Wall clock time and date at job start Tue Mar 31 2020 14:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99887 * 2 1 4 4 C 1.34778 * 119.99756 * 179.71965 * 2 1 3 5 5 O 1.21279 * 120.00336 * 3.60601 * 4 2 1 6 6 C 1.50710 * 119.99609 * 183.60485 * 4 2 1 7 7 H 1.08996 * 109.46884 * 42.54035 * 6 4 2 8 8 O 1.45202 * 109.46883 * 162.53874 * 6 4 2 9 9 C 1.34227 * 116.99836 * 269.99783 * 8 6 4 10 10 O 1.20821 * 120.00349 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99905 * 180.02562 * 9 8 6 12 12 S 1.81001 * 109.47325 * 180.02562 * 11 9 8 13 13 C 1.76195 * 100.00081 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99867 * 0.02562 * 13 12 11 15 15 C 1.38794 * 120.00256 * 180.02562 * 13 12 11 16 16 N 1.31634 * 120.00093 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99641 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46909 * 90.00311 * 17 15 13 19 19 H 1.48503 * 109.46836 * 210.00256 * 17 15 13 20 20 H 1.48500 * 109.47397 * 330.00224 * 17 15 13 21 21 C 1.50695 * 109.46718 * 282.53710 * 6 4 2 22 22 C 1.38232 * 120.00507 * 281.68794 * 21 6 4 23 23 C 1.38235 * 120.00323 * 179.79128 * 22 21 6 24 24 C 1.38238 * 119.99564 * 0.44504 * 23 22 21 25 25 C 1.38231 * 120.00110 * 359.80985 * 24 23 22 26 26 C 1.38235 * 120.00262 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46991 * 90.00373 * 1 2 3 28 28 H 1.09007 * 109.47294 * 210.00157 * 1 2 3 29 29 H 1.08998 * 109.47628 * 329.99993 * 1 2 3 30 30 H 1.09000 * 109.47055 * 5.15686 * 3 2 1 31 31 H 1.09003 * 109.47016 * 125.16002 * 3 2 1 32 32 H 1.08999 * 109.46447 * 245.15510 * 3 2 1 33 33 H 1.09001 * 109.47222 * 300.00504 * 11 9 8 34 34 H 1.09006 * 109.47075 * 59.99738 * 11 9 8 35 35 H 0.97005 * 119.99232 * 180.02562 * 16 15 13 36 36 H 1.08002 * 119.99731 * 0.02562 * 22 21 6 37 37 H 1.07997 * 119.99777 * 180.27332 * 23 22 21 38 38 H 1.08002 * 119.99274 * 179.83032 * 24 23 22 39 39 H 1.07999 * 119.99641 * 179.97438 * 25 24 23 40 40 H 1.07994 * 119.99982 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 0.0057 5 8 1.5342 -2.2168 -0.0552 6 6 3.6437 -1.1681 0.0878 7 1 3.9679 -0.4298 0.8212 8 8 4.1057 -2.4847 0.4895 9 6 4.2372 -2.7088 1.8064 10 8 3.9745 -1.8340 2.5973 11 6 4.7125 -4.0516 2.2985 12 16 4.7844 -4.0406 4.1070 13 6 5.3533 -5.6821 4.4006 14 1 5.5437 -6.3445 3.5691 15 6 5.5570 -6.1239 5.7005 16 7 5.9825 -7.3501 5.9198 17 14 5.2285 -4.9779 7.1387 18 1 3.8164 -5.1232 7.5748 19 1 6.1325 -5.3249 8.2646 20 1 5.4754 -3.5747 6.7201 21 6 4.2204 -0.8232 -1.2611 22 6 4.2758 -1.7824 -2.2549 23 6 4.8009 -1.4648 -3.4936 24 6 5.2790 -0.1905 -3.7354 25 6 5.2285 0.7672 -2.7399 26 6 4.6993 0.4508 -1.5027 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.4927 2.0952 0.0924 31 1 2.8916 1.2875 0.8402 32 1 2.7530 1.3674 -0.9326 33 1 4.0202 -4.8257 1.9674 34 1 5.7049 -4.2555 1.8962 35 1 6.1245 -7.6589 6.8284 36 1 3.9053 -2.7789 -2.0648 37 1 4.8401 -2.2131 -4.2714 38 1 5.6918 0.0568 -4.7024 39 1 5.6024 1.7626 -2.9288 40 1 4.6602 1.1990 -0.7248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:07 Heat of formation + Delta-G solvation = -80.453523 kcal Electronic energy + Delta-G solvation = -24726.839091 eV Core-core repulsion = 21019.749796 eV Total energy + Delta-G solvation = -3707.089295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12569 -39.54021 -39.05444 -36.36055 -35.74563 -32.74185 -32.47692 -31.26781 -29.90543 -28.74211 -27.60753 -25.73361 -25.51540 -23.03340 -22.13516 -21.36763 -19.57081 -18.07692 -17.89697 -17.43520 -17.20128 -16.36059 -16.11130 -15.67786 -15.46979 -15.18172 -15.04087 -14.74792 -14.06018 -13.85973 -13.78823 -13.63478 -13.18992 -13.02404 -12.94273 -12.86861 -12.74994 -12.55172 -12.26624 -12.18022 -11.53107 -11.33055 -11.31683 -11.23615 -11.04203 -10.73372 -10.31239 -9.99305 -9.86971 -9.24346 -9.05465 -9.04127 -8.94426 -8.61048 -7.00862 -6.31987 -4.06123 0.87910 1.09490 2.16893 2.34067 2.46918 2.76189 3.09903 3.30442 3.44572 3.46052 3.54521 4.14481 4.29041 4.31341 4.48995 4.67645 4.70188 4.71579 4.77265 4.84006 4.98819 5.05009 5.06761 5.12359 5.18255 5.29850 5.31590 5.34589 5.56126 5.57465 5.67688 5.74195 5.97721 6.08070 6.12105 6.19252 6.21298 6.45130 6.63826 6.96439 7.82784 7.91016 7.98016 8.40166 9.12996 10.77122 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003226 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.767224 B = 8678.703554 C = 9505.213113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.615 5.615 3 C 0.065 3.935 4 C 0.509 3.491 5 O -0.514 6.514 6 C 0.117 3.883 7 H 0.115 0.885 8 O -0.325 6.325 9 C 0.482 3.518 10 O -0.489 6.489 11 C -0.097 4.097 12 S -0.138 6.138 13 C -0.522 4.522 14 H 0.092 0.908 15 C 0.098 3.902 16 N -0.877 5.877 17 Si 0.856 3.144 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.236 1.236 21 C -0.091 4.091 22 C -0.081 4.081 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.104 4.104 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.272 0.728 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 20.384 -19.308 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.351 5.351 3 C -0.078 4.078 4 C 0.295 3.705 5 O -0.388 6.388 6 C 0.057 3.943 7 H 0.133 0.867 8 O -0.241 6.241 9 C 0.323 3.677 10 O -0.375 6.375 11 C -0.245 4.245 12 S 0.088 5.912 13 C -0.669 4.669 14 H 0.110 0.890 15 C -0.112 4.112 16 N -0.513 5.513 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.160 1.160 21 C -0.092 4.092 22 C -0.099 4.099 23 C -0.139 4.139 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.122 4.122 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.645 20.768 -18.239 28.211 hybrid contribution 0.169 -0.582 -0.045 0.608 sum -5.476 20.186 -18.284 27.781 Atomic orbital electron populations 1.21706 0.78542 1.03454 1.01907 1.47607 1.07273 1.06068 1.74175 1.22219 0.97928 0.85284 1.02389 1.20614 0.89475 0.83856 0.76541 1.90744 1.69456 1.30797 1.47833 1.21108 0.91044 0.86288 0.95821 0.86701 1.86674 1.77269 1.33062 1.27114 1.23446 0.73855 0.90573 0.79792 1.90643 1.45899 1.45537 1.55399 1.23012 1.05697 0.93093 1.02693 1.84760 1.88537 1.21441 0.96470 1.22264 1.51759 0.95670 0.97231 0.88982 1.24688 0.93270 0.94912 0.98286 1.69937 1.43525 1.15890 1.21963 0.86751 0.79423 0.83241 0.82517 1.19118 1.19771 1.15983 1.19231 1.01845 0.95031 0.93082 1.21160 0.96836 0.99621 0.92247 1.21222 0.98782 0.96895 0.96953 1.21264 0.98767 0.93470 0.99282 1.21084 1.00024 0.99794 0.93127 1.21031 0.97910 0.95373 0.97927 0.92601 0.90366 0.90936 0.89963 0.91454 0.91188 0.86850 0.86919 0.91820 0.84885 0.85506 0.85765 0.85474 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.40 59.85 0.62 1.43 16 2 N -0.62 -6.93 3.27 -189.51 -0.62 -7.55 16 3 C 0.06 0.47 8.89 59.85 0.53 1.00 16 4 C 0.51 7.66 6.89 -10.98 -0.08 7.58 16 5 O -0.51 -9.66 16.20 -13.43 -0.22 -9.87 16 6 C 0.12 1.64 1.90 -29.03 -0.06 1.59 16 7 H 0.12 1.53 5.79 -51.93 -0.30 1.22 16 8 O -0.32 -5.54 8.87 -45.71 -0.41 -5.94 16 9 C 0.48 9.39 7.94 36.01 0.29 9.68 16 10 O -0.49 -10.40 15.08 -18.75 -0.28 -10.68 16 11 C -0.10 -2.00 6.27 36.01 0.23 -1.77 16 12 S -0.14 -3.51 18.55 -107.50 -1.99 -5.51 16 13 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 14 H 0.09 2.77 8.03 -52.48 -0.42 2.35 16 15 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 16 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 17 Si 0.86 21.60 27.74 -169.99 -4.71 16.88 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 21 C -0.09 -1.05 4.68 -104.63 -0.49 -1.54 16 22 C -0.08 -0.93 9.34 -39.58 -0.37 -1.30 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 24 C -0.11 -0.84 10.05 -39.58 -0.40 -1.24 16 25 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 26 C -0.10 -0.90 7.40 -39.58 -0.29 -1.19 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.89 7.47 -51.92 -0.39 0.51 16 29 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.08 0.39 7.77 -51.93 -0.40 -0.02 16 31 H 0.07 0.48 7.10 -51.93 -0.37 0.11 16 32 H 0.07 0.44 5.15 -51.93 -0.27 0.18 16 33 H 0.11 2.25 8.14 -51.91 -0.42 1.83 16 34 H 0.11 2.12 8.14 -51.91 -0.42 1.70 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.13 1.66 7.83 -52.49 -0.41 1.25 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.82 6.87 -52.49 -0.36 0.46 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -35.92 354.83 -7.73 -43.65 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.02 Total: -0.11 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.60 Total: -0.56 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.15 Total: -33.21 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.91 Total: -26.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.92 -7.73 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.800 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds