Wall clock time and date at job start Tue Mar 31 2020 14:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99665 * 2 1 4 4 O 1.21283 * 119.99990 * 359.71991 * 3 2 1 5 5 C 1.50698 * 119.99538 * 179.72653 * 3 2 1 6 6 H 1.08993 * 109.47916 * 59.99687 * 5 3 2 7 7 C 1.53001 * 109.47207 * 299.99218 * 5 3 2 8 8 C 1.50697 * 109.47395 * 175.00231 * 7 5 3 9 9 C 1.38241 * 120.00186 * 269.73259 * 8 7 5 10 10 C 1.38228 * 119.99952 * 179.76694 * 9 8 7 11 11 C 1.38234 * 119.99964 * 0.49939 * 10 9 8 12 12 C 1.38235 * 120.00211 * 359.75549 * 11 10 9 13 13 C 1.38234 * 119.99865 * 89.99891 * 8 7 5 14 14 O 1.45209 * 109.46951 * 179.97438 * 5 3 2 15 15 C 1.34226 * 116.99585 * 269.99648 * 14 5 3 16 16 O 1.20823 * 120.00301 * 359.97438 * 15 14 5 17 17 C 1.50699 * 119.99805 * 179.97438 * 15 14 5 18 18 S 1.80998 * 109.47352 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00197 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00214 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00145 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99971 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47134 * 90.00217 * 23 21 19 25 25 H 1.48506 * 109.47154 * 210.00080 * 23 21 19 26 26 H 1.48494 * 109.47336 * 330.00214 * 23 21 19 27 27 H 1.08998 * 109.47377 * 180.28122 * 1 2 3 28 28 H 1.09009 * 109.47454 * 300.27637 * 1 2 3 29 29 H 1.08998 * 109.47492 * 60.27932 * 1 2 3 30 30 H 0.97001 * 119.99790 * 179.71713 * 2 1 3 31 31 H 1.09000 * 109.47470 * 295.00600 * 7 5 3 32 32 H 1.09009 * 109.47021 * 55.00399 * 7 5 3 33 33 H 1.08002 * 119.99838 * 359.97438 * 9 8 7 34 34 H 1.08004 * 119.99869 * 180.23183 * 10 9 8 35 35 H 1.08008 * 120.00050 * 179.72798 * 11 10 9 36 36 H 1.08001 * 119.99631 * 179.97438 * 12 11 10 37 37 H 1.07992 * 120.00007 * 0.02562 * 13 8 7 38 38 H 1.08996 * 109.47331 * 300.00386 * 17 15 14 39 39 H 1.09007 * 109.46748 * 60.00116 * 17 15 14 40 40 H 0.97001 * 120.00416 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 -0.0051 5 6 3.6458 1.1672 0.0062 6 1 4.0129 0.6513 -0.8809 7 6 4.1506 0.4491 1.2594 8 6 5.6527 0.3408 1.2056 9 6 6.2457 -0.7631 0.6219 10 6 7.6235 -0.8601 0.5683 11 6 8.4085 0.1419 1.1075 12 6 7.8156 1.2433 1.6959 13 6 6.4377 1.3428 1.7448 14 8 4.1298 2.5363 0.0044 15 6 4.3379 3.1073 -1.1924 16 8 4.1232 2.4838 -2.2049 17 6 4.8393 4.5261 -1.2733 18 16 5.0185 5.0047 -3.0096 19 6 5.6012 6.6559 -2.8134 20 1 5.7407 7.0653 -1.8238 21 6 5.8809 7.4305 -3.9306 22 7 6.3167 8.6640 -3.7840 23 14 5.6403 6.7222 -5.6423 24 1 4.2564 7.0007 -6.1032 25 1 6.6090 7.3483 -6.5777 26 1 5.8643 5.2547 -5.6067 27 1 -0.3634 -1.0276 0.0050 28 1 -0.3634 0.5181 0.8875 29 1 -0.3634 0.5095 -0.8924 30 1 1.9500 -0.8401 0.0041 31 1 3.8585 1.0142 2.1445 32 1 3.7158 -0.5494 1.3060 33 1 5.6324 -1.5482 0.2048 34 1 8.0868 -1.7209 0.1089 35 1 9.4851 0.0640 1.0695 36 1 8.4289 2.0259 2.1175 37 1 5.9744 2.2030 2.2050 38 1 4.1278 5.1914 -0.7842 39 1 5.8062 4.5987 -0.7752 40 1 6.5118 9.2055 -4.5648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785156389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:39 Heat of formation + Delta-G solvation = -98.763380 kcal Electronic energy + Delta-G solvation = -24515.397381 eV Core-core repulsion = 20807.514111 eV Total energy + Delta-G solvation = -3707.883270 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86929 -39.31319 -39.20697 -36.33098 -34.94671 -33.69414 -32.45742 -31.02929 -30.41027 -29.29813 -26.94431 -25.65700 -24.53058 -22.75452 -21.60110 -21.38018 -20.43115 -18.14063 -18.03755 -17.39170 -16.98318 -16.25448 -15.68308 -15.47475 -15.39904 -15.23498 -15.11611 -14.94645 -14.12338 -14.05180 -13.63989 -13.53146 -13.15097 -13.01549 -12.85538 -12.76297 -12.65636 -12.53758 -12.36882 -11.60686 -11.33540 -11.29294 -11.24841 -11.13182 -11.02253 -10.70274 -10.18434 -9.87359 -9.83557 -9.43105 -9.04774 -9.02049 -8.87885 -8.57475 -6.97601 -6.30158 -4.03646 1.14710 1.27544 2.27131 2.37157 2.55005 2.90529 3.16913 3.32310 3.47984 3.54486 3.61763 4.23709 4.31107 4.50866 4.56274 4.68059 4.74091 4.84623 4.86737 4.95247 4.95652 5.03918 5.08728 5.24016 5.31992 5.33923 5.43655 5.53520 5.54149 5.71566 5.83948 5.90669 6.01106 6.05849 6.29922 6.38736 6.42430 6.52024 6.85457 7.10382 7.90313 7.92909 8.06256 8.41745 9.15100 10.78978 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.003926 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.963632 B = 7130.154041 C = 8966.467041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.500 3.500 4 O -0.513 6.513 5 C 0.077 3.923 6 H 0.113 0.887 7 C -0.069 4.069 8 C -0.091 4.091 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.098 4.098 14 O -0.325 6.325 15 C 0.484 3.516 16 O -0.490 6.490 17 C -0.096 4.096 18 S -0.139 6.139 19 C -0.521 4.521 20 H 0.092 0.908 21 C 0.098 3.902 22 N -0.878 5.878 23 Si 0.855 3.145 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.236 1.236 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -23.704 13.076 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.388 5.388 3 C 0.285 3.715 4 O -0.387 6.387 5 C 0.018 3.982 6 H 0.131 0.869 7 C -0.107 4.107 8 C -0.091 4.091 9 C -0.134 4.134 10 C -0.139 4.139 11 C -0.137 4.137 12 C -0.136 4.136 13 C -0.116 4.116 14 O -0.241 6.241 15 C 0.326 3.674 16 O -0.375 6.375 17 C -0.244 4.244 18 S 0.088 5.912 19 C -0.669 4.669 20 H 0.110 0.890 21 C -0.111 4.111 22 N -0.514 5.514 23 Si 0.680 3.320 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.160 1.160 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.793 -23.532 11.741 26.571 hybrid contribution 0.366 0.225 0.189 0.469 sum -3.428 -23.307 11.931 26.407 Atomic orbital electron populations 1.21562 0.79097 1.02280 1.02679 1.45721 1.07976 1.08326 1.76768 1.20900 0.90017 0.84246 0.76368 1.90778 1.69691 1.31073 1.47136 1.22463 0.90490 0.83505 1.01767 0.86940 1.20661 0.92727 1.00458 0.96812 1.19621 0.94341 0.95315 0.99830 1.21018 0.95093 0.97712 0.99614 1.21108 0.93747 0.99174 0.99912 1.21203 0.99950 0.94330 0.98202 1.21218 0.94912 0.98011 0.99443 1.21141 0.93683 0.98046 0.98763 1.86639 1.76366 1.27099 1.34040 1.23312 0.73798 0.89326 0.80990 1.90640 1.47327 1.63612 1.35926 1.22982 1.05228 0.90823 1.05395 1.84776 1.87500 1.18091 1.00873 1.22269 1.51154 0.95507 0.97920 0.89035 1.24676 0.93236 0.94047 0.99142 1.69932 1.42773 1.07577 1.31117 0.86760 0.79246 0.82038 0.83949 1.19113 1.19796 1.15996 0.90482 0.92037 0.91994 0.76490 0.88893 0.88623 0.86122 0.86080 0.86098 0.85803 0.85503 0.87008 0.87162 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.73 -6.42 5.57 -67.08 -0.37 -6.79 16 3 C 0.50 6.73 7.20 -10.99 -0.08 6.65 16 4 O -0.51 -9.43 16.47 -14.10 -0.23 -9.66 16 5 C 0.08 0.98 2.35 -27.88 -0.07 0.91 16 6 H 0.11 1.44 7.15 -51.93 -0.37 1.07 16 7 C -0.07 -0.60 5.01 -27.88 -0.14 -0.74 16 8 C -0.09 -0.91 4.97 -104.62 -0.52 -1.43 16 9 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 10 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 11 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 12 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 13 C -0.10 -1.07 9.40 -39.58 -0.37 -1.44 16 14 O -0.33 -5.30 8.93 -45.89 -0.41 -5.71 16 15 C 0.48 9.52 7.90 36.00 0.28 9.81 16 16 O -0.49 -10.69 15.08 -18.75 -0.28 -10.97 16 17 C -0.10 -2.01 6.27 36.00 0.23 -1.79 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 20 H 0.09 2.77 8.03 -52.49 -0.42 2.35 16 21 C 0.10 2.88 5.50 -17.43 -0.10 2.78 16 22 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 23 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.40 2.02 8.19 -40.82 -0.33 1.68 16 31 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.10 0.49 7.37 -51.92 -0.38 0.11 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.11 2.26 8.14 -51.92 -0.42 1.84 16 39 H 0.11 2.11 8.14 -51.91 -0.42 1.69 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -37.16 364.58 -8.44 -45.60 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.31 Total: 1.23 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.39 Total: -4.92 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.40 Total: -32.59 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.92 Total: -26.35 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.16 -8.44 -45.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785156389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.168 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds