Wall clock time and date at job start Tue Mar 31 2020 13:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.41617 * 2 1 4 4 C 1.54313 * 110.49213 * 122.73946 * 2 1 3 5 5 N 1.47073 * 109.96720 * 164.16382 * 4 2 1 6 6 C 1.34771 * 126.29863 * 150.90861 * 5 4 2 7 7 O 1.21275 * 120.00274 * 359.70992 * 6 5 4 8 8 C 1.50710 * 119.99635 * 179.71354 * 6 5 4 9 9 C 1.50691 * 109.46853 * 179.97438 * 8 6 5 10 10 C 1.37644 * 120.13117 * 264.72245 * 9 8 6 11 11 C 1.38609 * 120.24784 * 180.27943 * 10 9 8 12 12 C 1.38652 * 120.50710 * 359.97438 * 11 10 9 13 13 C 1.37603 * 120.24538 * 0.02562 * 12 11 10 14 14 C 1.40702 * 120.12892 * 85.00663 * 9 8 6 15 15 C 1.41399 * 120.23968 * 359.69512 * 14 9 8 16 16 H 1.07997 * 120.00152 * 334.09399 * 15 14 9 17 17 C 1.39947 * 119.99781 * 154.10068 * 15 14 9 18 18 N 1.30819 * 119.99909 * 343.60597 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 163.61272 * 17 15 14 20 20 H 1.48508 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47219 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.47311 * 239.99733 * 19 17 15 23 23 S 1.67007 * 107.39441 * 330.64153 * 5 4 2 24 24 O 1.42102 * 105.12809 * 119.15188 * 23 5 4 25 25 O 1.42097 * 105.13220 * 248.82474 * 23 5 4 26 26 C 1.55602 * 110.46611 * 237.50417 * 2 1 3 27 27 H 1.08991 * 109.47253 * 181.04323 * 1 2 3 28 28 H 1.09004 * 109.46709 * 301.04316 * 1 2 3 29 29 H 1.09004 * 109.47114 * 61.03996 * 1 2 3 30 30 H 1.09007 * 109.51000 * 43.98237 * 4 2 1 31 31 H 1.08995 * 109.34800 * 284.24704 * 4 2 1 32 32 H 1.09000 * 109.47085 * 59.99892 * 8 6 5 33 33 H 1.08995 * 109.47128 * 299.99786 * 8 6 5 34 34 H 1.07999 * 119.87091 * 0.25772 * 10 9 8 35 35 H 1.08004 * 119.74832 * 179.97438 * 11 10 9 36 36 H 1.07993 * 119.88182 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.12393 * 180.02562 * 13 12 11 38 38 H 0.97004 * 119.99812 * 180.02562 * 18 17 15 39 39 H 1.09006 * 111.16658 * 85.38821 * 26 2 1 40 40 H 1.08997 * 111.16689 * 321.11635 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0703 -0.7817 1.2158 5 7 3.4918 -1.1017 1.0160 6 6 4.4182 -1.2572 1.9824 7 8 4.1069 -1.1275 3.1473 8 6 5.8410 -1.5922 1.6154 9 6 6.6686 -1.7102 2.8692 10 6 7.3929 -0.6313 3.3230 11 6 8.1595 -0.7389 4.4728 12 6 8.2060 -1.9313 5.1788 13 6 7.4900 -3.0228 4.7436 14 6 6.7086 -2.9254 3.5772 15 6 5.9683 -4.0403 3.1207 16 1 5.0815 -3.8914 2.5225 17 6 6.3847 -5.3366 3.4442 18 7 7.6007 -5.5434 3.8799 19 14 5.2041 -6.7716 3.2537 20 1 3.8991 -6.2752 2.7476 21 1 5.7680 -7.7522 2.2916 22 1 5.0062 -7.4282 4.5709 23 16 3.7450 -1.2440 -0.6287 24 8 4.7007 -0.2411 -0.9449 25 8 4.0080 -2.6235 -0.8454 26 6 2.0741 -0.7832 -1.2296 27 1 -0.3633 -1.0274 0.0187 28 1 -0.3633 0.5300 0.8805 29 1 -0.3633 0.4976 -0.8992 30 1 1.5052 -1.7063 1.3345 31 1 1.9596 -0.1742 2.1140 32 1 6.2489 -0.8027 0.9842 33 1 5.8636 -2.5381 1.0744 34 1 7.3640 0.3024 2.7810 35 1 8.7251 0.1126 4.8214 36 1 8.8063 -2.0037 6.0736 37 1 7.5272 -3.9505 5.2953 38 1 7.8894 -6.4421 4.1038 39 1 2.1352 -0.1421 -2.1090 40 1 1.4705 -1.6681 -1.4311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835573445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:46 Heat of formation + Delta-G solvation = -85.252146 kcal Electronic energy + Delta-G solvation = -25835.046390 eV Core-core repulsion = 22127.749011 eV Total energy + Delta-G solvation = -3707.297379 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.66366 -37.80431 -37.21594 -36.92909 -36.02480 -33.65571 -33.59795 -31.71485 -29.44929 -28.38553 -27.56595 -25.84155 -24.82094 -21.91733 -21.38254 -20.90618 -19.73817 -18.66855 -17.46721 -17.17577 -17.09357 -16.08496 -15.72299 -15.44590 -15.15306 -14.89735 -14.48540 -14.18848 -13.94080 -13.65957 -13.42596 -13.33524 -12.97811 -12.67477 -12.53898 -12.23986 -12.09831 -11.99117 -11.77513 -11.62692 -11.52980 -11.35308 -11.17843 -11.05484 -10.96052 -10.75122 -10.66365 -10.35131 -9.78729 -9.61620 -9.46601 -9.35720 -9.13317 -7.31778 -7.28807 -6.71344 -4.32386 -0.09339 2.15862 2.81110 2.85832 2.99334 3.11555 3.18521 3.29923 3.34313 3.48303 3.90448 3.99033 4.13008 4.41253 4.47885 4.68872 4.86285 4.91761 5.05429 5.18280 5.34356 5.50155 5.53764 5.57476 5.71940 5.74050 5.94314 5.97207 6.30806 6.38800 6.52908 6.69333 6.89906 7.11904 7.31147 7.42937 7.66083 7.93130 8.08079 8.14440 8.24743 8.33366 8.67266 8.93399 9.02064 10.22830 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.005014 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.083069 B = 5583.470320 C = 6628.215688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.106 0.894 4 C 0.064 3.936 5 N -0.938 5.938 6 C 0.552 3.448 7 O -0.476 6.476 8 C -0.091 4.091 9 C -0.187 4.187 10 C -0.076 4.076 11 C -0.240 4.240 12 C -0.104 4.104 13 C -0.158 4.158 14 C 0.130 3.870 15 C -0.457 4.457 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.903 3.097 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.272 1.272 23 S 2.555 3.445 24 O -0.940 6.940 25 O -0.932 6.932 26 C -0.595 4.595 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.146 0.854 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 7.756 -10.081 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.124 0.876 4 C -0.061 4.061 5 N -0.786 5.786 6 C 0.341 3.659 7 O -0.344 6.344 8 C -0.131 4.131 9 C -0.189 4.189 10 C -0.095 4.095 11 C -0.259 4.259 12 C -0.122 4.122 13 C -0.177 4.177 14 C 0.127 3.873 15 C -0.486 4.486 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.727 3.273 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.197 1.197 23 S 2.650 3.350 24 O -0.929 6.929 25 O -0.922 6.922 26 C -0.726 4.726 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.164 0.836 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.523 7.332 -9.678 17.443 hybrid contribution -1.169 -0.525 -0.015 1.282 sum -13.693 6.806 -9.693 18.104 Atomic orbital electron populations 1.21657 0.91302 1.03241 1.03120 1.22282 0.99538 0.99948 0.89801 0.87572 1.22425 0.80538 1.02048 1.01044 1.56814 1.15837 1.78323 1.27597 1.21394 0.86451 0.73510 0.84520 1.90650 1.80485 1.44763 1.18515 1.20679 0.88222 1.03886 1.00313 1.18867 1.05734 0.96675 0.97668 1.20337 0.97096 0.95914 0.96123 1.20298 1.07913 0.97533 1.00168 1.20694 0.99331 0.93891 0.98327 1.21285 1.01271 0.97679 0.97485 1.17358 0.89647 0.90776 0.89498 1.19562 1.09832 0.90033 1.29209 0.90649 1.25880 0.94888 1.00590 0.92623 1.69827 1.15871 1.23604 1.32407 0.86340 0.81669 0.80532 0.78749 1.18339 1.19816 1.19693 1.07194 0.77639 0.75756 0.74416 1.93654 1.56659 1.60297 1.82323 1.93693 1.83213 1.31891 1.83360 1.31041 1.22428 1.11453 1.07669 0.91506 0.91165 0.91213 0.89174 0.87374 0.88701 0.87218 0.89433 0.89476 0.89447 0.86403 0.90934 0.83613 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.28 37.16 0.34 -0.32 16 2 C -0.10 -0.68 3.43 -88.54 -0.30 -0.99 16 3 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.06 0.70 5.91 -3.04 -0.02 0.68 16 5 N -0.94 -14.75 3.33 -59.20 -0.20 -14.95 16 6 C 0.55 11.50 7.49 -10.98 -0.08 11.42 16 7 O -0.48 -11.33 16.22 5.56 0.09 -11.24 16 8 C -0.09 -2.03 4.19 -29.03 -0.12 -2.15 16 9 C -0.19 -4.77 4.43 -103.91 -0.46 -5.23 16 10 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 11 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16 12 C -0.10 -2.56 10.02 -39.66 -0.40 -2.96 16 13 C -0.16 -4.29 8.68 -38.87 -0.34 -4.62 16 14 C 0.13 3.59 5.56 -106.82 -0.59 2.99 16 15 C -0.46 -12.56 8.14 -37.74 -0.31 -12.87 16 16 H 0.08 2.05 6.67 -52.49 -0.35 1.70 16 17 C 0.08 2.03 5.16 -17.34 -0.09 1.94 16 18 N -0.79 -20.90 10.97 55.55 0.61 -20.29 16 19 Si 0.90 19.60 29.59 -169.99 -5.03 14.57 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 S 2.55 34.50 5.33 -107.50 -0.57 33.93 16 24 O -0.94 -14.83 17.30 -57.41 -0.99 -15.83 16 25 O -0.93 -15.90 17.93 -57.41 -1.03 -16.93 16 26 C -0.60 -4.18 6.92 38.54 0.27 -3.91 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.11 1.21 7.88 -51.93 -0.41 0.80 16 32 H 0.09 1.89 7.36 -51.93 -0.38 1.51 16 33 H 0.11 2.49 6.87 -51.93 -0.36 2.14 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.26 6.22 -52.48 -0.33 2.94 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 39 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.15 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -35.20 345.23 -9.98 -45.18 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.18 Total: 4.66 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -2.88 Total: -24.31 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.41 Total: -35.24 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.93 Total: -43.99 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 16 Polarization: 34.50 SS G_CDS: -0.57 Total: 33.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.20 -9.98 -45.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835573445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.077 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds