Wall clock time and date at job start Tue Mar 31 2020 13:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.41617 * 2 1 4 4 C 1.54313 * 110.49213 * 122.73946 * 2 1 3 5 5 N 1.47073 * 109.96720 * 164.16382 * 4 2 1 6 6 C 1.34771 * 126.29863 * 150.90861 * 5 4 2 7 7 O 1.21275 * 120.00274 * 359.70992 * 6 5 4 8 8 C 1.50710 * 119.99635 * 179.71354 * 6 5 4 9 9 C 1.50691 * 109.46853 * 179.97438 * 8 6 5 10 10 C 1.37644 * 120.13117 * 264.72245 * 9 8 6 11 11 C 1.38609 * 120.24784 * 180.27943 * 10 9 8 12 12 C 1.38652 * 120.50710 * 359.97438 * 11 10 9 13 13 C 1.37603 * 120.24538 * 0.02562 * 12 11 10 14 14 C 1.40702 * 120.12892 * 85.00663 * 9 8 6 15 15 C 1.41399 * 120.23968 * 359.69512 * 14 9 8 16 16 H 1.07997 * 120.00152 * 334.09399 * 15 14 9 17 17 C 1.39947 * 119.99781 * 154.10068 * 15 14 9 18 18 N 1.30819 * 119.99909 * 343.60597 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 163.61272 * 17 15 14 20 20 H 1.48508 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47219 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.47311 * 239.99733 * 19 17 15 23 23 S 1.67007 * 107.39441 * 330.64153 * 5 4 2 24 24 O 1.42102 * 105.12809 * 119.15188 * 23 5 4 25 25 O 1.42097 * 105.13220 * 248.82474 * 23 5 4 26 26 C 1.55602 * 110.46611 * 237.50417 * 2 1 3 27 27 H 1.08991 * 109.47253 * 181.04323 * 1 2 3 28 28 H 1.09004 * 109.46709 * 301.04316 * 1 2 3 29 29 H 1.09004 * 109.47114 * 61.03996 * 1 2 3 30 30 H 1.09007 * 109.51000 * 43.98237 * 4 2 1 31 31 H 1.08995 * 109.34800 * 284.24704 * 4 2 1 32 32 H 1.09000 * 109.47085 * 59.99892 * 8 6 5 33 33 H 1.08995 * 109.47128 * 299.99786 * 8 6 5 34 34 H 1.07999 * 119.87091 * 0.25772 * 10 9 8 35 35 H 1.08004 * 119.74832 * 179.97438 * 11 10 9 36 36 H 1.07993 * 119.88182 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.12393 * 180.02562 * 13 12 11 38 38 H 0.97004 * 119.99812 * 180.02562 * 18 17 15 39 39 H 1.09006 * 111.16658 * 85.38821 * 26 2 1 40 40 H 1.08997 * 111.16689 * 321.11635 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0703 -0.7817 1.2158 5 7 3.4918 -1.1017 1.0160 6 6 4.4182 -1.2572 1.9824 7 8 4.1069 -1.1275 3.1473 8 6 5.8410 -1.5922 1.6154 9 6 6.6686 -1.7102 2.8692 10 6 7.3929 -0.6313 3.3230 11 6 8.1595 -0.7389 4.4728 12 6 8.2060 -1.9313 5.1788 13 6 7.4900 -3.0228 4.7436 14 6 6.7086 -2.9254 3.5772 15 6 5.9683 -4.0403 3.1207 16 1 5.0815 -3.8914 2.5225 17 6 6.3847 -5.3366 3.4442 18 7 7.6007 -5.5434 3.8799 19 14 5.2041 -6.7716 3.2537 20 1 3.8991 -6.2752 2.7476 21 1 5.7680 -7.7522 2.2916 22 1 5.0062 -7.4282 4.5709 23 16 3.7450 -1.2440 -0.6287 24 8 4.7007 -0.2411 -0.9449 25 8 4.0080 -2.6235 -0.8454 26 6 2.0741 -0.7832 -1.2296 27 1 -0.3633 -1.0274 0.0187 28 1 -0.3633 0.5300 0.8805 29 1 -0.3633 0.4976 -0.8992 30 1 1.5052 -1.7063 1.3345 31 1 1.9596 -0.1742 2.1140 32 1 6.2489 -0.8027 0.9842 33 1 5.8636 -2.5381 1.0744 34 1 7.3640 0.3024 2.7810 35 1 8.7251 0.1126 4.8214 36 1 8.8063 -2.0037 6.0736 37 1 7.5272 -3.9505 5.2953 38 1 7.8894 -6.4421 4.1038 39 1 2.1352 -0.1421 -2.1090 40 1 1.4705 -1.6681 -1.4311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835573445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:45 Heat of formation + Delta-G solvation = -110.291455 kcal Electronic energy + Delta-G solvation = -25836.132176 eV Core-core repulsion = 22127.749011 eV Total energy + Delta-G solvation = -3708.383165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18003 -39.40401 -38.37513 -38.19191 -37.17513 -35.57096 -34.82015 -33.49488 -31.43055 -29.35399 -28.72768 -27.34884 -26.46882 -23.29072 -22.88770 -22.16937 -21.41195 -19.88952 -19.15179 -18.68894 -18.34730 -17.29956 -17.28283 -16.85420 -16.38887 -16.27637 -15.97737 -15.69657 -15.47394 -15.36053 -14.52083 -14.41770 -14.10548 -13.88966 -13.64392 -13.51060 -13.44844 -13.25825 -13.22710 -13.01640 -12.91760 -12.87470 -12.77047 -12.56022 -12.16291 -12.15413 -12.10951 -11.57720 -11.41435 -11.34492 -11.22807 -11.08191 -10.98948 -9.30020 -9.27370 -8.66315 -6.37529 -1.07585 0.84650 1.01914 1.17436 1.24750 1.31219 1.45466 1.47993 2.17335 2.40820 2.45369 2.71672 3.10851 3.29199 3.40358 3.76106 3.81470 3.96052 4.15312 4.19211 4.29179 4.44758 4.47676 4.55115 4.57063 4.64566 4.67870 4.72342 4.90804 5.03649 5.11644 5.12601 5.28888 5.31322 5.42791 5.46114 5.69071 5.96725 6.07957 6.14941 6.34866 6.63244 6.68691 6.91400 7.01662 8.30673 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.005014 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.083069 B = 5583.470320 C = 6628.215688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.121 0.879 4 C 0.048 3.952 5 N -0.940 5.940 6 C 0.557 3.443 7 O -0.519 6.519 8 C -0.094 4.094 9 C -0.200 4.200 10 C -0.088 4.088 11 C -0.237 4.237 12 C -0.109 4.109 13 C -0.187 4.187 14 C 0.098 3.902 15 C -0.489 4.489 16 H 0.063 0.937 17 C 0.038 3.962 18 N -0.820 5.820 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.258 1.258 23 S 2.520 3.480 24 O -0.973 6.973 25 O -0.982 6.982 26 C -0.536 4.536 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.289 0.711 39 H 0.191 0.809 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.173 9.057 -11.748 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.139 0.861 4 C -0.075 4.075 5 N -0.784 5.784 6 C 0.346 3.654 7 O -0.390 6.390 8 C -0.134 4.134 9 C -0.201 4.201 10 C -0.106 4.106 11 C -0.256 4.256 12 C -0.128 4.128 13 C -0.207 4.207 14 C 0.096 3.904 15 C -0.518 4.518 16 H 0.081 0.919 17 C -0.178 4.178 18 N -0.446 5.446 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.184 1.184 22 H -0.182 1.182 23 S 2.623 3.377 24 O -0.963 6.963 25 O -0.972 6.972 26 C -0.672 4.672 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.209 0.791 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.158 8.630 -11.354 20.812 hybrid contribution -0.404 -0.772 0.419 0.967 sum -15.562 7.858 -10.936 20.579 Atomic orbital electron populations 1.21732 0.88597 1.04271 1.04616 1.22425 1.01261 0.99815 0.87201 0.86135 1.22932 0.77893 1.03378 1.03299 1.56567 1.17282 1.77002 1.27589 1.20828 0.86800 0.73101 0.84633 1.90615 1.81309 1.46921 1.20193 1.20616 0.89902 1.03729 0.99122 1.19269 1.05962 0.96524 0.98389 1.20737 0.96615 0.96612 0.96629 1.20729 1.07218 0.98128 0.99500 1.21009 0.98929 0.93567 0.99248 1.21299 1.03169 0.98191 0.98016 1.17716 0.90502 0.91938 0.90282 1.19652 1.10103 0.91344 1.30718 0.91878 1.26663 0.96396 1.02683 0.92020 1.69861 1.17093 1.24760 1.32855 0.85361 0.78988 0.77239 0.79451 1.18907 1.18392 1.18229 1.08143 0.81190 0.74634 0.73777 1.93603 1.60532 1.60131 1.82046 1.93632 1.85759 1.34408 1.83371 1.30882 1.14111 1.13432 1.08792 0.90752 0.90698 0.88826 0.87972 0.87957 0.87115 0.88809 0.86687 0.85987 0.86838 0.87954 0.90038 0.79139 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 9.28 71.98 0.67 0.07 16 2 C -0.09 -0.86 3.43 -9.45 -0.03 -0.90 16 3 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.05 0.98 5.91 86.72 0.51 1.49 16 5 N -0.94 -29.85 3.33 -459.61 -1.53 -31.38 16 6 C 0.56 24.25 7.49 87.66 0.66 24.91 16 7 O -0.52 -25.85 16.22 -3.01 -0.05 -25.90 16 8 C -0.09 -4.41 4.19 29.10 0.12 -4.29 16 9 C -0.20 -10.58 4.43 -19.41 -0.09 -10.67 16 10 C -0.09 -4.24 9.66 22.22 0.21 -4.03 16 11 C -0.24 -11.06 10.05 22.46 0.23 -10.83 16 12 C -0.11 -5.45 10.02 22.22 0.22 -5.22 16 13 C -0.19 -10.62 8.68 22.73 0.20 -10.42 16 14 C 0.10 5.70 5.56 -21.29 -0.12 5.59 16 15 C -0.49 -28.46 8.14 23.46 0.19 -28.27 16 16 H 0.06 3.69 6.67 -2.91 -0.02 3.67 16 17 C 0.04 2.03 5.16 85.26 0.44 2.47 16 18 N -0.82 -44.99 10.97 21.83 0.24 -44.75 16 19 Si 0.97 41.38 29.59 68.60 2.03 43.41 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 S 2.52 66.71 5.33 -56.49 -0.30 66.41 16 24 O -0.97 -30.79 17.30 -127.77 -2.21 -33.00 16 25 O -0.98 -34.58 17.93 -127.77 -2.29 -36.87 16 26 C -0.54 -4.90 6.92 72.88 0.50 -4.40 16 27 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.10 1.82 8.08 -2.38 -0.02 1.80 16 31 H 0.10 2.23 7.88 -2.39 -0.02 2.21 16 32 H 0.11 4.64 7.36 -2.39 -0.02 4.63 16 33 H 0.09 4.64 6.87 -2.39 -0.02 4.62 16 34 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.10 5.99 6.22 -2.91 -0.02 5.97 16 38 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 39 H 0.19 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.18 0.75 8.08 -2.39 -0.02 0.73 16 Total: -1.00 -83.89 345.23 0.66 -83.22 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.06 Total: 23.35 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 3.72 Total: -44.51 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.29 Total: -76.13 kcal Atomic # 8 Polarization: -91.21 SS G_CDS: -4.55 Total: -95.76 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 66.71 SS G_CDS: -0.30 Total: 66.41 kcal Total: -83.89 0.66 -83.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835573445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.067 kcal (2) G-P(sol) polarization free energy of solvation -83.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds