Wall clock time and date at job start Tue Mar 31 2020 13:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46833 * 2 1 4 4 C 1.50703 * 109.47215 * 119.99710 * 2 1 3 5 5 H 1.07993 * 120.00238 * 120.00490 * 4 2 1 6 6 C 1.37883 * 119.99534 * 300.00039 * 4 2 1 7 7 N 1.31510 * 120.00145 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99627 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47084 * 90.00044 * 8 6 4 10 10 H 1.48504 * 109.46930 * 210.00294 * 8 6 4 11 11 H 1.48505 * 109.47072 * 329.99690 * 8 6 4 12 12 N 1.46496 * 109.47578 * 239.99684 * 2 1 3 13 13 C 1.34778 * 119.99785 * 84.72130 * 12 2 1 14 14 O 1.21286 * 120.00103 * 355.46020 * 13 12 2 15 15 C 1.50704 * 119.99746 * 175.46220 * 13 12 2 16 16 S 1.81391 * 115.54949 * 313.98394 * 15 13 12 17 17 O 1.42099 * 110.54503 * 55.46715 * 16 15 13 18 18 O 1.42106 * 110.54549 * 192.21072 * 16 15 13 19 19 C 1.76199 * 104.45237 * 303.84156 * 16 15 13 20 20 C 1.38232 * 119.99626 * 275.09042 * 19 16 15 21 21 C 1.38237 * 119.99934 * 179.78709 * 20 19 16 22 22 C 1.38237 * 119.99752 * 0.44069 * 21 20 19 23 23 C 1.38230 * 120.00089 * 359.81629 * 22 21 20 24 24 C 1.38227 * 120.00178 * 95.36607 * 19 16 15 25 25 C 1.53006 * 117.49648 * 168.31559 * 15 13 12 26 26 C 1.52998 * 117.49719 * 99.65732 * 15 13 12 27 27 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47386 * 300.00141 * 1 2 3 29 29 H 1.08996 * 109.46977 * 60.00620 * 1 2 3 30 30 H 0.97009 * 119.99810 * 179.97438 * 7 6 4 31 31 H 0.96991 * 120.00052 * 265.00420 * 12 2 1 32 32 H 1.07999 * 120.00564 * 359.97438 * 20 19 16 33 33 H 1.08004 * 120.00302 * 180.27374 * 21 20 19 34 34 H 1.08006 * 119.99755 * 179.83229 * 22 21 20 35 35 H 1.07995 * 120.00517 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.00152 * 359.97438 * 24 19 16 37 37 H 1.08998 * 117.49635 * 0.02562 * 25 15 13 38 38 H 1.09000 * 117.49449 * 145.02335 * 25 15 13 39 39 H 1.09005 * 117.50050 * 214.97361 * 26 15 13 40 40 H 1.09003 * 117.50023 * 359.97438 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3225 -1.1192 4.0081 9 1 3.6304 -0.5436 4.4119 10 1 1.3444 -0.9486 5.1124 11 1 2.4880 -2.5651 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 2.1419 -0.0197 -2.3584 14 8 1.7716 1.1327 -2.4357 15 6 2.7399 -0.7014 -3.5621 16 16 4.2616 -1.6395 -3.2543 17 8 4.0555 -2.6015 -2.2290 18 8 4.8832 -1.9979 -4.4808 19 6 5.3630 -0.4672 -2.5351 20 6 6.1190 0.3586 -3.3458 21 6 6.9799 1.2814 -2.7816 22 6 7.0914 1.3721 -1.4068 23 6 6.3393 0.5427 -0.5961 24 6 5.4752 -0.3771 -1.1603 25 6 2.6063 0.0047 -4.9129 26 6 1.7752 -1.2463 -4.6172 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.7080 1.1611 3.4844 31 1 2.2491 -1.6317 -1.1525 32 1 6.0350 0.2850 -4.4200 33 1 7.5674 1.9296 -3.4150 34 1 7.7660 2.0912 -0.9660 35 1 6.4260 0.6138 0.4780 36 1 4.8875 -1.0251 -0.5269 37 1 2.0862 0.9625 -4.9308 38 1 3.4326 -0.0949 -5.6167 39 1 2.0551 -2.1684 -5.1268 40 1 0.7080 -1.1122 -4.4406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609429765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:51 Heat of formation + Delta-G solvation = -72.507152 kcal Electronic energy + Delta-G solvation = -26190.481675 eV Core-core repulsion = 22483.736961 eV Total energy + Delta-G solvation = -3706.744714 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03914 -40.02896 -38.61374 -37.59502 -37.25186 -36.57422 -34.37012 -32.32906 -31.99414 -31.06231 -27.37098 -26.18188 -24.28120 -23.77393 -23.58533 -22.89032 -21.58009 -20.32917 -19.60969 -18.71827 -18.16328 -17.43932 -16.97642 -16.96788 -16.81864 -16.27447 -15.79690 -15.65601 -15.50723 -15.30916 -14.83931 -14.51044 -14.44453 -14.00837 -13.73934 -13.43290 -13.32375 -13.26528 -13.11799 -13.00320 -12.91959 -12.79456 -12.62578 -12.33634 -12.27409 -12.22738 -12.11549 -11.85806 -11.51764 -11.14518 -10.95044 -10.61904 -10.38935 -10.02810 -9.90112 -8.19893 -6.36298 -1.18930 -0.17611 0.31828 1.28019 1.41990 1.43605 1.54409 1.77985 2.09983 2.22009 2.39719 2.46041 2.76905 2.93894 3.10618 3.31753 3.60836 3.70927 3.85934 3.94463 4.09267 4.35225 4.37403 4.44583 4.47292 4.71347 4.71749 4.76204 4.88981 4.95164 4.99856 5.04911 5.07404 5.26988 5.36499 5.38337 5.53681 5.63195 5.83560 5.87706 6.05696 6.69102 6.77142 7.21295 7.38327 8.86381 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.005675 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.322935 B = 4932.463839 C = 5964.198571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.275 3.725 3 H 0.007 0.993 4 C -0.547 4.547 5 H 0.069 0.931 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 N -0.706 5.706 13 C 0.558 3.442 14 O -0.570 6.570 15 C -0.690 4.690 16 S 2.550 3.450 17 O -0.953 6.953 18 O -0.932 6.932 19 C -0.675 4.675 20 C -0.032 4.032 21 C -0.142 4.142 22 C -0.063 4.063 23 C -0.155 4.155 24 C -0.038 4.038 25 C -0.082 4.082 26 C -0.092 4.092 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.754 -1.846 -14.618 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.172 3.828 3 H 0.025 0.975 4 C -0.585 4.585 5 H 0.087 0.913 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.189 1.189 12 N -0.356 5.356 13 C 0.342 3.658 14 O -0.450 6.450 15 C -0.782 4.782 16 S 2.731 3.269 17 O -0.950 6.950 18 O -0.929 6.929 19 C -0.764 4.764 20 C -0.051 4.051 21 C -0.160 4.160 22 C -0.080 4.080 23 C -0.174 4.174 24 C -0.057 4.057 25 C -0.120 4.120 26 C -0.130 4.130 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.181 0.819 33 H 0.188 0.812 34 H 0.180 0.820 35 H 0.156 0.844 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.569 -1.791 -14.652 17.592 hybrid contribution -0.102 0.214 1.810 1.825 sum 9.467 -1.576 -12.842 16.032 Atomic orbital electron populations 1.21930 0.98092 0.99568 0.99983 1.18419 0.91333 0.91912 0.81134 0.97489 1.21499 1.32738 1.13532 0.90767 0.91295 1.25666 0.94767 0.95488 1.01862 1.70028 1.36728 1.23759 1.24646 0.85478 0.78141 0.79212 0.78412 1.19902 1.20653 1.18916 1.46558 1.64882 1.14490 1.09711 1.18746 0.78642 0.85800 0.82631 1.90620 1.51641 1.18693 1.84058 1.31805 1.22595 1.23963 0.99812 1.03641 0.74845 0.74390 0.74068 1.93527 1.85960 1.57337 1.58163 1.93535 1.72820 1.81193 1.45359 1.30308 1.20055 1.21996 1.04015 1.21304 0.92007 0.91165 1.00619 1.21740 0.99555 0.99122 0.95622 1.21930 0.95795 0.96039 0.94271 1.21592 0.97550 0.96676 1.01585 1.21106 0.95300 0.96055 0.93273 1.23260 1.03542 0.98692 0.86518 1.23357 0.97971 1.00534 0.91138 0.94240 0.91057 0.96450 0.92434 0.75882 0.81949 0.81187 0.81958 0.84427 0.85759 0.86241 0.82860 0.83186 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.38 2.52 44.25 0.11 14.49 16 3 H 0.01 0.43 7.66 -2.39 -0.02 0.42 16 4 C -0.55 -29.45 8.73 25.60 0.22 -29.23 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -51.80 11.32 21.45 0.24 -51.56 16 8 Si 0.96 42.35 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.71 -31.00 4.96 -446.09 -2.21 -33.21 16 13 C 0.56 22.38 7.04 87.66 0.62 23.00 16 14 O -0.57 -26.86 15.99 -3.05 -0.05 -26.91 16 15 C -0.69 -19.82 2.47 -11.54 -0.03 -19.85 16 16 S 2.55 75.76 5.08 -56.49 -0.29 75.47 16 17 O -0.95 -33.93 15.37 -127.65 -1.96 -35.89 16 18 O -0.93 -26.40 16.87 -127.65 -2.15 -28.56 16 19 C -0.67 -20.84 5.45 22.27 0.12 -20.72 16 20 C -0.03 -0.79 9.47 22.27 0.21 -0.58 16 21 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 22 C -0.06 -1.42 10.05 22.27 0.22 -1.20 16 23 C -0.16 -4.61 10.05 22.27 0.22 -4.38 16 24 C -0.04 -1.32 9.48 22.27 0.21 -1.10 16 25 C -0.08 -1.69 9.68 30.62 0.30 -1.40 16 26 C -0.09 -1.83 10.00 30.62 0.31 -1.53 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 28 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 29 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 31 H 0.40 16.68 6.82 -92.71 -0.63 16.05 16 32 H 0.16 2.95 7.71 -2.91 -0.02 2.93 16 33 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.12 4.74 7.45 -2.91 -0.02 4.72 16 37 H 0.12 2.67 7.72 -2.39 -0.02 2.65 16 38 H 0.15 2.11 7.92 -2.39 -0.02 2.09 16 39 H 0.15 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.12 2.42 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -73.87 354.05 -0.11 -73.97 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.43 Total: 32.17 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 3.86 Total: -49.87 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.97 Total: -84.76 kcal Atomic # 8 Polarization: -87.19 SS G_CDS: -4.16 Total: -91.36 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 75.76 SS G_CDS: -0.29 Total: 75.47 kcal Total: -73.87 -0.11 -73.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609429765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.464 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds