Wall clock time and date at job start Tue Mar 31 2020 14:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76193 * 103.00077 * 2 1 4 4 C 1.38954 * 120.00988 * 179.97438 * 3 2 1 5 5 C 1.38039 * 119.98770 * 180.29999 * 4 3 2 6 6 C 1.38864 * 120.01224 * 359.44367 * 5 4 3 7 7 N 1.40153 * 119.99410 * 180.27641 * 6 5 4 8 8 C 1.34776 * 120.00144 * 213.59022 * 7 6 5 9 9 O 1.21289 * 119.99983 * 5.27913 * 8 7 6 10 10 C 1.50701 * 119.99525 * 185.27474 * 8 7 6 11 11 O 1.45199 * 109.46692 * 180.02562 * 10 8 7 12 12 C 1.34231 * 117.00099 * 180.02562 * 11 10 8 13 13 O 1.20829 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00387 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47408 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47109 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00365 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99622 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99768 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46765 * 90.00290 * 20 18 16 22 22 H 1.48502 * 109.47200 * 210.00148 * 20 18 16 23 23 H 1.48496 * 109.46906 * 330.00248 * 20 18 16 24 24 C 1.38873 * 120.01995 * 0.55777 * 6 5 4 25 25 C 1.38042 * 120.00202 * 359.72052 * 24 6 5 26 26 H 1.08995 * 109.47287 * 300.00209 * 1 2 3 27 27 H 1.09007 * 109.46923 * 60.00302 * 1 2 3 28 28 H 1.09007 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00476 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99158 * 179.70034 * 5 4 3 31 31 H 0.97003 * 119.99141 * 33.59172 * 7 6 5 32 32 H 1.09005 * 109.47393 * 299.99847 * 10 8 7 33 33 H 1.08994 * 109.47367 * 60.00572 * 10 8 7 34 34 H 1.09000 * 109.47049 * 299.99796 * 14 12 11 35 35 H 1.09005 * 109.47135 * 59.99626 * 14 12 11 36 36 H 1.09000 * 109.46931 * 299.99968 * 15 14 12 37 37 H 1.08991 * 109.47122 * 59.99869 * 15 14 12 38 38 H 0.97000 * 120.00092 * 180.02562 * 19 18 16 39 39 H 1.07995 * 119.99437 * 179.70062 * 24 6 5 40 40 H 1.08007 * 119.99560 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5391 2.1232 0.0005 5 6 3.8491 3.4683 0.0068 6 6 2.8334 4.4153 0.0009 7 7 3.1487 5.7809 0.0014 8 6 2.3496 6.6567 0.6424 9 8 1.4121 6.2545 1.2984 10 6 2.6212 8.1358 0.5441 11 8 1.6292 8.8623 1.3163 12 6 1.7300 10.2008 1.3324 13 8 2.6180 10.7471 0.7217 14 6 0.7356 11.0220 2.1120 15 6 1.0741 12.5069 1.9654 16 6 0.0800 13.3281 2.7456 17 1 -0.7140 12.8398 3.2910 18 6 0.1843 14.7028 2.7630 19 7 -0.6829 15.4194 3.4443 20 14 1.5581 15.5473 1.8202 21 1 1.0993 15.8479 0.4402 22 1 1.9246 16.8122 2.5065 23 1 2.7424 14.6533 1.7644 24 6 1.5053 4.0095 0.0004 25 6 1.1944 2.6646 -0.0001 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 4.3291 1.3869 0.0005 30 1 4.8818 3.7843 0.0121 31 1 3.9420 6.0956 -0.4597 32 1 3.6152 8.3497 0.9372 33 1 2.5686 8.4463 -0.4994 34 1 -0.2678 10.8381 1.7281 35 1 0.7789 10.7420 3.1646 36 1 2.0775 12.6904 2.3496 37 1 1.0311 12.7872 0.9131 38 1 -0.6098 16.3866 3.4562 39 1 0.7157 4.7463 0.0007 40 1 0.1614 2.3492 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:21 Heat of formation + Delta-G solvation = -117.285647 kcal Electronic energy + Delta-G solvation = -23076.754229 eV Core-core repulsion = 19368.067774 eV Total energy + Delta-G solvation = -3708.686456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96542 -41.29003 -39.52740 -37.63170 -36.00091 -35.63556 -33.47522 -32.27959 -31.70536 -29.92907 -29.41345 -28.00630 -24.43887 -23.87686 -23.41683 -21.70808 -21.49432 -19.43652 -19.25832 -18.63660 -18.44903 -17.98117 -17.96178 -16.92110 -16.60902 -16.25483 -16.07391 -15.69550 -15.53609 -15.06633 -15.03526 -14.76162 -14.74101 -14.49880 -14.04047 -13.93567 -13.77971 -13.65631 -13.31955 -13.02731 -12.92422 -12.44278 -12.25793 -12.03629 -11.92427 -11.80560 -11.78902 -11.57346 -11.42873 -11.37672 -11.02403 -10.78166 -10.05355 -9.99887 -8.30908 -8.26359 -6.35882 -0.01163 0.30598 0.57453 1.12185 1.13163 1.28814 1.36309 1.38253 1.45006 1.51568 2.18385 2.35630 2.64023 3.04449 3.35719 3.79001 3.84103 3.89027 3.99183 4.03990 4.23006 4.24968 4.25713 4.31662 4.37757 4.39847 4.43786 4.80784 4.81844 4.87148 4.97265 5.15045 5.20876 5.23114 5.29434 5.32272 5.36768 5.58458 5.83615 6.19446 6.22005 6.65435 6.74618 6.89362 7.29215 8.84759 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.037426 B = 0.001767 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.971975 B =15844.668054 C =16459.693191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.138 6.138 3 C -0.108 4.108 4 C -0.086 4.086 5 C -0.115 4.115 6 C 0.130 3.870 7 N -0.652 5.652 8 C 0.520 3.480 9 O -0.540 6.540 10 C 0.042 3.958 11 O -0.347 6.347 12 C 0.476 3.524 13 O -0.529 6.529 14 C -0.093 4.093 15 C 0.003 3.997 16 C -0.535 4.535 17 H 0.048 0.952 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.943 3.057 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.253 1.253 24 C -0.120 4.120 25 C -0.121 4.121 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.165 0.835 31 H 0.434 0.566 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.268 0.732 39 H 0.120 0.880 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -32.528 -11.737 36.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.103 5.897 3 C -0.221 4.221 4 C -0.109 4.109 5 C -0.137 4.137 6 C 0.034 3.966 7 N -0.301 5.301 8 C 0.307 3.693 9 O -0.415 6.415 10 C -0.035 4.035 11 O -0.263 6.263 12 C 0.321 3.679 13 O -0.418 6.418 14 C -0.131 4.131 15 C -0.035 4.035 16 C -0.573 4.573 17 H 0.066 0.934 18 C -0.186 4.186 19 N -0.584 5.584 20 Si 0.767 3.233 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.177 1.177 24 C -0.142 4.142 25 C -0.145 4.145 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.274 0.726 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.871 -33.500 -11.419 37.024 hybrid contribution -0.345 2.097 -0.350 2.154 sum 10.525 -31.403 -11.769 35.148 Atomic orbital electron populations 1.23780 0.92350 1.08476 1.06285 1.85442 1.09259 1.02333 1.92619 1.21886 0.97075 0.97064 1.06117 1.20873 0.94525 0.95992 0.99558 1.21114 0.99573 0.91365 1.01622 1.17880 0.93758 0.83134 1.01828 1.43172 1.29031 1.04373 1.53499 1.20440 0.82286 0.88179 0.78367 1.90777 1.30762 1.80033 1.39941 1.22860 0.93733 0.87409 0.99482 1.86588 1.52774 1.20433 1.66533 1.24278 0.84799 0.80308 0.78533 1.90621 1.35443 1.72654 1.43115 1.21355 0.97476 0.93304 1.00936 1.19331 0.96440 0.90919 0.96764 1.21357 1.13216 0.91933 1.30751 0.93410 1.25861 0.98359 0.98333 0.96015 1.70037 1.38254 1.06710 1.43403 0.85764 0.80440 0.78108 0.79032 1.19203 1.20627 1.17712 1.21080 0.95939 0.96210 1.00991 1.21181 0.99286 0.92113 1.01931 0.89436 0.89007 0.85573 0.83146 0.81794 0.72624 0.85514 0.85533 0.87022 0.87063 0.95998 0.96117 0.92319 0.86203 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.15 113.37 1.04 -0.14 16 2 S -0.14 -1.89 22.56 -56.49 -1.27 -3.17 16 3 C -0.11 -1.77 6.11 22.61 0.14 -1.63 16 4 C -0.09 -1.17 9.78 22.39 0.22 -0.95 16 5 C -0.12 -1.43 9.95 22.37 0.22 -1.21 16 6 C 0.13 2.21 6.28 38.11 0.24 2.45 16 7 N -0.65 -9.10 5.35 -303.33 -1.62 -10.72 16 8 C 0.52 11.09 7.65 87.66 0.67 11.76 16 9 O -0.54 -16.61 14.19 15.74 0.22 -16.39 16 10 C 0.04 0.84 5.95 71.24 0.42 1.27 16 11 O -0.35 -10.37 9.75 -45.07 -0.44 -10.81 16 12 C 0.48 16.24 7.96 71.23 0.57 16.81 16 13 O -0.53 -19.80 15.73 21.96 0.35 -19.46 16 14 C -0.09 -3.51 5.75 29.85 0.17 -3.34 16 15 C 0.00 0.14 3.33 29.85 0.10 0.24 16 16 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 17 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 18 C 0.01 0.70 5.47 84.65 0.46 1.17 16 19 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 20 Si 0.94 44.75 27.47 68.60 1.88 46.63 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 24 C -0.12 -2.50 8.65 22.38 0.19 -2.31 16 25 C -0.12 -2.17 9.36 22.39 0.21 -1.96 16 26 H 0.09 0.74 7.74 -2.39 -0.02 0.72 16 27 H 0.09 0.67 7.75 -2.39 -0.02 0.66 16 28 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.43 2.39 8.82 -92.71 -0.82 1.57 16 32 H 0.13 1.98 8.13 -2.38 -0.02 1.96 16 33 H 0.13 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.11 3.96 8.14 -2.38 -0.02 3.94 16 36 H 0.02 1.04 7.15 -2.39 -0.02 1.03 16 37 H 0.02 0.97 7.53 -2.39 -0.02 0.95 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.12 2.94 6.41 -2.91 -0.02 2.92 16 40 H 0.14 2.02 5.87 -2.91 -0.02 2.00 16 Total: -1.00 -76.89 359.19 4.52 -72.37 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.20 Total: 7.51 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.90 Total: -7.81 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.32 Total: -68.87 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: 0.13 Total: -46.66 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -1.27 Total: -3.17 kcal Total: -76.89 4.52 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.913 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds