Wall clock time and date at job start Tue Mar 31 2020 13:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46833 * 2 1 4 4 C 1.50703 * 109.47215 * 119.99710 * 2 1 3 5 5 H 1.07993 * 120.00238 * 120.00490 * 4 2 1 6 6 C 1.37883 * 119.99534 * 300.00039 * 4 2 1 7 7 N 1.31510 * 120.00145 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99627 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47084 * 90.00044 * 8 6 4 10 10 H 1.48504 * 109.46930 * 210.00294 * 8 6 4 11 11 H 1.48505 * 109.47072 * 329.99690 * 8 6 4 12 12 N 1.46496 * 109.47578 * 239.99684 * 2 1 3 13 13 C 1.34778 * 119.99785 * 84.72130 * 12 2 1 14 14 O 1.21286 * 120.00103 * 355.46020 * 13 12 2 15 15 C 1.50704 * 119.99746 * 175.46220 * 13 12 2 16 16 S 1.81391 * 115.54949 * 313.98394 * 15 13 12 17 17 O 1.42099 * 110.54503 * 55.46715 * 16 15 13 18 18 O 1.42106 * 110.54549 * 192.21072 * 16 15 13 19 19 C 1.76199 * 104.45237 * 303.84156 * 16 15 13 20 20 C 1.38232 * 119.99626 * 275.09042 * 19 16 15 21 21 C 1.38237 * 119.99934 * 179.78709 * 20 19 16 22 22 C 1.38237 * 119.99752 * 0.44069 * 21 20 19 23 23 C 1.38230 * 120.00089 * 359.81629 * 22 21 20 24 24 C 1.38227 * 120.00178 * 95.36607 * 19 16 15 25 25 C 1.53006 * 117.49648 * 168.31559 * 15 13 12 26 26 C 1.52998 * 117.49719 * 99.65732 * 15 13 12 27 27 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47386 * 300.00141 * 1 2 3 29 29 H 1.08996 * 109.46977 * 60.00620 * 1 2 3 30 30 H 0.97009 * 119.99810 * 179.97438 * 7 6 4 31 31 H 0.96991 * 120.00052 * 265.00420 * 12 2 1 32 32 H 1.07999 * 120.00564 * 359.97438 * 20 19 16 33 33 H 1.08004 * 120.00302 * 180.27374 * 21 20 19 34 34 H 1.08006 * 119.99755 * 179.83229 * 22 21 20 35 35 H 1.07995 * 120.00517 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.00152 * 359.97438 * 24 19 16 37 37 H 1.08998 * 117.49635 * 0.02562 * 25 15 13 38 38 H 1.09000 * 117.49449 * 145.02335 * 25 15 13 39 39 H 1.09005 * 117.50050 * 214.97361 * 26 15 13 40 40 H 1.09003 * 117.50023 * 359.97438 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3225 -1.1192 4.0081 9 1 3.6304 -0.5436 4.4119 10 1 1.3444 -0.9486 5.1124 11 1 2.4880 -2.5651 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 2.1419 -0.0197 -2.3584 14 8 1.7716 1.1327 -2.4357 15 6 2.7399 -0.7014 -3.5621 16 16 4.2616 -1.6395 -3.2543 17 8 4.0555 -2.6015 -2.2290 18 8 4.8832 -1.9979 -4.4808 19 6 5.3630 -0.4672 -2.5351 20 6 6.1190 0.3586 -3.3458 21 6 6.9799 1.2814 -2.7816 22 6 7.0914 1.3721 -1.4068 23 6 6.3393 0.5427 -0.5961 24 6 5.4752 -0.3771 -1.1603 25 6 2.6063 0.0047 -4.9129 26 6 1.7752 -1.2463 -4.6172 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.7080 1.1611 3.4844 31 1 2.2491 -1.6317 -1.1525 32 1 6.0350 0.2850 -4.4200 33 1 7.5674 1.9296 -3.4150 34 1 7.7660 2.0912 -0.9660 35 1 6.4260 0.6138 0.4780 36 1 4.8875 -1.0251 -0.5269 37 1 2.0862 0.9625 -4.9308 38 1 3.4326 -0.0949 -5.6167 39 1 2.0551 -2.1684 -5.1268 40 1 0.7080 -1.1122 -4.4406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609429765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:52 Heat of formation + Delta-G solvation = -49.967016 kcal Electronic energy + Delta-G solvation = -26189.504261 eV Core-core repulsion = 22483.736961 eV Total energy + Delta-G solvation = -3705.767301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.52205 -38.99043 -37.38512 -36.29217 -36.00789 -34.77019 -32.43646 -31.28188 -30.94976 -29.15188 -25.31973 -24.79450 -23.21191 -22.76530 -22.61238 -21.23466 -19.89694 -18.97075 -18.31335 -17.49413 -16.52570 -15.99739 -15.90546 -15.48411 -15.28129 -14.70533 -14.53957 -14.45987 -14.18316 -13.86851 -13.46771 -13.32752 -12.92813 -12.48831 -12.27310 -12.16594 -12.04617 -11.91146 -11.80876 -11.65986 -11.30206 -11.19558 -11.06490 -10.95976 -10.86368 -10.73170 -10.41757 -10.32772 -10.24866 -9.38417 -9.27448 -9.09378 -8.95693 -8.59443 -8.06280 -6.15559 -4.24567 -0.02111 0.89684 1.38123 2.49358 3.05649 3.22936 3.30348 3.33769 3.36547 3.49086 3.68764 3.90664 4.09506 4.33325 4.43581 4.58524 4.84646 4.92439 4.96213 5.04134 5.17244 5.28889 5.36704 5.48107 5.54166 5.63174 5.73752 5.88344 5.98672 6.13973 6.27814 6.43296 6.77259 6.89248 6.90618 7.09010 7.31753 7.48328 7.66313 7.84591 8.09105 8.52659 8.70305 8.94615 9.42680 10.90453 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.005675 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.322935 B = 4932.463839 C = 5964.198571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.267 3.733 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.067 0.933 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.704 5.704 13 C 0.556 3.444 14 O -0.532 6.532 15 C -0.671 4.671 16 S 2.533 3.467 17 O -0.922 6.922 18 O -0.934 6.934 19 C -0.656 4.656 20 C -0.023 4.023 21 C -0.147 4.147 22 C -0.065 4.065 23 C -0.134 4.134 24 C -0.004 4.004 25 C -0.096 4.096 26 C -0.105 4.105 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 -1.572 -12.743 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.166 3.834 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.085 0.915 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.354 5.354 13 C 0.336 3.664 14 O -0.410 6.410 15 C -0.763 4.763 16 S 2.712 3.288 17 O -0.919 6.919 18 O -0.932 6.932 19 C -0.745 4.745 20 C -0.042 4.042 21 C -0.165 4.165 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.023 4.023 25 C -0.134 4.134 26 C -0.144 4.144 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.091 -1.482 -12.756 15.178 hybrid contribution 0.328 0.047 1.300 1.342 sum 8.419 -1.435 -11.456 14.289 Atomic orbital electron populations 1.22095 0.98289 0.99368 1.01031 1.18828 0.91283 0.93790 0.79540 0.93242 1.21252 1.32626 1.13387 0.90027 0.91530 1.24863 0.94742 0.94910 0.98998 1.69902 1.35792 1.22516 1.23920 0.86475 0.78589 0.80150 0.82130 1.20528 1.21079 1.19576 1.46764 1.64486 1.14284 1.09885 1.18201 0.79820 0.86301 0.82035 1.90647 1.50047 1.17060 1.83230 1.32034 1.21777 1.21709 1.00780 1.04234 0.75065 0.74813 0.74641 1.93572 1.85519 1.55710 1.57090 1.93546 1.72889 1.81040 1.45694 1.30265 1.19045 1.20922 1.04242 1.20820 0.92448 0.91596 0.99330 1.21202 1.00348 0.99647 0.95353 1.21497 0.96375 0.96524 0.93905 1.21369 0.96959 0.96157 1.00823 1.21160 0.93803 0.94756 0.92561 1.22953 1.02700 0.98763 0.88947 1.22952 0.98212 0.99092 0.94130 0.95239 0.88954 0.96567 0.92566 0.76616 0.84687 0.85253 0.85371 0.84673 0.83248 0.85647 0.86228 0.86631 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.67 2.52 -69.08 -0.17 6.50 16 3 H 0.05 1.40 7.66 -51.93 -0.40 1.00 16 4 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 5 H 0.07 1.68 7.74 -52.49 -0.41 1.27 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.70 -14.91 4.96 -54.93 -0.27 -15.18 16 13 C 0.56 10.94 7.04 -10.98 -0.08 10.86 16 14 O -0.53 -12.19 15.99 5.55 0.09 -12.11 16 15 C -0.67 -10.02 2.47 -91.77 -0.23 -10.25 16 16 S 2.53 38.65 5.08 -107.50 -0.55 38.10 16 17 O -0.92 -16.12 15.37 -57.54 -0.88 -17.01 16 18 O -0.93 -14.35 16.87 -57.54 -0.97 -15.32 16 19 C -0.66 -10.22 5.45 -39.59 -0.22 -10.44 16 20 C -0.02 -0.31 9.47 -39.58 -0.37 -0.68 16 21 C -0.15 -1.75 10.05 -39.58 -0.40 -2.15 16 22 C -0.06 -0.80 10.05 -39.58 -0.40 -1.20 16 23 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 24 C 0.00 -0.06 9.48 -39.58 -0.38 -0.44 16 25 C -0.10 -1.12 9.68 -26.69 -0.26 -1.37 16 26 C -0.11 -1.19 10.00 -26.69 -0.27 -1.46 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.02 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.40 7.91 6.82 -40.82 -0.28 7.63 16 32 H 0.14 1.47 7.71 -52.49 -0.40 1.06 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.15 2.61 7.45 -52.49 -0.39 2.22 16 37 H 0.13 1.52 7.72 -51.93 -0.40 1.12 16 38 H 0.12 1.08 7.92 -51.93 -0.41 0.67 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -32.82 354.05 -9.95 -42.77 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.10 Total: 10.61 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -3.21 Total: -28.84 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.92 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.77 Total: -44.44 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 38.65 SS G_CDS: -0.55 Total: 38.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.82 -9.95 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609429765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.199 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds