0.92502 0.98050 0.91819 0.88123 0.91736 0.86063 0.87086 0.91348 0.91024 0.92113 0.77000 0.86780 0.85947 0.85113 0.92023 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.20 10.57 -39.25 -0.41 -3.62 16 3 C 0.45 4.48 7.82 36.01 0.28 4.77 16 4 O -0.48 -6.98 15.10 -18.75 -0.28 -7.26 16 5 C -0.12 -0.78 5.35 -27.88 -0.15 -0.93 16 6 C 0.15 1.51 2.14 -67.94 -0.15 1.36 16 7 H 0.10 1.28 7.39 -51.93 -0.38 0.89 16 8 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 9 N -0.72 -8.72 4.17 -54.75 -0.23 -8.95 16 10 C 0.57 9.74 7.74 -12.32 -0.10 9.64 16 11 O -0.53 -11.00 16.01 5.32 0.09 -10.91 16 12 C -0.15 -2.69 5.87 -105.00 -0.62 -3.31 16 13 C -0.09 -1.30 9.54 -39.12 -0.37 -1.67 16 14 C -0.14 -2.11 10.02 -39.67 -0.40 -2.51 16 15 C -0.06 -1.04 9.79 -39.25 -0.38 -1.43 16 16 C -0.11 -2.35 5.45 -39.00 -0.21 -2.57 16 17 S -0.03 -0.92 21.40 -107.50 -2.30 -3.22 16 18 C -0.52 -15.06 9.46 30.92 0.29 -14.77 16 19 H 0.08 2.17 7.79 -52.49 -0.41 1.76 16 20 C 0.07 2.12 5.49 -17.46 -0.10 2.02 16 21 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 22 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.02 -0.40 9.34 -38.92 -0.36 -0.77 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 3.74 6.63 -40.82 -0.27 3.47 16 36 H 0.11 1.19 6.40 -52.49 -0.34 0.85 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.14 3.19 7.65 -52.49 -0.40 2.79 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -36.43 364.80 -7.94 -44.37 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.16 Total: 2.10 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.84 Total: -9.79 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.51 Total: -34.13 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.61 Total: -21.79 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.43 -7.94 -44.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430764203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.566 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds