Wall clock time and date at job start Tue Mar 31 2020 13:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34237 * 116.99743 * 2 1 4 4 O 1.20819 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99633 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46689 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47324 * 55.00084 * 6 5 3 8 8 C 1.52998 * 109.46875 * 174.99978 * 6 5 3 9 9 N 1.46492 * 109.47185 * 295.00009 * 6 5 3 10 10 C 1.34784 * 120.00217 * 155.00420 * 9 6 5 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 6 12 12 C 1.47860 * 119.99972 * 179.97438 * 10 9 6 13 13 C 1.39661 * 120.10534 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.04191 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67598 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46857 * 120.00071 * 22 20 18 25 25 H 1.48498 * 109.46876 * 239.99864 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47467 * 300.00134 * 1 2 3 29 29 H 1.09004 * 109.47199 * 60.00324 * 1 2 3 30 30 H 1.08997 * 109.47427 * 59.99994 * 5 3 2 31 31 H 1.08995 * 109.47285 * 299.99848 * 5 3 2 32 32 H 1.08998 * 109.47175 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47527 * 299.99839 * 8 6 5 34 34 H 1.09004 * 109.47509 * 60.00058 * 8 6 5 35 35 H 0.96996 * 120.00373 * 334.99555 * 9 6 5 36 36 H 1.08002 * 119.98248 * 0.02562 * 13 12 10 37 37 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 38 38 H 1.08006 * 119.89818 * 180.31471 * 15 14 13 39 39 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 1 3.5375 3.2583 0.8411 8 6 5.5226 2.8239 0.1261 9 7 3.5792 3.3751 -1.2525 10 6 3.3824 4.7076 -1.3013 11 8 3.5537 5.3841 -0.3060 12 6 2.9583 5.3465 -2.5655 13 6 2.7614 4.5714 -3.7105 14 6 2.3659 5.1693 -4.8902 15 6 2.1566 6.5341 -4.9426 16 6 2.3553 7.3170 -3.8091 17 16 2.0948 9.0580 -3.8835 18 6 3.7400 9.6002 -4.2056 19 1 4.5234 8.8766 -4.3766 20 6 4.0293 10.9566 -4.2397 21 7 3.0746 11.8385 -4.0319 22 14 5.7735 11.5313 -4.5820 23 1 6.6534 10.3517 -4.7804 24 1 5.7866 12.3709 -5.8068 25 1 6.2670 12.3282 -3.4302 26 6 2.7537 6.7243 -2.6181 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 5.8316 3.8692 0.1260 33 1 5.8357 2.3530 1.0579 34 1 5.9853 2.3078 -0.7152 35 1 3.4424 2.8354 -2.0467 36 1 2.9187 3.5036 -3.6730 37 1 2.2149 4.5675 -5.7741 38 1 1.8423 6.9955 -5.8672 39 1 3.2769 12.7869 -4.0554 40 1 2.9047 7.3287 -1.7358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430764204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:40 Heat of formation + Delta-G solvation = -104.084665 kcal Electronic energy + Delta-G solvation = -24120.747886 eV Core-core repulsion = 20412.633868 eV Total energy + Delta-G solvation = -3708.114018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91937 -39.85469 -37.97493 -36.94411 -35.73013 -32.48532 -32.35029 -30.58511 -30.26895 -29.20172 -27.32352 -25.54723 -24.05978 -22.51248 -22.00599 -20.79388 -20.39450 -18.31540 -17.92457 -17.38711 -17.04670 -16.80130 -16.22373 -15.61728 -15.09657 -14.83091 -14.75751 -14.45732 -14.05210 -13.91420 -13.65941 -13.40877 -13.35231 -12.92879 -12.74947 -12.52002 -12.37832 -12.21147 -12.14133 -11.64249 -11.32331 -11.12820 -11.11924 -11.09534 -11.06277 -10.75737 -10.67565 -9.92517 -9.69487 -9.15488 -9.14144 -8.97553 -8.53510 -7.98649 -6.68158 -6.26250 -3.99758 1.22852 1.71381 1.89593 2.33320 3.06245 3.16213 3.21319 3.25706 3.30772 3.50583 4.11310 4.17032 4.30610 4.41326 4.65900 4.77359 4.86150 4.89299 4.94016 5.09756 5.10796 5.11569 5.18575 5.21496 5.28236 5.43745 5.50687 5.71185 5.81200 5.92061 5.98893 6.02887 6.07349 6.29888 6.42387 6.63786 6.67760 6.97552 7.23819 7.42917 7.53942 7.60209 8.35491 8.38196 9.19607 10.80571 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002814 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.716770 B = 9949.610693 C =10620.187119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.450 3.550 4 O -0.486 6.486 5 C -0.122 4.122 6 C 0.154 3.846 7 H 0.099 0.901 8 C -0.164 4.164 9 N -0.723 5.723 10 C 0.572 3.428 11 O -0.533 6.533 12 C -0.151 4.151 13 C -0.090 4.090 14 C -0.142 4.142 15 C -0.056 4.056 16 C -0.106 4.106 17 S -0.036 6.036 18 C -0.518 4.518 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.019 4.019 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.269 0.731 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -26.383 4.974 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.292 3.708 4 O -0.371 6.371 5 C -0.160 4.160 6 C 0.049 3.951 7 H 0.117 0.883 8 C -0.222 4.222 9 N -0.376 5.376 10 C 0.360 3.640 11 O -0.410 6.410 12 C -0.156 4.156 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.078 4.078 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.665 4.665 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.041 4.041 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.079 0.921 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.084 -24.710 5.849 25.416 hybrid contribution 1.837 -0.727 -0.748 2.113 sum 0.754 -25.437 5.102 25.955 Atomic orbital electron populations 1.23269 0.76125 1.03618 1.02812 1.86488 1.23629 1.33595 1.84424 1.23753 0.92184 0.81559 0.73304 1.90789 1.66875 1.36002 1.43430 1.21804 0.88145 0.99163 1.06924 1.20723 0.95268 0.89945 0.89205 0.88288 1.22192 0.94077 1.03812 1.02120 1.45810 1.71126 1.08001 1.12684 1.18287 0.75994 0.81447 0.88250 1.90758 1.51048 1.62949 1.36208 1.19865 1.07577 0.94906 0.93268 1.21099 0.98790 0.98343 0.92643 1.21038 1.02383 0.95185 0.97525 1.21939 0.94712 0.93043 0.98061 1.22836 1.01138 1.03466 0.94253 1.83608 1.15114 0.88229 1.93194 1.22878 0.93723 0.94402 1.55517 0.90580 1.25009 0.98525 0.95532 0.94577 1.69998 1.32237 1.01904 1.46436 0.86066 0.82409 0.78734 0.78088 1.19504 1.20498 1.20442 1.21947 0.91546 0.92421 0.98144 0.88129 0.91831 0.91752 0.87079 0.86048 0.90995 0.91341 0.92105 0.77000 0.86780 0.85947 0.85114 0.92129 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.05 10.57 -39.28 -0.41 -3.46 16 3 C 0.45 4.30 7.82 36.01 0.28 4.58 16 4 O -0.49 -6.66 15.10 -18.74 -0.28 -6.94 16 5 C -0.12 -0.77 5.35 -27.88 -0.15 -0.92 16 6 C 0.15 1.51 2.14 -67.93 -0.15 1.37 16 7 H 0.10 1.26 7.39 -51.93 -0.38 0.87 16 8 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 9 N -0.72 -8.72 4.17 -54.75 -0.23 -8.95 16 10 C 0.57 9.73 7.74 -12.32 -0.10 9.64 16 11 O -0.53 -10.98 16.00 5.32 0.09 -10.90 16 12 C -0.15 -2.69 5.87 -105.00 -0.62 -3.31 16 13 C -0.09 -1.30 9.54 -39.12 -0.37 -1.67 16 14 C -0.14 -2.11 10.02 -39.67 -0.40 -2.51 16 15 C -0.06 -1.04 9.79 -39.25 -0.38 -1.43 16 16 C -0.11 -2.35 5.45 -39.00 -0.21 -2.56 16 17 S -0.04 -0.95 21.40 -107.50 -2.30 -3.25 16 18 C -0.52 -14.83 9.46 30.92 0.29 -14.54 16 19 H 0.08 2.16 7.79 -52.49 -0.41 1.76 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 22 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.02 -0.40 9.34 -38.92 -0.36 -0.77 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 3.74 6.63 -40.82 -0.27 3.46 16 36 H 0.11 1.19 6.40 -52.49 -0.34 0.85 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.14 3.19 7.65 -52.49 -0.40 2.79 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -36.17 364.80 -7.94 -44.11 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.16 Total: 2.13 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.84 Total: -9.87 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.51 Total: -34.00 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.61 Total: -21.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.17 -7.94 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430764204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.975 kcal (2) G-P(sol) polarization free energy of solvation -36.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds