Wall clock time and date at job start Tue Mar 31 2020 13:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 S 1.81397 * 109.47188 * 239.99855 * 2 1 3 5 5 C 1.76198 * 103.00057 * 70.27039 * 4 2 1 6 6 C 1.39050 * 120.18414 * 6.01125 * 5 4 2 7 7 C 1.37911 * 120.05614 * 179.69556 * 6 5 4 8 8 C 1.38649 * 120.43305 * 0.60536 * 7 6 5 9 9 C 1.37731 * 120.37249 * 359.67449 * 8 7 6 10 10 C 1.39742 * 119.93149 * 0.02562 * 9 8 7 11 11 C 1.47391 * 120.21381 * 180.02562 * 10 9 8 12 12 O 1.21607 * 120.00051 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99839 * 359.97438 * 11 10 9 14 14 C 1.46501 * 119.99975 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47081 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46992 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00310 * 359.97438 * 16 15 14 18 18 C 1.37887 * 119.99971 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00033 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99675 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47030 * 90.00306 * 20 18 16 22 22 H 1.48503 * 109.47078 * 210.00003 * 20 18 16 23 23 H 1.48494 * 109.47594 * 330.00005 * 20 18 16 24 24 C 1.50699 * 109.47423 * 119.99628 * 2 1 3 25 25 O 1.20825 * 119.99897 * 99.99957 * 24 2 1 26 26 O 1.34228 * 120.00126 * 280.28188 * 24 2 1 27 27 H 1.08997 * 109.47105 * 65.40231 * 1 2 3 28 28 H 1.09001 * 109.47039 * 185.39689 * 1 2 3 29 29 H 1.09001 * 109.47286 * 305.39445 * 1 2 3 30 30 H 1.07993 * 119.96968 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.77919 * 180.27447 * 7 6 5 32 32 H 1.07996 * 119.81056 * 179.69905 * 8 7 6 33 33 H 1.08008 * 120.03355 * 180.02562 * 9 8 7 34 34 H 0.97003 * 119.99981 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47059 * 299.99752 * 14 13 11 36 36 H 1.09002 * 109.47095 * 60.00035 * 14 13 11 37 37 H 1.09001 * 109.47539 * 299.99950 * 15 14 13 38 38 H 1.09002 * 109.47006 * 60.00129 * 15 14 13 39 39 H 0.96997 * 120.00618 * 180.02562 * 19 18 16 40 40 H 0.96698 * 116.99945 * 179.72413 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.7204 0.2609 -2.7801 6 6 1.1939 1.5134 -2.4843 7 6 0.8764 2.3873 -3.5029 8 6 1.0668 2.0217 -4.8267 9 6 1.5818 0.7834 -5.1401 10 6 1.9146 -0.1118 -4.1200 11 6 2.4667 -1.4384 -4.4482 12 8 2.7554 -2.2143 -3.5574 13 7 2.6514 -1.7917 -5.7357 14 6 3.2007 -3.1101 -6.0620 15 6 3.3074 -3.2563 -7.5812 16 6 3.8718 -4.6127 -7.9168 17 1 4.1291 -5.3014 -7.1258 18 6 4.0607 -4.9741 -9.2340 19 7 4.5537 -6.1576 -9.5269 20 14 3.6164 -3.7827 -10.6023 21 1 4.7942 -2.9374 -10.9245 22 1 3.2093 -4.5452 -11.8098 23 1 2.4927 -2.9183 -10.1606 24 6 2.0324 -0.7103 1.2305 25 8 2.4051 -1.8572 1.1561 26 8 2.0606 -0.0707 2.4102 27 1 -0.3633 0.4277 -0.9344 28 1 -0.3633 -1.0231 0.0967 29 1 -0.3634 0.5952 0.8377 30 1 1.0377 1.8038 -1.4560 31 1 0.4719 3.3607 -3.2679 32 1 0.8102 2.7121 -5.6166 33 1 1.7282 0.5044 -6.1732 34 1 2.4208 -1.1729 -6.4463 35 1 4.1902 -3.2118 -5.6164 36 1 2.5433 -3.8852 -5.6680 37 1 2.3177 -3.1547 -8.0265 38 1 3.9646 -2.4812 -7.9755 39 1 4.6870 -6.4118 -10.4534 40 1 2.3872 -0.5688 3.1720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833545251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:55 Heat of formation + Delta-G solvation = -125.122084 kcal Electronic energy + Delta-G solvation = -23913.944660 eV Core-core repulsion = 20204.918391 eV Total energy + Delta-G solvation = -3709.026269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40090 -41.19096 -39.28618 -37.25277 -36.72868 -34.88671 -34.69497 -32.82525 -31.94379 -31.36179 -27.11834 -26.35598 -24.82131 -23.71943 -22.85167 -22.57442 -21.51727 -19.61118 -19.16584 -19.01131 -18.21690 -17.48074 -16.97726 -16.83142 -16.59904 -16.51564 -16.18742 -15.80157 -15.62307 -15.18811 -15.01519 -14.85435 -14.59138 -14.27533 -13.94167 -13.76963 -13.37908 -13.34130 -13.08756 -13.02425 -12.72319 -12.63610 -12.27582 -12.18067 -12.07978 -11.76112 -11.72106 -11.60738 -11.48077 -10.80205 -10.78690 -10.28037 -10.24001 -9.94132 -8.49886 -8.30451 -6.38362 -0.23602 0.16954 0.24586 1.01810 1.36238 1.38796 1.42206 1.53446 1.84004 1.96767 2.19993 2.36961 2.77757 3.04397 3.64503 3.67217 3.71526 3.84718 4.09490 4.11014 4.30540 4.36091 4.39525 4.42760 4.57278 4.59350 4.64291 4.71931 4.87036 5.04825 5.07363 5.13110 5.30336 5.37608 5.38956 5.44577 5.45538 5.61922 5.85847 6.21149 6.53078 6.69667 6.82670 7.17968 7.26161 8.86592 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.002829 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.156733 B = 9894.082762 C =11301.051048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 H 0.149 0.851 4 S -0.018 6.018 5 C -0.064 4.064 6 C -0.146 4.146 7 C -0.061 4.061 8 C -0.127 4.127 9 C -0.067 4.067 10 C -0.148 4.148 11 C 0.536 3.464 12 O -0.559 6.559 13 N -0.709 5.709 14 C 0.146 3.854 15 C -0.011 4.011 16 C -0.541 4.541 17 H 0.026 0.974 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.234 1.234 24 C 0.507 3.493 25 O -0.539 6.539 26 O -0.497 6.497 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.412 0.588 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.268 0.732 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 27.844 17.580 35.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.259 4.259 3 H 0.167 0.833 4 S 0.229 5.771 5 C -0.179 4.179 6 C -0.170 4.170 7 C -0.080 4.080 8 C -0.147 4.147 9 C -0.087 4.087 10 C -0.158 4.158 11 C 0.325 3.675 12 O -0.441 6.441 13 N -0.361 5.361 14 C 0.022 3.978 15 C -0.049 4.049 16 C -0.580 4.580 17 H 0.044 0.956 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.157 1.157 24 C 0.348 3.652 25 O -0.428 6.428 26 O -0.311 6.311 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.250 0.750 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -11.800 25.915 17.844 33.604 hybrid contribution 0.061 0.170 -0.380 0.421 sum -11.739 26.085 17.464 33.514 Atomic orbital electron populations 1.22034 0.87979 1.04061 1.05561 1.23652 1.03288 1.05495 0.93459 0.83311 1.88423 1.72168 1.22292 0.94213 1.22295 1.01567 0.98517 0.95562 1.21497 1.02014 0.91488 1.02021 1.21737 0.94580 0.99923 0.91809 1.21555 0.99184 0.95878 0.98130 1.21575 0.95162 0.93595 0.98412 1.19511 1.08285 0.94546 0.93463 1.18830 0.78308 0.87519 0.82839 1.90699 1.52789 1.53794 1.46811 1.45899 1.64626 1.18257 1.07272 1.21046 0.96912 0.82813 0.96982 1.19643 0.97835 0.95862 0.91522 1.21246 1.43128 1.00645 0.92940 0.95570 1.26127 0.94049 0.97297 1.01960 1.70079 1.46467 1.22645 1.19958 0.85507 0.80303 0.78803 0.77078 1.18880 1.21225 1.15676 1.22467 0.73510 0.84209 0.84968 1.90808 1.45397 1.20278 1.86355 1.84432 1.78872 1.48937 1.18906 0.89357 0.92305 0.87936 0.82780 0.81148 0.81623 0.83470 0.74985 0.93889 0.93846 0.94265 0.94438 0.92289 0.70445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.70 71.98 0.63 -1.18 16 2 C -0.13 -2.33 2.50 29.85 0.07 -2.25 16 3 H 0.15 1.74 6.83 -2.39 -0.02 1.72 16 4 S -0.02 -0.52 17.45 -56.49 -0.99 -1.50 16 5 C -0.06 -1.55 6.03 23.00 0.14 -1.41 16 6 C -0.15 -2.11 8.05 22.39 0.18 -1.93 16 7 C -0.06 -0.58 10.03 22.29 0.22 -0.36 16 8 C -0.13 -1.41 10.02 22.25 0.22 -1.19 16 9 C -0.07 -1.20 9.53 22.51 0.21 -0.98 16 10 C -0.15 -3.92 5.89 -19.97 -0.12 -4.04 16 11 C 0.54 19.05 7.75 86.65 0.67 19.72 16 12 O -0.56 -24.66 13.77 -4.05 -0.06 -24.72 16 13 N -0.71 -23.91 5.51 -466.41 -2.57 -26.48 16 14 C 0.15 6.27 5.61 86.38 0.48 6.76 16 15 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 16 C -0.54 -31.56 9.66 25.60 0.25 -31.31 16 17 H 0.03 1.72 7.99 -2.92 -0.02 1.70 16 18 C 0.00 0.15 5.47 84.66 0.46 0.62 16 19 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 20 Si 0.96 42.40 27.47 68.60 1.88 44.28 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.23 -9.05 6.54 99.48 0.65 -8.40 16 24 C 0.51 10.48 7.50 71.24 0.53 11.01 16 25 O -0.54 -16.43 16.80 21.97 0.37 -16.06 16 26 O -0.50 -6.05 13.42 -51.40 -0.69 -6.74 16 27 H 0.09 1.02 6.15 -2.39 -0.01 1.01 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.15 1.37 5.01 -2.91 -0.01 1.35 16 31 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 32 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.15 2.06 6.40 -2.91 -0.02 2.04 16 34 H 0.41 10.67 6.50 -92.71 -0.60 10.07 16 35 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 38 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.43 1.85 9.10 -74.06 -0.67 1.17 16 Total: -1.00 -86.86 349.77 2.11 -84.75 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.23 Total: 13.25 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.09 Total: -6.91 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.27 Total: -86.36 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.38 Total: -47.52 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -0.99 Total: -1.50 kcal Total: -86.86 2.11 -84.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833545251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.371 kcal (2) G-P(sol) polarization free energy of solvation -86.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds