Wall clock time and date at job start Tue Mar 31 2020 14:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99836 * 2 1 4 4 O 1.21284 * 120.00371 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00075 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47133 * 305.00606 * 5 3 2 7 7 C 1.53002 * 109.46770 * 64.99963 * 5 3 2 8 8 C 1.50704 * 109.47057 * 185.00224 * 7 5 3 9 9 C 1.38238 * 119.99789 * 269.72741 * 8 7 5 10 10 C 1.38239 * 119.99608 * 179.76560 * 9 8 7 11 11 C 1.38231 * 119.99774 * 0.50790 * 10 9 8 12 12 C 1.38234 * 120.00553 * 359.74304 * 11 10 9 13 13 C 1.38231 * 119.99732 * 90.00093 * 8 7 5 14 14 O 1.45198 * 109.47348 * 184.99988 * 5 3 2 15 15 C 1.34221 * 116.99903 * 90.00141 * 14 5 3 16 16 O 1.20826 * 120.00367 * 359.97438 * 15 14 5 17 17 C 1.50706 * 120.00092 * 180.02562 * 15 14 5 18 18 S 1.81002 * 109.47200 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99946 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99679 * 359.97438 * 21 19 18 24 24 H 1.48490 * 109.47080 * 90.00385 * 23 21 19 25 25 H 1.48506 * 109.46635 * 210.00589 * 23 21 19 26 26 H 1.48499 * 109.47138 * 329.99770 * 23 21 19 27 27 H 1.08998 * 109.46964 * 59.99979 * 1 2 3 28 28 H 1.08999 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46875 * 300.00247 * 1 2 3 30 30 H 0.96995 * 119.99589 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.47352 * 304.99922 * 7 5 3 32 32 H 1.09004 * 109.47362 * 64.99866 * 7 5 3 33 33 H 1.07997 * 119.99939 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.99585 * 180.22986 * 10 9 8 35 35 H 1.08007 * 119.99682 * 179.72554 * 11 10 9 36 36 H 1.07994 * 120.00434 * 179.97438 * 12 11 10 37 37 H 1.07996 * 120.00444 * 359.97438 * 13 8 7 38 38 H 1.09001 * 109.46953 * 299.99668 * 17 15 14 39 39 H 1.09000 * 109.47318 * 59.99266 * 17 15 14 40 40 H 0.97001 * 119.99197 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0090 0.5779 0.8426 7 6 4.1564 0.5573 -1.3065 8 6 5.6583 0.4443 -1.2552 9 6 6.4457 1.4857 -1.7096 10 6 7.8233 1.3840 -1.6581 11 6 8.4135 0.2367 -1.1619 12 6 7.6262 -0.8067 -0.7123 13 6 6.2485 -0.7030 -0.7590 14 8 4.1299 2.5310 0.1198 15 6 4.3325 2.9993 1.3612 16 8 4.1124 2.2934 2.3167 17 6 4.8336 4.4062 1.5634 18 16 5.0034 4.7375 3.3347 19 6 5.5872 6.3991 3.2806 20 1 5.7320 6.8899 2.3294 21 6 5.8619 7.0770 4.4602 22 7 6.2975 8.3184 4.4198 23 14 5.6121 6.2278 6.1052 24 1 6.8657 5.5374 6.5012 25 1 5.2566 7.2376 7.1345 26 1 4.5152 5.2337 5.9876 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.7218 -0.4335 -1.4392 32 1 3.8683 1.1953 -2.1421 33 1 5.9845 2.3801 -2.1018 34 1 8.4385 2.1991 -2.0097 35 1 9.4899 0.1555 -1.1258 36 1 8.0873 -1.7032 -0.3251 37 1 5.6334 -1.5181 -0.4077 38 1 5.8027 4.5201 1.0775 39 1 4.1243 5.1105 1.1287 40 1 6.4892 8.7922 5.2442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785156388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:36 Heat of formation + Delta-G solvation = -98.967702 kcal Electronic energy + Delta-G solvation = -24512.115791 eV Core-core repulsion = 20804.223661 eV Total energy + Delta-G solvation = -3707.892130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86957 -39.31419 -39.20942 -36.33825 -34.92522 -33.70580 -32.46046 -31.02759 -30.41129 -29.29561 -26.96875 -25.65962 -24.51096 -22.75332 -21.60618 -21.37143 -20.43760 -18.13802 -18.03835 -17.39776 -16.97890 -16.24556 -15.71627 -15.47873 -15.39085 -15.22712 -15.11115 -14.94767 -14.12909 -14.05499 -13.64222 -13.53188 -13.14490 -13.00687 -12.86126 -12.76894 -12.63900 -12.53995 -12.37516 -11.61551 -11.33673 -11.28944 -11.25362 -11.13059 -11.02663 -10.70657 -10.19408 -9.86956 -9.84096 -9.42840 -9.04620 -9.02500 -8.87850 -8.57931 -6.98024 -6.30476 -4.03987 1.14863 1.27595 2.27641 2.35922 2.53620 2.90276 3.16868 3.31170 3.48144 3.54207 3.62129 4.24530 4.30812 4.51590 4.56617 4.68653 4.73936 4.84111 4.86845 4.95358 4.95886 5.04111 5.08440 5.24306 5.32016 5.33759 5.44206 5.53689 5.54305 5.71034 5.84125 5.90801 6.00832 6.06092 6.30007 6.38829 6.42539 6.51202 6.85573 7.10786 7.90067 7.92668 8.05447 8.41474 9.14790 10.78675 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.003933 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.675386 B = 7118.427110 C = 8952.531193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.500 3.500 4 O -0.513 6.513 5 C 0.078 3.922 6 H 0.112 0.888 7 C -0.069 4.069 8 C -0.091 4.091 9 C -0.098 4.098 10 C -0.118 4.118 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.116 4.116 14 O -0.324 6.324 15 C 0.484 3.516 16 O -0.490 6.490 17 C -0.097 4.097 18 S -0.139 6.139 19 C -0.521 4.521 20 H 0.092 0.908 21 C 0.098 3.902 22 N -0.878 5.878 23 Si 0.855 3.145 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.236 1.236 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.402 0.598 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 -22.490 -14.667 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.285 3.715 4 O -0.387 6.387 5 C 0.018 3.982 6 H 0.130 0.870 7 C -0.106 4.106 8 C -0.091 4.091 9 C -0.116 4.116 10 C -0.136 4.136 11 C -0.137 4.137 12 C -0.139 4.139 13 C -0.134 4.134 14 O -0.241 6.241 15 C 0.325 3.675 16 O -0.376 6.376 17 C -0.244 4.244 18 S 0.087 5.913 19 C -0.668 4.668 20 H 0.110 0.890 21 C -0.111 4.111 22 N -0.514 5.514 23 Si 0.680 3.320 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.160 1.160 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.900 -22.425 -13.395 26.411 hybrid contribution 0.433 0.218 -0.127 0.501 sum -3.467 -22.207 -13.522 26.230 Atomic orbital electron populations 1.21564 0.79087 1.02295 1.02668 1.45715 1.07985 1.08344 1.76699 1.20902 0.90017 0.84247 0.76372 1.90774 1.69719 1.31064 1.47162 1.22462 0.90481 0.84136 1.01126 0.87042 1.20651 0.92676 1.01489 0.95815 1.19622 0.94337 0.94849 1.00277 1.21147 0.93664 0.98111 0.98720 1.21218 0.94928 0.97904 0.99530 1.21202 0.99948 0.93841 0.98701 1.21110 0.93733 0.99031 1.00071 1.21017 0.95104 0.97429 0.99884 1.86643 1.76367 1.28959 1.32107 1.23333 0.73833 0.89820 0.80507 1.90641 1.47256 1.58302 1.41361 1.22986 1.05247 0.91379 1.04825 1.84773 1.87699 1.19338 0.99446 1.22269 1.50978 0.95709 0.97893 0.89032 1.24678 0.93238 0.94234 0.98952 1.69935 1.42749 1.09899 1.28799 0.86762 0.80996 0.80744 0.83516 1.19131 1.19779 1.15970 0.92046 0.90472 0.91981 0.76476 0.88587 0.88884 0.85499 0.85802 0.86099 0.86080 0.86123 0.87188 0.86954 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.85 0.64 1.32 16 2 N -0.73 -6.49 5.61 -67.07 -0.38 -6.87 16 3 C 0.50 6.74 7.15 -10.98 -0.08 6.66 16 4 O -0.51 -9.39 16.51 -14.05 -0.23 -9.62 16 5 C 0.08 0.98 2.34 -27.88 -0.07 0.91 16 6 H 0.11 1.41 7.16 -51.93 -0.37 1.04 16 7 C -0.07 -0.61 5.04 -27.88 -0.14 -0.75 16 8 C -0.09 -0.91 4.97 -104.62 -0.52 -1.43 16 9 C -0.10 -1.08 9.41 -39.58 -0.37 -1.45 16 10 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 11 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 12 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 13 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 14 O -0.32 -5.29 8.93 -45.86 -0.41 -5.70 16 15 C 0.48 9.48 7.94 36.01 0.29 9.77 16 16 O -0.49 -10.64 15.08 -18.75 -0.28 -10.92 16 17 C -0.10 -2.01 6.27 36.01 0.23 -1.79 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 20 H 0.09 2.77 8.03 -52.48 -0.42 2.35 16 21 C 0.10 2.87 5.50 -17.43 -0.10 2.78 16 22 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 23 Si 0.86 21.78 27.74 -169.99 -4.71 17.06 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.40 2.08 8.53 -40.82 -0.35 1.73 16 31 H 0.10 0.52 7.71 -51.93 -0.40 0.12 16 32 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16 39 H 0.11 2.27 8.14 -51.92 -0.42 1.84 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -37.04 365.37 -8.46 -45.50 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.35 Total: 1.33 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.39 Total: -4.95 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.40 Total: -32.64 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.92 Total: -26.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.04 -8.46 -45.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785156388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.468 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds