Wall clock time and date at job start Tue Mar 31 2020 14:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99642 * 2 1 4 4 O 1.20824 * 120.00477 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99981 * 179.97438 * 3 2 1 6 6 S 1.81400 * 109.47311 * 179.97438 * 5 3 2 7 7 C 1.81400 * 102.99919 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.47132 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47394 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00009 * 179.97438 * 9 8 7 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 8 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 8 13 13 C 1.39227 * 120.28510 * 356.68670 * 12 10 9 14 14 C 1.38223 * 120.09723 * 180.28291 * 13 12 10 15 15 C 1.38826 * 120.67197 * 359.69417 * 14 13 12 16 16 C 1.37607 * 120.57000 * 0.02562 * 15 14 13 17 17 C 1.40702 * 119.88222 * 0.02562 * 16 15 14 18 18 C 1.40891 * 120.32820 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99743 * 145.79457 * 18 17 16 20 20 C 1.40273 * 119.99861 * 325.79822 * 18 17 16 21 21 N 1.30629 * 119.99711 * 340.74144 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 160.74702 * 20 18 17 23 23 H 1.48505 * 109.46791 * 269.99431 * 22 20 18 24 24 H 1.48496 * 109.47300 * 29.99461 * 22 20 18 25 25 H 1.48496 * 109.47010 * 149.99877 * 22 20 18 26 26 H 1.08999 * 109.46682 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47383 * 300.00323 * 1 2 3 28 28 H 1.09001 * 109.46944 * 60.00082 * 1 2 3 29 29 H 1.09001 * 109.47104 * 59.99894 * 5 3 2 30 30 H 1.08998 * 109.47186 * 300.00259 * 5 3 2 31 31 H 1.08999 * 109.46800 * 59.99961 * 7 6 5 32 32 H 1.09005 * 109.47077 * 300.00143 * 7 6 5 33 33 H 1.09004 * 109.47250 * 59.99742 * 8 7 6 34 34 H 1.09005 * 109.47069 * 299.99918 * 8 7 6 35 35 H 0.96994 * 119.99831 * 359.97438 * 9 8 7 36 36 H 1.08005 * 119.95480 * 359.97438 * 13 12 10 37 37 H 1.07993 * 119.66771 * 179.71616 * 14 13 12 38 38 H 1.08002 * 119.71786 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.05544 * 180.02562 * 16 15 14 40 40 H 0.97003 * 120.00596 * 354.83519 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 16 4.0806 3.0146 -0.0003 7 6 5.8913 2.9048 -0.0003 8 6 6.4876 4.3137 -0.0004 9 7 7.9499 4.2251 0.0003 10 6 8.6932 5.3494 -0.0002 11 8 8.1500 6.4374 -0.0007 12 6 10.1648 5.2601 -0.0001 13 6 10.7930 4.0196 0.0699 14 6 12.1730 3.9408 0.0757 15 6 12.9482 5.0903 0.0056 16 6 12.3562 6.3302 -0.0703 17 6 10.9534 6.4380 -0.0767 18 6 10.3373 7.7027 -0.1536 19 1 9.4055 7.8179 -0.6873 20 6 10.9344 8.8123 0.4630 21 7 11.8253 8.6367 1.4020 22 14 10.4552 10.5408 -0.0586 23 1 11.3429 10.9890 -1.1615 24 1 9.0455 10.5441 -0.5255 25 1 10.5963 11.4634 1.0963 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.9564 0.7807 -0.8891 30 1 3.9557 0.7811 0.8908 31 1 6.2228 2.3694 -0.8900 32 1 6.2229 2.3703 0.8900 33 1 6.1560 4.8487 0.8896 34 1 6.1561 4.8485 -0.8905 35 1 8.3832 3.3573 0.0011 36 1 10.2012 3.1178 0.1249 37 1 12.6530 2.9753 0.1348 38 1 14.0253 5.0108 0.0108 39 1 12.9673 7.2190 -0.1248 40 1 12.0197 7.7431 1.7253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601039072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:43 Heat of formation + Delta-G solvation = -124.762538 kcal Electronic energy + Delta-G solvation = -23297.049445 eV Core-core repulsion = 19588.038768 eV Total energy + Delta-G solvation = -3709.010678 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53004 -40.82725 -38.85175 -37.66767 -36.38487 -35.68385 -32.53633 -31.89392 -31.41422 -30.62745 -28.21289 -27.15600 -24.99596 -23.61830 -22.71283 -22.35289 -21.32584 -19.96262 -18.84122 -18.35950 -17.79257 -17.77854 -17.22011 -16.69370 -16.63580 -16.51512 -15.89349 -15.79146 -15.46774 -15.25195 -14.85986 -14.68970 -14.48301 -14.11824 -13.82689 -13.70136 -13.59320 -13.23049 -13.00355 -12.94222 -12.79982 -12.64893 -12.48771 -12.06540 -11.94028 -11.89263 -11.79077 -11.46039 -11.07352 -10.95844 -10.38095 -10.07524 -9.60719 -9.48673 -9.10188 -8.83126 -6.46176 0.09631 0.40271 0.91533 1.00059 1.34262 1.45747 1.61736 1.72120 1.76476 2.24316 2.30404 2.51899 2.74158 3.56405 3.59147 3.70736 3.87932 3.96382 4.19707 4.23358 4.27926 4.28437 4.30022 4.36263 4.46304 4.68375 4.68997 4.73580 4.88430 4.90862 5.14524 5.22206 5.43777 5.50237 5.65701 5.71607 5.90030 5.97434 6.20891 6.34800 6.53868 6.67708 6.85583 6.91919 7.58568 8.04632 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.002258 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.317603 B =12398.779971 C =13695.084357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.477 3.523 4 O -0.526 6.526 5 C -0.090 4.090 6 S -0.230 6.230 7 C -0.092 4.092 8 C 0.143 3.857 9 N -0.722 5.722 10 C 0.558 3.442 11 O -0.580 6.580 12 C -0.283 4.283 13 C -0.039 4.039 14 C -0.243 4.243 15 C -0.072 4.072 16 C -0.226 4.226 17 C 0.095 3.905 18 C -0.511 4.511 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.817 5.817 22 Si 1.116 2.884 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.267 1.267 26 H 0.137 0.863 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.411 0.589 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -20.948 -2.267 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.320 3.680 4 O -0.415 6.415 5 C -0.238 4.238 6 S -0.005 6.005 7 C -0.240 4.240 8 C 0.018 3.982 9 N -0.378 5.378 10 C 0.351 3.649 11 O -0.461 6.461 12 C -0.288 4.288 13 C -0.058 4.058 14 C -0.262 4.262 15 C -0.091 4.091 16 C -0.245 4.245 17 C 0.090 3.910 18 C -0.539 4.539 19 H 0.097 0.903 20 C -0.219 4.219 21 N -0.441 5.441 22 Si 0.934 3.066 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.192 1.192 26 H 0.155 0.845 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.559 -17.427 -1.965 22.793 hybrid contribution 0.400 -2.566 -0.108 2.599 sum -14.159 -19.993 -2.073 24.586 Atomic orbital electron populations 1.23603 0.74260 1.05991 1.02585 1.86473 1.25215 1.31650 1.83725 1.23023 0.91351 0.81650 0.71997 1.90743 1.67517 1.37383 1.45829 1.23096 0.90822 0.98164 1.11697 1.88034 1.05306 1.08759 1.98420 1.23505 0.93082 0.99137 1.08315 1.20673 0.79930 0.95967 1.01651 1.45628 1.05696 1.08780 1.77699 1.18467 0.87732 0.83488 0.75234 1.90684 1.74449 1.29157 1.51821 1.19767 0.91406 0.95111 1.22498 1.21178 0.95214 0.95128 0.94258 1.20839 0.93379 0.98014 1.13958 1.21178 0.99587 0.92420 0.95881 1.21198 0.94144 0.97150 1.12003 1.17914 0.92122 0.93129 0.87784 1.21113 1.08773 0.94041 1.29972 0.90318 1.28435 0.91397 1.09589 0.92486 1.70470 1.25498 1.28246 1.19910 0.82998 0.77087 0.68999 0.77497 1.17864 1.20183 1.19179 0.84538 0.92020 0.91990 0.82756 0.82801 0.86519 0.86632 0.92983 0.92780 0.75150 0.84140 0.84335 0.85794 0.89396 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.35 -4.92 10.57 -51.42 -0.54 -5.46 16 3 C 0.48 8.44 7.98 71.24 0.57 9.01 16 4 O -0.53 -13.72 15.61 21.97 0.34 -13.38 16 5 C -0.09 -1.06 6.54 71.24 0.47 -0.60 16 6 S -0.23 -4.83 20.88 -56.49 -1.18 -6.01 16 7 C -0.09 -1.57 6.05 71.98 0.44 -1.13 16 8 C 0.14 4.07 5.68 86.38 0.49 4.56 16 9 N -0.72 -23.08 5.51 -466.37 -2.57 -25.64 16 10 C 0.56 25.66 7.73 86.67 0.67 26.33 16 11 O -0.58 -32.25 13.56 -4.06 -0.06 -32.31 16 12 C -0.28 -13.41 5.92 -19.70 -0.12 -13.53 16 13 C -0.04 -1.45 9.53 22.50 0.21 -1.24 16 14 C -0.24 -8.77 10.03 22.41 0.22 -8.55 16 15 C -0.07 -2.96 10.01 22.26 0.22 -2.74 16 16 C -0.23 -11.32 7.87 22.72 0.18 -11.15 16 17 C 0.09 5.15 5.17 -21.11 -0.11 5.05 16 18 C -0.51 -29.84 7.65 23.41 0.18 -29.66 16 19 H 0.08 4.90 5.92 -2.91 -0.02 4.89 16 20 C 0.00 -0.21 5.04 85.37 0.43 0.22 16 21 N -0.82 -46.02 12.57 21.88 0.28 -45.74 16 22 Si 1.12 48.12 29.98 68.60 2.06 50.18 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 28 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 29 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.41 9.72 6.51 -92.71 -0.60 9.12 16 36 H 0.14 3.73 6.41 -2.91 -0.02 3.71 16 37 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.09 4.65 6.94 -2.91 -0.02 4.63 16 40 H 0.28 16.36 6.55 -92.71 -0.61 15.75 16 Total: -1.00 -79.15 357.47 4.01 -75.13 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.63 Total: 25.17 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 5.05 Total: -21.95 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -2.29 Total: -71.38 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.26 Total: -51.14 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.06 Total: 50.18 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.18 Total: -6.01 kcal Total: -79.15 4.01 -75.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.628 kcal (2) G-P(sol) polarization free energy of solvation -79.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds