Wall clock time and date at job start Tue Mar 31 2020 13:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 S 1.81397 * 109.47188 * 239.99855 * 2 1 3 5 5 C 1.76198 * 103.00057 * 70.27039 * 4 2 1 6 6 C 1.39050 * 120.18414 * 6.01125 * 5 4 2 7 7 C 1.37911 * 120.05614 * 179.69556 * 6 5 4 8 8 C 1.38649 * 120.43305 * 0.60536 * 7 6 5 9 9 C 1.37731 * 120.37249 * 359.67449 * 8 7 6 10 10 C 1.39742 * 119.93149 * 0.02562 * 9 8 7 11 11 C 1.47391 * 120.21381 * 180.02562 * 10 9 8 12 12 O 1.21607 * 120.00051 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99839 * 359.97438 * 11 10 9 14 14 C 1.46501 * 119.99975 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47081 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46992 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00310 * 359.97438 * 16 15 14 18 18 C 1.37887 * 119.99971 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00033 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99675 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47030 * 90.00306 * 20 18 16 22 22 H 1.48503 * 109.47078 * 210.00003 * 20 18 16 23 23 H 1.48494 * 109.47594 * 330.00005 * 20 18 16 24 24 C 1.50699 * 109.47423 * 119.99628 * 2 1 3 25 25 O 1.20825 * 119.99897 * 99.99957 * 24 2 1 26 26 O 1.34228 * 120.00126 * 280.28188 * 24 2 1 27 27 H 1.08997 * 109.47105 * 65.40231 * 1 2 3 28 28 H 1.09001 * 109.47039 * 185.39689 * 1 2 3 29 29 H 1.09001 * 109.47286 * 305.39445 * 1 2 3 30 30 H 1.07993 * 119.96968 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.77919 * 180.27447 * 7 6 5 32 32 H 1.07996 * 119.81056 * 179.69905 * 8 7 6 33 33 H 1.08008 * 120.03355 * 180.02562 * 9 8 7 34 34 H 0.97003 * 119.99981 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47059 * 299.99752 * 14 13 11 36 36 H 1.09002 * 109.47095 * 60.00035 * 14 13 11 37 37 H 1.09001 * 109.47539 * 299.99950 * 15 14 13 38 38 H 1.09002 * 109.47006 * 60.00129 * 15 14 13 39 39 H 0.96997 * 120.00618 * 180.02562 * 19 18 16 40 40 H 0.96698 * 116.99945 * 179.72413 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.7204 0.2609 -2.7801 6 6 1.1939 1.5134 -2.4843 7 6 0.8764 2.3873 -3.5029 8 6 1.0668 2.0217 -4.8267 9 6 1.5818 0.7834 -5.1401 10 6 1.9146 -0.1118 -4.1200 11 6 2.4667 -1.4384 -4.4482 12 8 2.7554 -2.2143 -3.5574 13 7 2.6514 -1.7917 -5.7357 14 6 3.2007 -3.1101 -6.0620 15 6 3.3074 -3.2563 -7.5812 16 6 3.8718 -4.6127 -7.9168 17 1 4.1291 -5.3014 -7.1258 18 6 4.0607 -4.9741 -9.2340 19 7 4.5537 -6.1576 -9.5269 20 14 3.6164 -3.7827 -10.6023 21 1 4.7942 -2.9374 -10.9245 22 1 3.2093 -4.5452 -11.8098 23 1 2.4927 -2.9183 -10.1606 24 6 2.0324 -0.7103 1.2305 25 8 2.4051 -1.8572 1.1561 26 8 2.0606 -0.0707 2.4102 27 1 -0.3633 0.4277 -0.9344 28 1 -0.3633 -1.0231 0.0967 29 1 -0.3634 0.5952 0.8377 30 1 1.0377 1.8038 -1.4560 31 1 0.4719 3.3607 -3.2679 32 1 0.8102 2.7121 -5.6166 33 1 1.7282 0.5044 -6.1732 34 1 2.4208 -1.1729 -6.4463 35 1 4.1902 -3.2118 -5.6164 36 1 2.5433 -3.8852 -5.6680 37 1 2.3177 -3.1547 -8.0265 38 1 3.9646 -2.4812 -7.9755 39 1 4.6870 -6.4118 -10.4534 40 1 2.3872 -0.5688 3.1720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833545251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:56 Heat of formation + Delta-G solvation = -98.741280 kcal Electronic energy + Delta-G solvation = -23912.800703 eV Core-core repulsion = 20204.918391 eV Total energy + Delta-G solvation = -3707.882311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57675 -40.10377 -38.29818 -36.49789 -35.11248 -33.99614 -32.91219 -31.61660 -31.17787 -29.84628 -25.66464 -25.42752 -23.70435 -22.94082 -21.94563 -20.86542 -20.37079 -18.70476 -18.29087 -17.29273 -16.91750 -16.69638 -16.03626 -15.78215 -15.65185 -15.14507 -14.86830 -14.72487 -14.36197 -14.16228 -13.84201 -13.63342 -13.35251 -13.17840 -12.88343 -12.68002 -12.57799 -12.36777 -12.01231 -11.86315 -11.53196 -11.36650 -11.22635 -10.86872 -10.70954 -10.42020 -10.13090 -10.01647 -9.95451 -9.38002 -9.30485 -9.15887 -8.66994 -8.57606 -7.51201 -6.10999 -4.11242 0.60860 0.92342 1.04157 1.82368 2.19195 2.67585 2.86728 3.24721 3.32076 3.33344 3.48045 3.67260 4.30404 4.37289 4.39554 4.51688 4.58282 4.72866 4.77884 5.01354 5.10004 5.12535 5.21690 5.23904 5.31127 5.52514 5.62226 5.81122 5.94018 6.08626 6.10633 6.12250 6.19661 6.49068 6.54715 6.68067 7.11033 7.21585 7.48618 7.65600 7.80769 8.40320 8.47130 8.93721 9.48795 11.02078 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.002829 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.156733 B = 9894.082762 C =11301.051048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.154 4.154 3 H 0.120 0.880 4 S 0.088 5.912 5 C -0.062 4.062 6 C -0.149 4.149 7 C -0.076 4.076 8 C -0.135 4.135 9 C -0.065 4.065 10 C -0.118 4.118 11 C 0.542 3.458 12 O -0.514 6.514 13 N -0.716 5.716 14 C 0.130 3.870 15 C -0.022 4.022 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.503 3.497 25 O -0.489 6.489 26 O -0.513 6.513 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.395 0.605 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 22.133 18.108 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.282 4.282 3 H 0.138 0.862 4 S 0.335 5.665 5 C -0.177 4.177 6 C -0.174 4.174 7 C -0.096 4.096 8 C -0.156 4.156 9 C -0.085 4.085 10 C -0.128 4.128 11 C 0.328 3.672 12 O -0.394 6.394 13 N -0.367 5.367 14 C 0.008 3.992 15 C -0.060 4.060 16 C -0.561 4.561 17 H 0.095 0.905 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C 0.343 3.657 25 O -0.375 6.375 26 O -0.326 6.326 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.428 20.145 18.346 28.832 hybrid contribution -0.660 1.893 -0.731 2.134 sum -10.089 22.038 17.615 29.962 Atomic orbital electron populations 1.22027 0.89715 1.04432 1.03934 1.23765 1.02243 1.05437 0.96726 0.86159 1.88145 1.70414 1.18193 0.89772 1.22357 1.00331 0.97834 0.97173 1.21146 1.03205 0.92950 1.00058 1.21198 0.96920 0.98916 0.92598 1.21096 1.01159 0.96686 0.96699 1.21342 0.95392 0.93182 0.98572 1.19717 1.05464 0.95740 0.91868 1.18144 0.79186 0.86188 0.83663 1.90693 1.51175 1.51932 1.45571 1.46197 1.64510 1.19584 1.06368 1.21577 0.98286 0.81012 0.98353 1.19800 0.97229 0.98586 0.90365 1.20911 1.42705 0.98808 0.93696 0.90550 1.25003 0.94455 0.95127 0.98698 1.69898 1.44763 1.19917 1.19032 0.86754 0.79267 0.81356 0.81709 1.20222 1.21265 1.19083 1.22242 0.74685 0.84891 0.83930 1.90814 1.43067 1.18042 1.85554 1.84480 1.79480 1.49397 1.19211 0.90178 0.90545 0.90909 0.85225 0.85335 0.85146 0.84877 0.77007 0.91635 0.91587 0.95973 0.96422 0.92533 0.72632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.70 37.16 0.32 -0.76 16 2 C -0.15 -1.46 2.50 -27.88 -0.07 -1.53 16 3 H 0.12 0.88 6.83 -51.93 -0.35 0.53 16 4 S 0.09 1.23 17.45 -107.50 -1.88 -0.64 16 5 C -0.06 -0.77 6.03 -38.46 -0.23 -1.00 16 6 C -0.15 -1.35 8.05 -39.40 -0.32 -1.67 16 7 C -0.08 -0.58 10.03 -39.55 -0.40 -0.98 16 8 C -0.14 -1.11 10.02 -39.62 -0.40 -1.50 16 9 C -0.06 -0.67 9.53 -39.21 -0.37 -1.04 16 10 C -0.12 -1.59 5.89 -104.79 -0.62 -2.21 16 11 C 0.54 9.25 7.75 -12.53 -0.10 9.15 16 12 O -0.51 -10.47 13.77 5.27 0.07 -10.40 16 13 N -0.72 -11.94 5.51 -61.40 -0.34 -12.28 16 14 C 0.13 2.65 5.61 -4.04 -0.02 2.63 16 15 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 16 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 17 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.88 20.92 27.47 -169.99 -4.67 16.26 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 24 C 0.50 5.29 7.50 36.01 0.27 5.56 16 25 O -0.49 -7.07 16.80 -18.75 -0.32 -7.39 16 26 O -0.51 -3.62 13.42 -39.25 -0.53 -4.15 16 27 H 0.08 0.57 6.15 -51.93 -0.32 0.25 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.13 0.88 5.01 -52.49 -0.26 0.61 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 1.15 6.40 -52.48 -0.34 0.82 16 34 H 0.40 5.40 6.50 -40.82 -0.27 5.14 16 35 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 38 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.41 1.22 9.10 45.56 0.41 1.64 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -35.98 349.77 -8.10 -44.08 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.01 Total: 2.91 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.48 Total: -7.07 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.44 Total: -38.88 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.77 Total: -21.93 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -1.88 Total: -0.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.98 -8.10 -44.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833545251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.661 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds