Wall clock time and date at job start Tue Mar 31 2020 14:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47252 * 29.18746 * 3 2 1 5 5 C 1.36933 * 120.00170 * 273.36915 * 4 3 2 6 6 H 1.07996 * 120.00435 * 186.53941 * 5 4 3 7 7 C 1.38813 * 119.99454 * 6.54478 * 5 4 3 8 8 N 1.31624 * 120.00403 * 25.64087 * 7 5 4 9 9 Si 1.86807 * 119.99834 * 205.63299 * 7 5 4 10 10 H 1.48503 * 109.47066 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47017 * 120.00307 * 9 7 5 12 12 H 1.48498 * 109.47338 * 240.00286 * 9 7 5 13 13 S 1.65600 * 120.00017 * 93.37399 * 4 3 2 14 14 O 1.42093 * 104.27982 * 153.93012 * 13 4 3 15 15 O 1.42103 * 104.27613 * 26.06706 * 13 4 3 16 16 C 1.81402 * 104.44686 * 269.99987 * 13 4 3 17 17 C 1.53000 * 109.47043 * 179.97438 * 16 13 4 18 18 C 1.50698 * 109.47067 * 179.97438 * 17 16 13 19 19 C 1.38275 * 119.94346 * 269.72538 * 18 17 16 20 20 C 1.38140 * 120.05428 * 179.72514 * 19 18 17 21 21 C 1.38739 * 119.94582 * 0.57317 * 20 19 18 22 22 O 1.35894 * 120.05857 * 179.68048 * 21 20 19 23 23 C 1.42900 * 116.99913 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.88665 * 359.70343 * 21 20 19 25 25 C 1.38148 * 119.94226 * 0.02562 * 24 21 20 26 26 H 4.40643 * 5.51326 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47316 * 269.18708 * 3 2 1 28 28 H 1.09003 * 109.47054 * 149.18337 * 3 2 1 29 29 H 0.97000 * 119.99571 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47389 * 60.00120 * 16 13 4 31 31 H 1.09000 * 109.47216 * 299.99546 * 16 13 4 32 32 H 1.09002 * 109.47306 * 59.99822 * 17 16 13 33 33 H 1.09004 * 109.47310 * 299.99989 * 17 16 13 34 34 H 1.07994 * 119.96887 * 359.97438 * 19 18 17 35 35 H 1.07999 * 120.02664 * 180.25281 * 20 19 18 36 36 H 1.09003 * 109.47343 * 300.00151 * 23 22 21 37 37 H 1.09001 * 109.47138 * 59.99819 * 23 22 21 38 38 H 1.08997 * 109.47252 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.03210 * 179.97438 * 24 21 20 40 40 H 1.08003 * 119.97186 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2050 -0.6736 5 6 3.2979 -2.3661 0.0338 6 1 3.7566 -3.2241 -0.4349 7 6 2.8735 -2.4402 1.3533 8 7 1.9062 -1.6554 1.7787 9 14 3.6750 -3.6540 2.5255 10 1 4.7289 -4.4141 1.8066 11 1 4.2846 -2.9166 3.6611 12 1 2.6490 -4.5959 3.0406 13 16 3.4904 -1.1636 -2.2904 14 8 4.4585 -2.1894 -2.4628 15 8 3.8118 0.1972 -2.5439 16 6 1.9345 -1.6130 -3.1076 17 6 2.1355 -1.6094 -4.6244 18 6 0.8431 -1.9834 -5.3033 19 6 0.5677 -3.3098 -5.5804 20 6 -0.6188 -3.6556 -6.1975 21 6 -1.5292 -2.6698 -6.5500 22 8 -2.6942 -3.0069 -7.1630 23 6 -2.9171 -4.3960 -7.4138 24 6 -1.2479 -1.3392 -6.2760 25 6 -0.0624 -0.9991 -5.6536 26 1 -1.0498 -0.0001 -0.0003 27 1 3.0093 0.0154 1.0275 28 1 3.0089 0.8834 -0.5265 29 1 1.6099 -1.7070 2.7009 30 1 1.1628 -0.8905 -2.8421 31 1 1.6281 -2.6076 -2.7838 32 1 2.9074 -2.3317 -4.8903 33 1 2.4418 -0.6146 -4.9480 34 1 1.2790 -4.0762 -5.3106 35 1 -0.8353 -4.6921 -6.4101 36 1 -2.1256 -4.7806 -8.0571 37 1 -2.9146 -4.9406 -6.4696 38 1 -3.8810 -4.5264 -7.9055 39 1 -1.9547 -0.5699 -6.5497 40 1 0.1568 0.0366 -5.4397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798489172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:47 Heat of formation + Delta-G solvation = -14.676773 kcal Electronic energy + Delta-G solvation = -24814.903400 eV Core-core repulsion = 21110.666399 eV Total energy + Delta-G solvation = -3704.237001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.14257 -37.78899 -36.34658 -35.76831 -34.58144 -33.38982 -32.05317 -31.15574 -31.06068 -28.98614 -27.26234 -26.60049 -24.04231 -23.42129 -22.59671 -20.78990 -18.48672 -18.19841 -17.88955 -16.94107 -16.50927 -16.31155 -15.85222 -15.56708 -14.94839 -14.89223 -14.58390 -14.23958 -14.04832 -13.62382 -13.44370 -13.30768 -12.92231 -12.85683 -12.43040 -12.11851 -11.99397 -11.87346 -11.58937 -11.29168 -11.02802 -10.99907 -10.93902 -10.80393 -10.78872 -10.60977 -10.46174 -10.29052 -9.82364 -9.45624 -9.25314 -8.96921 -8.86234 -8.32092 -7.99953 -6.61163 -3.95152 1.37112 1.40593 1.57333 3.06112 3.14860 3.17933 3.22597 3.63298 3.78859 3.99445 4.12807 4.42810 4.64411 4.73848 4.85486 4.94935 4.96336 4.99323 5.15292 5.23750 5.25314 5.41184 5.44690 5.54777 5.58147 5.61173 5.73310 5.91753 6.05312 6.21644 6.31177 6.32105 6.39176 6.62153 6.73335 6.77088 6.78701 6.96801 7.13308 7.25201 7.34182 8.15776 8.56514 8.86068 8.98810 10.30868 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.003495 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.327684 B = 8008.527041 C = 8315.076673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.111 4.111 3 C 0.233 3.767 4 N -0.799 5.799 5 C -0.245 4.245 6 H 0.123 0.877 7 C 0.027 3.973 8 N -0.819 5.819 9 Si 0.927 3.073 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.280 1.280 13 S 2.480 3.520 14 O -0.982 6.982 15 O -0.997 6.997 16 C -0.656 4.656 17 C -0.063 4.063 18 C -0.098 4.098 19 C -0.079 4.079 20 C -0.204 4.204 21 C 0.112 3.888 22 O -0.321 6.321 23 C 0.028 3.972 24 C -0.148 4.148 25 C -0.079 4.079 26 H 0.196 0.804 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.275 0.725 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -2.534 -9.798 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.114 4.114 3 C 0.108 3.892 4 N -0.621 5.621 5 C -0.392 4.392 6 H 0.140 0.860 7 C -0.185 4.185 8 N -0.458 5.458 9 Si 0.752 3.248 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.206 1.206 13 S 2.578 3.422 14 O -0.971 6.971 15 O -0.987 6.987 16 C -0.774 4.774 17 C -0.102 4.102 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.223 4.223 21 C 0.068 3.932 22 O -0.235 6.235 23 C -0.067 4.067 24 C -0.167 4.167 25 C -0.097 4.097 26 H 0.214 0.786 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.339 -2.064 -10.386 12.342 hybrid contribution -1.072 -1.217 0.689 1.762 sum -7.412 -3.281 -9.697 12.639 Atomic orbital electron populations 1.24223 0.95317 1.04138 1.05105 1.23459 0.94600 0.96826 0.96500 1.18454 0.83719 0.86743 1.00311 1.55025 1.71899 1.14567 1.20576 1.20127 1.31219 0.94508 0.93349 0.85962 1.25574 0.95235 0.98547 0.99115 1.70245 1.21134 1.36673 1.17758 0.85838 0.79529 0.79664 0.79753 1.18479 1.20069 1.20566 1.13669 0.80410 0.73816 0.74259 1.93364 1.59352 1.59047 1.85351 1.93348 1.84944 1.35448 1.84937 1.31257 1.30462 1.11074 1.04656 1.20212 0.94755 1.02301 0.92898 1.19834 0.97291 0.93251 0.99482 1.20892 0.96169 0.95981 0.96686 1.21183 0.96191 0.98749 1.06191 1.18994 0.85648 0.93925 0.94672 1.86039 1.36108 1.26755 1.74580 1.23016 1.02292 0.80424 1.00962 1.20381 0.98706 0.93500 1.04117 1.20915 0.92597 0.99642 0.96584 0.78645 0.86814 0.89841 0.91401 0.87281 0.87005 0.90563 0.90574 0.85596 0.85658 0.92780 0.92696 0.88460 0.85367 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.49 19.25 29.55 0.57 -4.92 16 2 C -0.11 -2.45 11.24 -37.12 -0.42 -2.87 16 3 C 0.23 5.17 5.43 -6.83 -0.04 5.14 16 4 N -0.80 -18.63 2.81 -62.77 -0.18 -18.80 16 5 C -0.25 -5.92 9.42 -15.06 -0.14 -6.06 16 6 H 0.12 2.94 7.17 -52.49 -0.38 2.57 16 7 C 0.03 0.63 4.91 -17.43 -0.09 0.55 16 8 N -0.82 -19.27 8.98 55.49 0.50 -18.78 16 9 Si 0.93 18.28 29.62 -169.99 -5.04 13.24 16 10 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 13 S 2.48 55.27 5.39 -107.50 -0.58 54.70 16 14 O -0.98 -24.23 16.77 -57.54 -0.96 -25.19 16 15 O -1.00 -23.67 16.54 -57.54 -0.95 -24.63 16 16 C -0.66 -12.53 6.16 37.16 0.23 -12.30 16 17 C -0.06 -1.06 5.35 -27.88 -0.15 -1.21 16 18 C -0.10 -1.52 5.13 -104.60 -0.54 -2.05 16 19 C -0.08 -1.14 9.69 -39.60 -0.38 -1.52 16 20 C -0.20 -2.67 9.04 -39.43 -0.36 -3.03 16 21 C 0.11 1.53 6.69 -39.21 -0.26 1.27 16 22 O -0.32 -3.97 10.50 -19.41 -0.20 -4.17 16 23 C 0.03 0.23 9.81 101.05 0.99 1.22 16 24 C -0.15 -2.03 9.99 -39.43 -0.39 -2.42 16 25 C -0.08 -1.14 9.69 -39.61 -0.38 -1.53 16 26 H 0.20 3.31 7.80 -54.10 -0.42 2.89 16 27 H 0.11 2.56 6.43 -51.93 -0.33 2.23 16 28 H 0.08 1.74 6.84 -51.93 -0.36 1.38 16 29 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 30 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 31 H 0.11 2.15 8.14 -51.92 -0.42 1.73 16 32 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 33 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 36 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -29.78 356.69 -8.52 -38.30 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.12 Total: 9.68 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -1.36 Total: -29.73 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.32 Total: -37.58 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.12 Total: -53.99 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.04 Total: 13.24 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.58 Total: 54.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.78 -8.52 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798489172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.627 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds