Wall clock time and date at job start Tue Mar 31 2020 14:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42103 * 110.54088 * 2 1 4 4 O 1.42100 * 110.54420 * 223.24992 * 2 1 3 5 5 C 1.76201 * 104.45154 * 111.62564 * 2 1 3 6 6 C 1.37973 * 120.07542 * 115.02262 * 5 2 1 7 7 C 1.38340 * 120.14653 * 179.97438 * 6 5 2 8 8 C 1.38382 * 120.28854 * 359.72280 * 7 6 5 9 9 C 1.37938 * 120.14511 * 0.55599 * 8 7 6 10 10 C 1.39559 * 120.07104 * 295.00029 * 5 2 1 11 11 C 1.47849 * 120.14553 * 359.97438 * 10 5 2 12 12 O 1.21553 * 119.99920 * 1.64635 * 11 10 5 13 13 N 1.34779 * 119.99915 * 181.64134 * 11 10 5 14 14 C 1.46495 * 119.99576 * 184.94225 * 13 11 10 15 15 C 1.53006 * 109.46956 * 185.05598 * 14 13 11 16 16 C 1.50701 * 115.54650 * 55.89364 * 15 14 13 17 17 H 1.08005 * 119.99859 * 268.66393 * 16 15 14 18 18 C 1.37883 * 120.00072 * 88.66510 * 16 15 14 19 19 N 1.31515 * 119.99821 * 179.83977 * 18 16 15 20 20 Si 1.86792 * 119.99800 * 359.83707 * 18 16 15 21 21 H 1.48504 * 109.47076 * 91.92756 * 20 18 16 22 22 H 1.48505 * 109.47266 * 211.92954 * 20 18 16 23 23 H 1.48506 * 109.47499 * 331.92700 * 20 18 16 24 24 C 1.52991 * 117.50068 * 270.22495 * 15 14 13 25 25 C 1.52992 * 117.50030 * 201.56329 * 15 14 13 26 26 H 1.08996 * 109.46920 * 308.37171 * 1 2 3 27 27 H 1.08997 * 109.47199 * 68.37771 * 1 2 3 28 28 H 1.09009 * 109.46811 * 188.37369 * 1 2 3 29 29 H 1.07999 * 119.92840 * 0.02562 * 6 5 2 30 30 H 1.07996 * 119.85632 * 179.97438 * 7 6 5 31 31 H 1.08003 * 119.92548 * 180.28337 * 8 7 6 32 32 H 1.08006 * 120.07175 * 179.72103 * 9 8 7 33 33 H 0.96992 * 119.99920 * 4.93590 * 13 11 10 34 34 H 1.08992 * 109.47578 * 305.05575 * 14 13 11 35 35 H 1.09001 * 109.47740 * 65.06039 * 14 13 11 36 36 H 0.96994 * 119.99659 * 180.02562 * 19 18 16 37 37 H 1.09004 * 117.50275 * 359.97438 * 24 15 14 38 38 H 1.09002 * 117.50016 * 145.02119 * 24 15 14 39 39 H 1.09012 * 117.49782 * 214.98125 * 25 15 14 40 40 H 1.08997 * 117.50334 * 359.97366 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2538 -0.6288 1.5862 6 6 2.9154 -1.8349 1.6927 7 6 3.2618 -2.3297 2.9373 8 6 2.9528 -1.6170 4.0824 9 6 2.2865 -0.4127 3.9902 10 6 1.9340 0.0922 2.7375 11 6 1.2261 1.3858 2.6308 12 8 0.8947 1.8092 1.5406 13 7 0.9481 2.0956 3.7423 14 6 0.1528 3.3223 3.6481 15 6 0.0903 3.9961 5.0204 16 6 1.4224 4.3084 5.6523 17 1 1.8907 3.5895 6.3082 18 6 2.0432 5.5120 5.3930 19 7 3.2041 5.7858 5.9470 20 14 1.2353 6.7535 4.2550 21 1 0.4000 7.6865 5.0533 22 1 2.2835 7.5201 3.5347 23 1 0.3799 6.0408 3.2721 24 6 -1.0572 3.5988 5.9510 25 6 -1.0592 4.9727 5.2762 26 1 -0.3633 0.6379 0.8057 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0168 0.1497 29 1 3.1641 -2.3935 0.8025 30 1 3.7792 -3.2744 3.0152 31 1 3.2301 -2.0066 5.0508 32 1 2.0419 0.1404 4.8851 33 1 1.2744 1.7941 4.6044 34 1 0.6147 4.0007 2.9310 35 1 -0.8565 3.0766 3.3178 36 1 3.6406 6.6326 5.7649 37 1 -1.7680 2.8576 5.5855 38 1 -0.8489 3.5637 7.0203 39 1 -0.8522 5.8410 5.9019 40 1 -1.7709 5.1356 4.4668 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431151110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:44 Heat of formation + Delta-G solvation = -31.374014 kcal Electronic energy + Delta-G solvation = -25703.890855 eV Core-core repulsion = 21998.929808 eV Total energy + Delta-G solvation = -3704.961048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.29280 -38.48344 -37.28840 -36.56737 -35.57302 -33.92155 -32.19344 -31.55195 -31.32886 -29.26148 -26.95891 -25.46148 -23.70075 -23.16955 -21.83997 -20.35216 -19.59901 -18.83652 -18.10764 -16.89948 -16.56699 -15.93922 -15.81152 -15.64565 -15.33362 -15.15605 -14.94878 -14.60653 -14.44366 -13.82535 -13.26283 -13.13076 -13.11384 -12.91062 -12.71821 -12.47095 -12.39450 -12.06452 -11.79674 -11.74190 -11.52900 -11.21982 -10.91594 -10.79221 -10.56876 -10.51355 -10.26807 -9.82658 -9.62406 -9.54841 -9.26708 -9.22899 -8.75443 -8.65485 -8.41451 -6.21434 -4.27640 0.24133 0.52352 0.91693 2.79932 3.04638 3.25436 3.35217 3.38377 3.42994 3.59487 4.03974 4.36043 4.38113 4.62225 4.65862 4.69567 4.82901 4.97254 5.02240 5.07169 5.16729 5.37319 5.41943 5.55592 5.64138 5.83388 5.88415 5.91764 5.93932 5.97920 6.08824 6.10388 6.33491 6.39214 6.54569 6.61724 6.83516 6.94869 6.98858 7.60095 7.84986 8.31874 8.41311 8.76354 9.41440 10.89557 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.004335 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.030453 B = 6457.213657 C = 6978.317284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.512 3.488 3 O -0.905 6.905 4 O -0.964 6.964 5 C -0.614 4.614 6 C -0.034 4.034 7 C -0.122 4.122 8 C -0.075 4.075 9 C -0.103 4.103 10 C -0.036 4.036 11 C 0.527 3.473 12 O -0.529 6.529 13 N -0.679 5.679 14 C 0.150 3.850 15 C -0.018 4.018 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.082 3.918 19 N -0.892 5.892 20 Si 0.880 3.120 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.256 1.256 24 C -0.180 4.180 25 C -0.191 4.191 26 H 0.152 0.848 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.407 0.593 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.267 0.733 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 -16.327 -5.209 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.689 3.311 3 O -0.902 6.902 4 O -0.961 6.961 5 C -0.699 4.699 6 C -0.053 4.053 7 C -0.141 4.141 8 C -0.093 4.093 9 C -0.122 4.122 10 C -0.039 4.039 11 C 0.313 3.687 12 O -0.410 6.410 13 N -0.327 5.327 14 C 0.027 3.973 15 C -0.019 4.019 16 C -0.533 4.533 17 H 0.096 0.904 18 C -0.122 4.122 19 N -0.528 5.528 20 Si 0.708 3.292 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.180 1.180 24 C -0.217 4.217 25 C -0.229 4.229 26 H 0.170 0.830 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.244 0.756 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.033 -15.601 -6.535 17.648 hybrid contribution -0.501 0.419 0.802 1.034 sum -5.535 -15.182 -5.734 17.147 Atomic orbital electron populations 1.30409 1.25245 1.10785 1.12937 1.04926 0.78249 0.74563 0.73357 1.93661 1.77002 1.34844 1.84683 1.93517 1.78477 1.63097 1.61005 1.30899 1.12386 1.05537 1.21092 1.21004 0.92617 0.92527 0.99124 1.21482 0.99799 1.00409 0.92415 1.21433 0.94754 0.93836 0.99260 1.21562 0.97433 0.96237 0.96975 1.19727 0.97095 0.93710 0.93409 1.18370 0.80554 0.84469 0.85329 1.90755 1.53981 1.70759 1.25554 1.45674 1.52551 1.25195 1.09263 1.21280 0.92723 0.84560 0.98704 1.19622 0.91420 0.98840 0.92041 1.20122 1.00760 1.03290 1.29114 0.90416 1.24973 0.94372 0.97976 0.94837 1.69870 1.15575 1.24182 1.43141 0.86844 0.79210 0.81478 0.81694 1.20503 1.21958 1.18001 1.22900 1.02568 0.97104 0.99109 1.22931 1.02694 0.94134 1.03121 0.82967 0.85668 0.86641 0.83322 0.84729 0.84555 0.84162 0.75615 0.90770 0.93281 0.92359 0.90872 0.89350 0.89090 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.27 10.13 101.05 1.02 -6.24 16 2 S 2.51 36.74 5.14 -107.50 -0.55 36.19 16 3 O -0.90 -17.65 14.90 -67.47 -1.01 -18.66 16 4 O -0.96 -14.85 16.74 -57.54 -0.96 -15.81 16 5 C -0.61 -8.54 5.61 -39.19 -0.22 -8.76 16 6 C -0.03 -0.39 9.49 -39.64 -0.38 -0.77 16 7 C -0.12 -1.15 10.04 -39.49 -0.40 -1.55 16 8 C -0.07 -0.73 10.03 -39.64 -0.40 -1.13 16 9 C -0.10 -1.24 9.53 -39.19 -0.37 -1.62 16 10 C -0.04 -0.52 5.86 -104.97 -0.62 -1.14 16 11 C 0.53 9.21 7.38 -12.33 -0.09 9.12 16 12 O -0.53 -10.13 8.99 -19.72 -0.18 -10.31 16 13 N -0.68 -12.06 5.30 -61.25 -0.32 -12.38 16 14 C 0.15 2.97 5.36 -4.04 -0.02 2.94 16 15 C -0.02 -0.38 0.93 -155.66 -0.14 -0.52 16 16 C -0.50 -12.54 8.89 -34.44 -0.31 -12.84 16 17 H 0.08 2.10 8.06 -52.48 -0.42 1.67 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 19 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 20 Si 0.88 21.25 24.82 -169.99 -4.22 17.04 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.26 -5.90 5.68 56.52 0.32 -5.58 16 24 C -0.18 -3.20 9.93 -26.70 -0.27 -3.47 16 25 C -0.19 -3.72 7.46 -26.70 -0.20 -3.92 16 26 H 0.15 1.95 5.36 -51.93 -0.28 1.67 16 27 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.11 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.15 1.48 7.21 -52.49 -0.38 1.10 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.14 1.52 6.43 -52.48 -0.34 1.18 16 33 H 0.41 6.64 6.23 -40.82 -0.25 6.38 16 34 H 0.07 1.66 6.72 -51.93 -0.35 1.31 16 35 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.09 1.88 7.02 -51.92 -0.36 1.52 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -34.26 336.12 -8.86 -43.13 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.98 Total: 8.73 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -2.48 Total: -27.74 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.45 Total: -37.63 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -2.15 Total: -44.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.22 Total: 17.04 kcal Atomic # 16 Polarization: 36.74 SS G_CDS: -0.55 Total: 36.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.26 -8.86 -43.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431151110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.752 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds