Wall clock time and date at job start Tue Mar 31 2020 14:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81399 * 109.46810 * 2 1 4 4 C 1.76197 * 103.00045 * 179.97438 * 3 2 1 5 5 C 1.38970 * 120.08093 * 359.72367 * 4 3 2 6 6 C 1.38088 * 119.91935 * 179.71945 * 5 4 3 7 7 C 1.38303 * 120.08005 * 0.53476 * 6 5 4 8 8 C 1.50692 * 119.91824 * 179.74189 * 7 6 5 9 9 C 1.50708 * 109.47056 * 270.01983 * 8 7 6 10 10 O 1.20821 * 119.99771 * 0.02562 * 9 8 7 11 11 O 1.34229 * 119.99825 * 180.02562 * 9 8 7 12 12 C 1.45202 * 116.99895 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47189 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99747 * 359.97438 * 13 12 11 15 15 N 1.34766 * 119.99906 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99840 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99910 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00063 * 180.02562 * 16 15 13 19 19 N 1.31422 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00196 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47317 * 119.99291 * 20 18 16 23 23 H 1.48501 * 109.47393 * 239.99546 * 20 18 16 24 24 C 1.38297 * 120.15869 * 359.76416 * 7 6 5 25 25 C 1.38086 * 120.08428 * 359.95491 * 24 7 6 26 26 H 1.09001 * 109.47362 * 60.00691 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47486 * 240.00031 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99308 * 2 1 3 31 31 H 1.08006 * 120.03943 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.95854 * 180.27271 * 6 5 4 33 33 H 1.08997 * 109.47381 * 30.01766 * 8 7 6 34 34 H 1.08995 * 109.46991 * 150.02606 * 8 7 6 35 35 H 1.08999 * 109.47116 * 299.99928 * 12 11 9 36 36 H 1.09001 * 109.47338 * 60.00130 * 12 11 9 37 37 H 0.96998 * 120.00610 * 0.02562 * 15 13 12 38 38 H 0.96998 * 119.99673 * 180.02562 * 19 18 16 39 39 H 1.08001 * 119.96319 * 179.97438 * 24 7 6 40 40 H 1.07997 * 120.04197 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8853 1.5118 0.0008 5 6 4.4420 0.2385 0.0070 6 6 5.8145 0.0868 0.0017 7 6 6.6350 1.2001 0.0014 8 6 8.1323 1.0303 0.0015 9 6 8.6313 0.9737 1.4225 10 8 7.8510 1.0616 2.3407 11 8 9.9426 0.8255 1.6678 12 6 10.3515 0.7784 3.0603 13 6 11.8469 0.6089 3.1393 14 8 12.5034 0.5346 2.1221 15 7 12.4547 0.5400 4.3401 16 6 13.8152 0.3863 4.4120 17 1 14.3998 0.3209 3.5063 18 6 14.4419 0.3146 5.6501 19 7 13.7305 0.3947 6.7522 20 14 16.2955 0.1060 5.7480 21 1 16.8598 0.0431 4.3758 22 1 16.8859 1.2591 6.4740 23 1 16.6147 -1.1507 6.4720 24 6 6.0845 2.4689 0.0015 25 6 4.7129 2.6283 0.0009 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8019 -0.6314 0.0118 32 1 6.2478 -0.9025 0.0021 33 1 8.3931 0.1051 -0.5123 34 1 8.5936 1.8738 -0.5121 35 1 10.0640 1.7062 3.5549 36 1 9.8644 -0.0625 3.5538 37 1 11.9298 0.5990 5.1536 38 1 14.1680 0.3450 7.6165 39 1 6.7282 3.3361 0.0017 40 1 4.2838 3.6194 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751916831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:53 Heat of formation + Delta-G solvation = -106.493831 kcal Electronic energy + Delta-G solvation = -23048.710653 eV Core-core repulsion = 19340.492165 eV Total energy + Delta-G solvation = -3708.218487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50369 -39.25641 -38.09338 -36.09275 -34.00460 -33.54587 -33.17173 -31.38526 -31.21375 -29.09956 -27.60339 -24.65992 -24.37466 -22.69202 -22.44486 -20.58972 -19.57765 -18.07974 -17.87586 -17.55631 -16.61625 -16.53587 -16.03791 -15.51618 -15.45253 -15.34185 -15.21000 -14.52273 -14.21496 -14.10661 -13.91606 -13.76538 -13.25237 -12.85185 -12.81011 -12.66512 -12.51394 -12.04416 -12.00811 -11.92743 -11.63047 -11.51242 -11.31697 -11.15578 -10.52883 -10.45681 -10.40439 -10.39495 -10.30226 -9.84748 -9.62178 -9.22104 -8.52601 -8.08823 -7.68373 -6.50579 -3.92657 0.85905 1.13702 1.15160 2.05532 2.32853 2.72772 3.11355 3.23462 3.30810 3.49912 3.73369 4.12147 4.37576 4.38704 4.43594 4.49049 4.64814 4.72836 4.86123 4.96739 5.08685 5.13644 5.14639 5.20372 5.25663 5.29484 5.34422 5.49367 5.55273 5.58470 5.69791 5.74723 5.96925 6.01374 6.06052 6.30134 6.59089 6.67778 7.47481 7.85870 7.96979 8.48022 9.06668 9.38985 9.88808 10.66714 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.035426 B = 0.001795 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.186099 B =15595.034096 C =15906.231924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 S -0.124 6.124 4 C -0.082 4.082 5 C -0.132 4.132 6 C -0.082 4.082 7 C -0.076 4.076 8 C -0.073 4.073 9 C 0.457 3.543 10 O -0.506 6.506 11 O -0.326 6.326 12 C 0.061 3.939 13 C 0.438 3.562 14 O -0.576 6.576 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.107 0.893 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.082 4.082 25 C -0.099 4.099 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.273 0.727 39 H 0.130 0.870 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.076 0.501 -13.332 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.260 4.260 3 S 0.119 5.881 4 C -0.194 4.194 5 C -0.156 4.156 6 C -0.101 4.101 7 C -0.078 4.078 8 C -0.111 4.111 9 C 0.299 3.701 10 O -0.394 6.394 11 O -0.241 6.241 12 C -0.016 4.016 13 C 0.223 3.777 14 O -0.460 6.460 15 N -0.190 5.190 16 C -0.431 4.431 17 H 0.125 0.875 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.102 4.102 25 C -0.122 4.122 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.147 0.853 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.567 1.428 -13.514 28.075 hybrid contribution 1.339 -1.227 0.968 2.058 sum -23.228 0.201 -12.546 26.400 Atomic orbital electron populations 1.21521 0.91727 1.03028 1.03341 1.23611 1.00530 0.96093 1.05728 1.85497 0.98055 1.11892 1.92652 1.21697 0.96575 0.96487 1.04657 1.21073 0.95603 0.95473 1.03419 1.20916 0.92832 0.98455 0.97947 1.19337 0.93496 0.93699 1.01303 1.20279 0.92197 1.06989 0.91598 1.23573 0.80940 0.73104 0.92441 1.90681 1.56754 1.45355 1.46658 1.86546 1.25125 1.82272 1.30167 1.22737 0.96175 1.03364 0.79368 1.19334 0.87278 0.85942 0.85138 1.90559 1.65635 1.55380 1.34453 1.41716 1.08374 1.63124 1.05825 1.19785 0.81754 1.47237 0.94370 0.87540 1.25321 1.00894 0.96955 0.94633 1.69628 1.36618 1.49578 0.97938 0.85735 0.81702 0.77846 0.78677 1.19082 1.20619 1.20634 1.20966 0.94513 0.96793 0.97936 1.20698 0.92816 0.97390 1.01318 0.91525 0.90672 0.91473 0.89358 0.89287 0.85862 0.85521 0.86511 0.86438 0.89579 0.89618 0.77164 0.91680 0.85254 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.92 37.16 0.37 -0.28 16 2 C -0.11 -0.69 5.05 37.16 0.19 -0.51 16 3 S -0.12 -1.10 21.92 -107.50 -2.36 -3.46 16 4 C -0.08 -0.85 6.11 -39.04 -0.24 -1.09 16 5 C -0.13 -1.31 9.36 -39.37 -0.37 -1.68 16 6 C -0.08 -0.85 9.69 -39.61 -0.38 -1.23 16 7 C -0.08 -0.83 4.38 -104.58 -0.46 -1.29 16 8 C -0.07 -0.78 5.94 -29.04 -0.17 -0.95 16 9 C 0.46 6.98 7.95 36.01 0.29 7.26 16 10 O -0.51 -8.87 15.78 -18.75 -0.30 -9.17 16 11 O -0.33 -5.97 9.76 -45.90 -0.45 -6.42 16 12 C 0.06 1.17 5.94 36.01 0.21 1.38 16 13 C 0.44 10.59 7.86 -10.99 -0.09 10.50 16 14 O -0.58 -16.00 16.08 -14.11 -0.23 -16.23 16 15 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 18 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 19 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 20 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.08 -0.86 9.69 -39.62 -0.38 -1.25 16 25 C -0.10 -1.03 9.79 -39.36 -0.39 -1.41 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.49 7.76 -51.92 -0.40 0.08 16 30 H 0.09 0.54 7.73 -51.92 -0.40 0.14 16 31 H 0.12 0.97 5.88 -52.48 -0.31 0.66 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.12 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 36 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -33.55 365.40 -9.01 -42.56 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.17 Total: 7.50 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.66 Total: 1.51 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.45 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.97 Total: -31.82 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.36 Total: -3.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.55 -9.01 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751916831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.937 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds