Wall clock time and date at job start Tue Mar 31 2020 13:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 S 1.81402 * 109.47414 * 295.00331 * 4 2 1 6 6 C 1.76195 * 103.00357 * 179.97438 * 5 4 2 7 7 C 1.38976 * 120.07725 * 359.72580 * 6 5 4 8 8 C 1.38092 * 119.91764 * 179.76678 * 7 6 5 9 9 C 1.38302 * 120.07691 * 0.48305 * 8 7 6 10 10 C 1.38300 * 120.16375 * 359.77282 * 9 8 7 11 11 C 1.38087 * 120.07992 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 C 1.50692 * 109.47295 * 180.02562 * 15 14 12 17 17 O 1.21297 * 119.99723 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00349 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00175 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00178 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99879 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00231 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99898 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47262 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47021 * 119.99832 * 23 21 19 26 26 H 1.48498 * 109.46965 * 239.99706 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 31 31 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 32 32 H 1.07999 * 120.04074 * 359.97438 * 7 6 5 33 33 H 1.07995 * 119.95802 * 180.23545 * 8 7 6 34 34 H 1.07994 * 119.91919 * 179.74447 * 9 8 7 35 35 H 1.08004 * 119.96178 * 179.97438 * 10 9 8 36 36 H 1.08004 * 120.04215 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47093 * 300.00565 * 15 14 12 38 38 H 1.09002 * 109.46827 * 59.99933 * 15 14 12 39 39 H 0.97004 * 119.99588 * 359.97438 * 18 16 15 40 40 H 0.96997 * 120.00295 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5601 0.2157 2.7267 6 6 2.2222 -0.7518 4.0420 7 6 2.9099 -1.9271 3.7643 8 6 3.4316 -2.6803 4.7975 9 6 3.2618 -2.2715 6.1078 10 6 2.5734 -1.1052 6.3881 11 6 2.0534 -0.3442 5.3598 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 6 1.7638 -0.3286 -4.8639 17 8 1.0643 0.6612 -4.8160 18 7 2.1260 -0.8407 -6.0568 19 6 1.7043 -0.2426 -7.2161 20 1 1.0822 0.6392 -7.1735 21 6 2.0782 -0.7702 -8.4459 22 7 2.8365 -1.8423 -8.4979 23 14 1.5042 0.0452 -10.0255 24 1 0.6692 1.2283 -9.6968 25 1 2.6844 0.4773 -10.8167 26 1 0.7034 -0.9215 -10.8189 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 3.0390 -2.2493 2.7416 33 1 3.9694 -3.5918 4.5823 34 1 3.6673 -2.8646 6.9140 35 1 2.4423 -0.7892 7.4125 36 1 1.5156 0.5663 5.5795 37 1 3.3173 -0.9846 -3.5564 38 1 1.8644 -2.0128 -3.5568 39 1 2.6857 -1.6320 -6.0951 40 1 3.0978 -2.2104 -9.3564 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732395140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:20 Heat of formation + Delta-G solvation = -105.533881 kcal Electronic energy + Delta-G solvation = -23165.430742 eV Core-core repulsion = 19457.253881 eV Total energy + Delta-G solvation = -3708.176861 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55544 -39.24181 -38.24037 -36.37703 -34.99246 -34.02686 -31.51364 -31.40405 -31.28902 -28.62911 -27.61851 -25.01445 -23.96491 -23.07823 -22.76145 -20.30655 -19.61869 -18.14133 -18.05000 -17.88297 -16.67038 -16.51995 -16.33850 -15.69074 -15.36108 -15.15536 -14.84831 -14.61869 -14.15298 -13.93545 -13.87723 -13.65527 -13.46663 -13.16706 -13.04474 -12.58113 -12.33075 -11.99613 -11.80664 -11.72969 -11.64430 -11.55307 -11.42996 -11.17048 -10.53402 -10.47830 -10.40735 -10.38788 -10.29818 -10.09465 -9.63971 -9.35372 -8.55310 -8.10809 -7.71685 -6.52333 -3.94399 0.84697 1.00089 1.05050 2.02318 2.19362 2.71171 3.10172 3.22624 3.30144 3.35170 3.70755 4.08931 4.15639 4.43403 4.48786 4.55779 4.57563 4.73818 4.88953 5.02554 5.03655 5.12172 5.14085 5.16142 5.29547 5.37266 5.47035 5.59819 5.61334 5.64734 5.68972 5.89937 6.00381 6.01264 6.04612 6.13617 6.52911 6.54429 7.45914 7.74192 7.92758 8.45784 9.04864 9.36729 9.86399 10.64920 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.040889 B = 0.001876 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.608601 B =14922.982903 C =15497.341620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 H 0.121 0.879 4 C -0.097 4.097 5 S -0.100 6.100 6 C -0.084 4.084 7 C -0.133 4.133 8 C -0.100 4.100 9 C -0.127 4.127 10 C -0.103 4.103 11 C -0.102 4.102 12 C 0.468 3.532 13 O -0.514 6.514 14 O -0.320 6.320 15 C 0.060 3.940 16 C 0.438 3.562 17 O -0.575 6.575 18 N -0.552 5.552 19 C -0.302 4.302 20 H 0.107 0.893 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.934 3.066 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.395 0.605 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -1.116 26.713 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 H 0.138 0.862 4 C -0.245 4.245 5 S 0.145 5.855 6 C -0.197 4.197 7 C -0.157 4.157 8 C -0.120 4.120 9 C -0.148 4.148 10 C -0.123 4.123 11 C -0.125 4.125 12 C 0.309 3.691 13 O -0.403 6.403 14 O -0.234 6.234 15 C -0.018 4.018 16 C 0.223 3.777 17 O -0.459 6.459 18 N -0.190 5.190 19 C -0.431 4.431 20 H 0.125 0.875 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.228 0.772 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.563 0.230 26.485 26.492 hybrid contribution 1.103 -1.635 -0.935 2.183 sum 0.540 -1.405 25.550 25.595 Atomic orbital electron populations 1.21896 0.90778 1.03649 1.04447 1.20655 0.99281 1.00991 0.87662 0.86162 1.23588 1.05552 1.02051 0.93297 1.85401 1.70055 1.33450 0.96555 1.21820 1.02206 0.98491 0.97160 1.21295 0.99543 0.94682 1.00160 1.21106 0.98801 0.99446 0.92598 1.21204 0.99824 0.97095 0.96682 1.21098 0.97464 0.94840 0.98885 1.20770 1.00882 1.00375 0.90506 1.23402 0.77486 0.82835 0.85379 1.90655 1.36008 1.26051 1.87562 1.86542 1.68521 1.54475 1.13824 1.22786 0.99587 0.95650 0.83735 1.19301 0.86874 0.87680 0.83890 1.90567 1.41347 1.27424 1.86588 1.41712 1.45712 1.27612 1.03937 1.19783 1.29826 1.11411 0.82118 0.87521 1.25321 0.96541 0.96227 0.99694 1.69618 1.35538 1.21474 1.27108 0.85737 0.78485 0.79162 0.80593 1.19067 1.20613 1.20608 0.91695 0.89864 0.90262 0.88274 0.88141 0.85522 0.85633 0.85825 0.85528 0.85449 0.89496 0.89493 0.77170 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.95 37.16 0.33 -1.19 16 2 C -0.07 -0.72 2.83 -91.78 -0.26 -0.98 16 3 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.10 -0.96 3.12 37.16 0.12 -0.84 16 5 S -0.10 -0.94 20.73 -107.50 -2.23 -3.17 16 6 C -0.08 -0.81 6.11 -39.04 -0.24 -1.05 16 7 C -0.13 -1.24 9.36 -39.36 -0.37 -1.61 16 8 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 9 C -0.13 -0.91 10.04 -39.53 -0.40 -1.31 16 10 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 11 C -0.10 -0.86 9.79 -39.37 -0.39 -1.25 16 12 C 0.47 6.98 7.26 36.00 0.26 7.24 16 13 O -0.51 -8.44 15.67 -18.75 -0.29 -8.73 16 14 O -0.32 -5.74 9.66 -45.91 -0.44 -6.19 16 15 C 0.06 1.12 5.94 36.00 0.21 1.33 16 16 C 0.44 10.43 7.86 -10.99 -0.09 10.35 16 17 O -0.58 -15.81 16.08 -14.12 -0.23 -16.04 16 18 N -0.55 -13.85 5.29 -10.97 -0.06 -13.91 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 20 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 23 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 29 H 0.08 0.69 7.14 -51.93 -0.37 0.32 16 30 H 0.10 0.98 7.73 -51.92 -0.40 0.58 16 31 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 32 H 0.13 1.14 5.88 -52.49 -0.31 0.83 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 38 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 39 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -32.07 362.47 -9.05 -41.11 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.11 Total: 8.63 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.85 Total: 0.47 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.67 Total: -37.10 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.96 Total: -30.96 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.23 Total: -3.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.07 -9.05 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732395140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.419 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds