Wall clock time and date at job start Tue Mar 31 2020 14:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76193 * 103.00077 * 2 1 4 4 C 1.38954 * 120.00988 * 179.97438 * 3 2 1 5 5 C 1.38039 * 119.98770 * 180.29999 * 4 3 2 6 6 C 1.38864 * 120.01224 * 359.44367 * 5 4 3 7 7 N 1.40153 * 119.99410 * 180.27641 * 6 5 4 8 8 C 1.34776 * 120.00144 * 213.59022 * 7 6 5 9 9 O 1.21289 * 119.99983 * 5.27913 * 8 7 6 10 10 C 1.50701 * 119.99525 * 185.27474 * 8 7 6 11 11 O 1.45199 * 109.46692 * 180.02562 * 10 8 7 12 12 C 1.34231 * 117.00099 * 180.02562 * 11 10 8 13 13 O 1.20829 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00387 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47408 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47109 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00365 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99622 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99768 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46765 * 90.00290 * 20 18 16 22 22 H 1.48502 * 109.47200 * 210.00148 * 20 18 16 23 23 H 1.48496 * 109.46906 * 330.00248 * 20 18 16 24 24 C 1.38873 * 120.01995 * 0.55777 * 6 5 4 25 25 C 1.38042 * 120.00202 * 359.72052 * 24 6 5 26 26 H 1.08995 * 109.47287 * 300.00209 * 1 2 3 27 27 H 1.09007 * 109.46923 * 60.00302 * 1 2 3 28 28 H 1.09007 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00476 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99158 * 179.70034 * 5 4 3 31 31 H 0.97003 * 119.99141 * 33.59172 * 7 6 5 32 32 H 1.09005 * 109.47393 * 299.99847 * 10 8 7 33 33 H 1.08994 * 109.47367 * 60.00572 * 10 8 7 34 34 H 1.09000 * 109.47049 * 299.99796 * 14 12 11 35 35 H 1.09005 * 109.47135 * 59.99626 * 14 12 11 36 36 H 1.09000 * 109.46931 * 299.99968 * 15 14 12 37 37 H 1.08991 * 109.47122 * 59.99869 * 15 14 12 38 38 H 0.97000 * 120.00092 * 180.02562 * 19 18 16 39 39 H 1.07995 * 119.99437 * 179.70062 * 24 6 5 40 40 H 1.08007 * 119.99560 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5391 2.1232 0.0005 5 6 3.8491 3.4683 0.0068 6 6 2.8334 4.4153 0.0009 7 7 3.1487 5.7809 0.0014 8 6 2.3496 6.6567 0.6424 9 8 1.4121 6.2545 1.2984 10 6 2.6212 8.1358 0.5441 11 8 1.6292 8.8623 1.3163 12 6 1.7300 10.2008 1.3324 13 8 2.6180 10.7471 0.7217 14 6 0.7356 11.0220 2.1120 15 6 1.0741 12.5069 1.9654 16 6 0.0800 13.3281 2.7456 17 1 -0.7140 12.8398 3.2910 18 6 0.1843 14.7028 2.7630 19 7 -0.6829 15.4194 3.4443 20 14 1.5581 15.5473 1.8202 21 1 1.0993 15.8479 0.4402 22 1 1.9246 16.8122 2.5065 23 1 2.7424 14.6533 1.7644 24 6 1.5053 4.0095 0.0004 25 6 1.1944 2.6646 -0.0001 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 4.3291 1.3869 0.0005 30 1 4.8818 3.7843 0.0121 31 1 3.9420 6.0956 -0.4597 32 1 3.6152 8.3497 0.9372 33 1 2.5686 8.4463 -0.4994 34 1 -0.2678 10.8381 1.7281 35 1 0.7789 10.7420 3.1646 36 1 2.0775 12.6904 2.3496 37 1 1.0311 12.7872 0.9131 38 1 -0.6098 16.3866 3.4562 39 1 0.7157 4.7463 0.0007 40 1 0.1614 2.3492 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:21 Heat of formation + Delta-G solvation = -96.027390 kcal Electronic energy + Delta-G solvation = -23075.832402 eV Core-core repulsion = 19368.067774 eV Total energy + Delta-G solvation = -3707.764628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02004 -40.13139 -38.73032 -36.33410 -35.20035 -33.67659 -31.67366 -31.55226 -30.87083 -29.37120 -28.52055 -26.28955 -23.59760 -23.08877 -21.92968 -20.88928 -19.93415 -18.53847 -17.92830 -17.87333 -17.10036 -16.85237 -16.69918 -15.76208 -15.59084 -15.36247 -14.93751 -14.74601 -14.30920 -14.23971 -14.06122 -13.88614 -13.68898 -13.25611 -13.19100 -12.82718 -12.54081 -12.52049 -12.41306 -11.82008 -11.51900 -11.10291 -11.06266 -10.79556 -10.76731 -10.40011 -10.28763 -10.19094 -9.99859 -9.76950 -9.41954 -9.32806 -9.29138 -8.58345 -7.66068 -6.09450 -4.09712 0.66710 0.94867 1.10080 1.95813 2.09593 2.12160 2.53255 3.18082 3.28998 3.31569 3.38789 3.46732 4.13466 4.40438 4.43344 4.50016 4.58786 4.59928 4.80339 4.80720 4.84725 5.01342 5.05926 5.19626 5.24156 5.24909 5.49753 5.59406 5.83356 5.86803 5.95032 5.96071 5.99129 6.33357 6.49975 6.62587 6.85220 7.18429 7.26060 7.63972 7.66978 8.03802 8.44050 8.93037 9.51784 11.03092 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.037426 B = 0.001767 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.971975 B =15844.668054 C =16459.693191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.122 6.122 3 C -0.101 4.101 4 C -0.080 4.080 5 C -0.126 4.126 6 C 0.147 3.853 7 N -0.673 5.673 8 C 0.516 3.484 9 O -0.491 6.491 10 C 0.047 3.953 11 O -0.339 6.339 12 C 0.461 3.539 13 O -0.510 6.510 14 C -0.094 4.094 15 C -0.002 4.002 16 C -0.528 4.528 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 C -0.100 4.100 25 C -0.111 4.111 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.414 0.586 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.026 0.974 37 H 0.022 0.978 38 H 0.265 0.735 39 H 0.140 0.860 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -31.168 -10.359 33.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.120 5.880 3 C -0.214 4.214 4 C -0.104 4.104 5 C -0.148 4.148 6 C 0.051 3.949 7 N -0.321 5.321 8 C 0.302 3.698 9 O -0.363 6.363 10 C -0.031 4.031 11 O -0.256 6.256 12 C 0.305 3.695 13 O -0.397 6.397 14 C -0.131 4.131 15 C -0.039 4.039 16 C -0.566 4.566 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.122 4.122 25 C -0.136 4.136 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.158 0.842 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.633 -32.096 -10.010 34.712 hybrid contribution 0.392 1.864 -0.785 2.060 sum 9.025 -30.232 -10.794 33.346 Atomic orbital electron populations 1.23690 0.94507 1.07193 1.05918 1.85428 1.06758 1.03074 1.92782 1.21672 0.96643 0.96543 1.06506 1.20524 0.94347 0.95283 1.00210 1.20817 0.98568 0.91963 1.03407 1.17718 0.93692 0.82556 1.00902 1.43414 1.29118 1.05050 1.54538 1.20405 0.82680 0.87887 0.78781 1.90783 1.28610 1.79398 1.37521 1.22482 0.93871 0.88103 0.98631 1.86664 1.51348 1.21637 1.65940 1.24947 0.85710 0.79632 0.79192 1.90630 1.34776 1.72034 1.42236 1.21589 0.96324 0.95526 0.99702 1.19498 0.98090 0.88451 0.97887 1.21024 1.13207 0.91318 1.31054 0.90571 1.24959 0.95825 0.97383 0.94937 1.69906 1.36116 1.06216 1.41512 0.86798 0.83435 0.79096 0.80208 1.20173 1.21292 1.18634 1.21096 0.95572 0.95996 0.99542 1.21063 0.98467 0.92379 1.01643 0.89532 0.89625 0.87339 0.84974 0.84893 0.74943 0.87954 0.87830 0.88014 0.87979 0.95549 0.95996 0.92570 0.84204 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.15 101.05 0.92 0.23 16 2 S -0.12 -0.90 22.56 -107.50 -2.43 -3.33 16 3 C -0.10 -0.87 6.11 -39.06 -0.24 -1.11 16 4 C -0.08 -0.62 9.78 -39.39 -0.39 -1.01 16 5 C -0.13 -0.93 9.95 -39.42 -0.39 -1.32 16 6 C 0.15 1.35 6.28 -83.58 -0.53 0.82 16 7 N -0.67 -5.35 5.35 -9.81 -0.05 -5.40 16 8 C 0.52 5.82 7.65 -10.99 -0.08 5.74 16 9 O -0.49 -7.53 14.19 -14.11 -0.20 -7.73 16 10 C 0.05 0.53 5.95 36.01 0.21 0.74 16 11 O -0.34 -5.33 9.75 -45.90 -0.45 -5.77 16 12 C 0.46 8.24 7.96 36.00 0.29 8.53 16 13 O -0.51 -10.08 15.73 -18.75 -0.29 -10.38 16 14 C -0.09 -1.81 5.75 -27.89 -0.16 -1.97 16 15 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 16 C -0.53 -14.77 9.66 -34.44 -0.33 -15.10 16 17 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 20 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 24 C -0.10 -1.04 8.65 -39.42 -0.34 -1.38 16 25 C -0.11 -1.01 9.36 -39.39 -0.37 -1.37 16 26 H 0.09 0.41 7.74 -51.93 -0.40 0.00 16 27 H 0.08 0.36 7.75 -51.92 -0.40 -0.04 16 28 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.41 1.76 8.82 -40.82 -0.36 1.40 16 32 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 36 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 37 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.14 1.62 6.41 -52.49 -0.34 1.28 16 40 H 0.13 0.94 5.87 -52.48 -0.31 0.63 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -35.28 359.19 -8.61 -43.89 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.12 Total: -1.87 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.59 Total: -5.37 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.72 Total: -32.03 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.94 Total: -23.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.43 Total: -3.33 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.28 -8.61 -43.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.135 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds