Wall clock time and date at job start Tue Mar 31 2020 13:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34237 * 116.99743 * 2 1 4 4 O 1.20819 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99633 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46689 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47324 * 55.00084 * 6 5 3 8 8 C 1.52998 * 109.46875 * 174.99978 * 6 5 3 9 9 N 1.46492 * 109.47185 * 295.00009 * 6 5 3 10 10 C 1.34784 * 120.00217 * 155.00420 * 9 6 5 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 6 12 12 C 1.47860 * 119.99972 * 179.97438 * 10 9 6 13 13 C 1.39661 * 120.10534 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.04191 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67598 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46857 * 120.00071 * 22 20 18 25 25 H 1.48498 * 109.46876 * 239.99864 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47467 * 300.00134 * 1 2 3 29 29 H 1.09004 * 109.47199 * 60.00324 * 1 2 3 30 30 H 1.08997 * 109.47427 * 59.99994 * 5 3 2 31 31 H 1.08995 * 109.47285 * 299.99848 * 5 3 2 32 32 H 1.08998 * 109.47175 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47527 * 299.99839 * 8 6 5 34 34 H 1.09004 * 109.47509 * 60.00058 * 8 6 5 35 35 H 0.96996 * 120.00373 * 334.99555 * 9 6 5 36 36 H 1.08002 * 119.98248 * 0.02562 * 13 12 10 37 37 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 38 38 H 1.08006 * 119.89818 * 180.31471 * 15 14 13 39 39 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 1 3.5375 3.2583 0.8411 8 6 5.5226 2.8239 0.1261 9 7 3.5792 3.3751 -1.2525 10 6 3.3824 4.7076 -1.3013 11 8 3.5537 5.3841 -0.3060 12 6 2.9583 5.3465 -2.5655 13 6 2.7614 4.5714 -3.7105 14 6 2.3659 5.1693 -4.8902 15 6 2.1566 6.5341 -4.9426 16 6 2.3553 7.3170 -3.8091 17 16 2.0948 9.0580 -3.8835 18 6 3.7400 9.6002 -4.2056 19 1 4.5234 8.8766 -4.3766 20 6 4.0293 10.9566 -4.2397 21 7 3.0746 11.8385 -4.0319 22 14 5.7735 11.5313 -4.5820 23 1 6.6534 10.3517 -4.7804 24 1 5.7866 12.3709 -5.8068 25 1 6.2670 12.3282 -3.4302 26 6 2.7537 6.7243 -2.6181 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 5.8316 3.8692 0.1260 33 1 5.8357 2.3530 1.0579 34 1 5.9853 2.3078 -0.7152 35 1 3.4424 2.8354 -2.0467 36 1 2.9187 3.5036 -3.6730 37 1 2.2149 4.5675 -5.7741 38 1 1.8423 6.9955 -5.8672 39 1 3.2769 12.7869 -4.0554 40 1 2.9047 7.3287 -1.7358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430764204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:39 Heat of formation + Delta-G solvation = -128.602400 kcal Electronic energy + Delta-G solvation = -24121.811054 eV Core-core repulsion = 20412.633868 eV Total energy + Delta-G solvation = -3709.177187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74228 -41.04701 -39.27912 -37.78990 -36.71433 -34.66903 -33.49324 -31.98605 -31.48741 -29.90157 -27.87303 -27.76314 -25.31631 -23.80020 -23.02280 -21.73187 -21.52025 -20.03032 -19.01430 -18.61881 -17.87500 -17.59236 -17.24796 -16.95182 -16.84537 -16.58391 -16.01458 -15.75027 -15.30905 -14.84412 -14.78078 -14.63497 -14.44147 -14.12067 -13.87730 -13.47330 -13.29244 -13.09045 -13.06656 -12.98957 -12.94431 -12.88161 -12.66039 -12.40442 -12.05607 -11.79079 -11.74192 -11.53227 -11.26889 -11.10391 -10.76955 -10.27649 -9.91310 -9.71322 -8.82591 -8.40615 -6.21046 -0.18485 0.23726 1.20162 1.28326 1.35709 1.45700 1.63499 1.74907 1.83158 2.07037 2.23798 2.80188 2.92380 3.40437 3.49255 3.66080 3.81730 3.92295 3.99494 4.14649 4.28179 4.31944 4.33672 4.35806 4.46235 4.55635 4.65535 4.66025 4.72095 4.78812 4.89767 5.02178 5.21175 5.29414 5.31304 5.37150 5.42211 5.44568 5.48861 5.84755 6.14712 6.46173 6.75054 6.99505 7.17337 8.66938 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002814 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.716770 B = 9949.610693 C =10620.187119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.451 3.549 4 O -0.538 6.538 5 C -0.109 4.109 6 C 0.147 3.853 7 H 0.062 0.938 8 C -0.157 4.157 9 N -0.700 5.700 10 C 0.566 3.434 11 O -0.583 6.583 12 C -0.157 4.157 13 C -0.064 4.064 14 C -0.120 4.120 15 C -0.064 4.064 16 C -0.128 4.128 17 S -0.098 6.098 18 C -0.534 4.534 19 H 0.067 0.933 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.995 3.005 23 H -0.265 1.265 24 H -0.264 1.264 25 H -0.272 1.272 26 C -0.048 4.048 27 H 0.132 0.868 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.171 0.829 37 H 0.177 0.823 38 H 0.137 0.863 39 H 0.274 0.726 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -31.166 3.444 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.295 3.705 4 O -0.427 6.427 5 C -0.147 4.147 6 C 0.043 3.957 7 H 0.080 0.920 8 C -0.215 4.215 9 N -0.352 5.352 10 C 0.354 3.646 11 O -0.464 6.464 12 C -0.162 4.162 13 C -0.083 4.083 14 C -0.139 4.139 15 C -0.085 4.085 16 C -0.239 4.239 17 S 0.137 5.863 18 C -0.681 4.681 19 H 0.085 0.915 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.816 3.184 23 H -0.189 1.189 24 H -0.189 1.189 25 H -0.198 1.198 26 C -0.070 4.070 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.250 0.750 36 H 0.188 0.812 37 H 0.195 0.805 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.663 -29.575 4.302 29.894 hybrid contribution 1.207 0.520 -0.223 1.333 sum 1.870 -29.056 4.079 29.400 Atomic orbital electron populations 1.23469 0.75384 1.05483 1.02067 1.86494 1.24411 1.32847 1.83876 1.24416 0.93385 0.81055 0.71655 1.90794 1.68199 1.37644 1.46050 1.21872 0.85798 0.96515 1.10476 1.20890 0.96195 0.91833 0.86777 0.91989 1.22137 0.92632 1.01971 1.04760 1.45669 1.69019 1.06201 1.14336 1.18303 0.75968 0.82990 0.87312 1.90735 1.53491 1.64485 1.37718 1.20027 1.07325 0.93608 0.95245 1.21676 0.95299 1.00644 0.90672 1.21556 0.99391 0.93534 0.99424 1.22074 0.94785 0.94805 0.96827 1.22492 1.04845 1.00307 0.96245 1.83493 1.15423 0.93804 1.93591 1.23083 0.94216 0.94901 1.55915 0.91459 1.26048 1.03225 0.95430 0.94014 1.70120 1.34583 1.02374 1.47265 0.84966 0.76588 0.78341 0.78483 1.18936 1.18887 1.19758 1.21617 0.94269 0.94294 0.96785 0.84950 0.92784 0.92407 0.83117 0.82561 0.94850 0.88643 0.89510 0.75033 0.81182 0.80532 0.84550 0.91674 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -4.92 10.57 -51.48 -0.54 -5.46 16 3 C 0.45 7.43 7.82 71.24 0.56 7.99 16 4 O -0.54 -14.36 15.10 21.98 0.33 -14.03 16 5 C -0.11 -0.91 5.35 29.85 0.16 -0.75 16 6 C 0.15 2.61 2.14 44.99 0.10 2.71 16 7 H 0.06 1.61 7.39 -2.39 -0.02 1.59 16 8 C -0.16 -2.24 9.48 71.98 0.68 -1.55 16 9 N -0.70 -15.41 4.17 -445.40 -1.86 -17.27 16 10 C 0.57 19.51 7.74 86.79 0.67 20.18 16 11 O -0.58 -25.75 16.00 -3.88 -0.06 -25.82 16 12 C -0.16 -5.57 5.87 -20.11 -0.12 -5.69 16 13 C -0.06 -1.61 9.54 22.57 0.22 -1.40 16 14 C -0.12 -3.07 10.02 22.21 0.22 -2.85 16 15 C -0.06 -2.32 9.79 22.48 0.22 -2.10 16 16 C -0.13 -5.92 5.45 22.65 0.12 -5.80 16 17 S -0.10 -5.54 21.40 -56.49 -1.21 -6.75 16 18 C -0.53 -32.16 9.46 67.94 0.64 -31.51 16 19 H 0.07 4.01 7.79 -2.91 -0.02 3.99 16 20 C 0.02 1.05 5.49 84.84 0.47 1.51 16 21 N -0.91 -55.86 13.22 21.64 0.29 -55.58 16 22 Si 0.99 45.50 29.55 68.60 2.03 47.53 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C -0.05 -2.17 9.34 22.70 0.21 -1.96 16 27 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.72 8.13 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.41 5.93 6.63 -92.71 -0.61 5.32 16 36 H 0.17 2.36 6.40 -2.91 -0.02 2.34 16 37 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.10 5.16 7.65 -2.91 -0.02 5.14 16 Total: -1.00 -89.51 364.80 4.77 -84.73 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.45 Total: 12.33 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 5.35 Total: -19.68 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.57 Total: -72.85 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.27 Total: -45.31 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -1.21 Total: -6.75 kcal Total: -89.51 4.77 -84.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430764204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.869 kcal (2) G-P(sol) polarization free energy of solvation -89.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds