Wall clock time and date at job start Tue Mar 31 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99887 * 2 1 4 4 C 1.34778 * 119.99756 * 179.71965 * 2 1 3 5 5 O 1.21279 * 120.00336 * 3.60601 * 4 2 1 6 6 C 1.50710 * 119.99609 * 183.60485 * 4 2 1 7 7 H 1.08996 * 109.46884 * 42.54035 * 6 4 2 8 8 O 1.45202 * 109.46883 * 162.53874 * 6 4 2 9 9 C 1.34227 * 116.99836 * 269.99783 * 8 6 4 10 10 O 1.20821 * 120.00349 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99905 * 180.02562 * 9 8 6 12 12 S 1.81001 * 109.47325 * 180.02562 * 11 9 8 13 13 C 1.76195 * 100.00081 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99867 * 0.02562 * 13 12 11 15 15 C 1.38794 * 120.00256 * 180.02562 * 13 12 11 16 16 N 1.31634 * 120.00093 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99641 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46909 * 90.00311 * 17 15 13 19 19 H 1.48503 * 109.46836 * 210.00256 * 17 15 13 20 20 H 1.48500 * 109.47397 * 330.00224 * 17 15 13 21 21 C 1.50695 * 109.46718 * 282.53710 * 6 4 2 22 22 C 1.38232 * 120.00507 * 281.68794 * 21 6 4 23 23 C 1.38235 * 120.00323 * 179.79128 * 22 21 6 24 24 C 1.38238 * 119.99564 * 0.44504 * 23 22 21 25 25 C 1.38231 * 120.00110 * 359.80985 * 24 23 22 26 26 C 1.38235 * 120.00262 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46991 * 90.00373 * 1 2 3 28 28 H 1.09007 * 109.47294 * 210.00157 * 1 2 3 29 29 H 1.08998 * 109.47628 * 329.99993 * 1 2 3 30 30 H 1.09000 * 109.47055 * 5.15686 * 3 2 1 31 31 H 1.09003 * 109.47016 * 125.16002 * 3 2 1 32 32 H 1.08999 * 109.46447 * 245.15510 * 3 2 1 33 33 H 1.09001 * 109.47222 * 300.00504 * 11 9 8 34 34 H 1.09006 * 109.47075 * 59.99738 * 11 9 8 35 35 H 0.97005 * 119.99232 * 180.02562 * 16 15 13 36 36 H 1.08002 * 119.99731 * 0.02562 * 22 21 6 37 37 H 1.07997 * 119.99777 * 180.27332 * 23 22 21 38 38 H 1.08002 * 119.99274 * 179.83032 * 24 23 22 39 39 H 1.07999 * 119.99641 * 179.97438 * 25 24 23 40 40 H 1.07994 * 119.99982 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 0.0057 5 8 1.5342 -2.2168 -0.0552 6 6 3.6437 -1.1681 0.0878 7 1 3.9679 -0.4298 0.8212 8 8 4.1057 -2.4847 0.4895 9 6 4.2372 -2.7088 1.8064 10 8 3.9745 -1.8340 2.5973 11 6 4.7125 -4.0516 2.2985 12 16 4.7844 -4.0406 4.1070 13 6 5.3533 -5.6821 4.4006 14 1 5.5437 -6.3445 3.5691 15 6 5.5570 -6.1239 5.7005 16 7 5.9825 -7.3501 5.9198 17 14 5.2285 -4.9779 7.1387 18 1 3.8164 -5.1232 7.5748 19 1 6.1325 -5.3249 8.2646 20 1 5.4754 -3.5747 6.7201 21 6 4.2204 -0.8232 -1.2611 22 6 4.2758 -1.7824 -2.2549 23 6 4.8009 -1.4648 -3.4936 24 6 5.2790 -0.1905 -3.7354 25 6 5.2285 0.7672 -2.7399 26 6 4.6993 0.4508 -1.5027 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.4927 2.0952 0.0924 31 1 2.8916 1.2875 0.8402 32 1 2.7530 1.3674 -0.9326 33 1 4.0202 -4.8257 1.9674 34 1 5.7049 -4.2555 1.8962 35 1 6.1245 -7.6589 6.8284 36 1 3.9053 -2.7789 -2.0648 37 1 4.8401 -2.2131 -4.2714 38 1 5.6918 0.0568 -4.7024 39 1 5.6024 1.7626 -2.9288 40 1 4.6602 1.1990 -0.7248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:06 Heat of formation + Delta-G solvation = -102.520825 kcal Electronic energy + Delta-G solvation = -24727.796001 eV Core-core repulsion = 21019.749796 eV Total energy + Delta-G solvation = -3708.046205 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33132 -40.79201 -39.86718 -37.73954 -36.76900 -34.71958 -33.66420 -31.95213 -31.45086 -29.54515 -28.44864 -27.92110 -26.46218 -23.82090 -22.92409 -22.68648 -20.64532 -20.03158 -19.01558 -18.73175 -18.33572 -17.43428 -17.26392 -17.14887 -16.74780 -16.57877 -16.09761 -15.95284 -15.52967 -15.00126 -14.91695 -14.70131 -14.38439 -14.18376 -14.06748 -13.85801 -13.63144 -13.55917 -13.39825 -13.16856 -13.05505 -12.93124 -12.83439 -12.79041 -12.19310 -11.94671 -11.94180 -11.80998 -11.21099 -11.10962 -10.69634 -9.97972 -9.82227 -9.76835 -9.10889 -8.54917 -6.29615 0.12223 0.41893 0.66086 0.88624 1.24389 1.27727 1.30562 1.46319 1.62431 1.96891 2.21704 2.58450 2.75958 2.82971 3.20115 3.38090 3.57643 3.62923 4.01059 4.04669 4.09269 4.15524 4.25080 4.30816 4.32367 4.40478 4.53961 4.60345 4.64503 4.79256 4.81972 4.87555 4.96083 5.08996 5.33057 5.44376 5.52002 5.55583 5.67207 5.98757 6.03007 6.08697 6.41334 6.83069 6.88268 8.57700 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003226 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.767224 B = 8678.703554 C = 9505.213113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.610 5.610 3 C 0.054 3.946 4 C 0.498 3.502 5 O -0.569 6.569 6 C 0.115 3.885 7 H 0.124 0.876 8 O -0.327 6.327 9 C 0.490 3.510 10 O -0.510 6.510 11 C -0.090 4.090 12 S -0.151 6.151 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.048 3.952 16 N -0.914 5.914 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.255 1.255 20 H -0.232 1.232 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.128 4.128 24 C -0.105 4.105 25 C -0.115 4.115 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.279 0.721 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 24.213 -20.418 32.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.343 5.343 3 C -0.087 4.087 4 C 0.284 3.716 5 O -0.448 6.448 6 C 0.057 3.943 7 H 0.142 0.858 8 O -0.242 6.242 9 C 0.332 3.668 10 O -0.397 6.397 11 C -0.238 4.238 12 S 0.075 5.925 13 C -0.683 4.683 14 H 0.082 0.918 15 C -0.158 4.158 16 N -0.552 5.552 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.179 1.179 20 H -0.156 1.156 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.145 4.145 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.120 4.120 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.294 24.646 -19.376 31.794 hybrid contribution 0.043 -1.690 0.063 1.692 sum -5.251 22.956 -19.313 30.456 Atomic orbital electron populations 1.21884 0.77553 1.03830 1.02832 1.47800 1.08204 1.06355 1.71968 1.22553 0.98807 0.84116 1.03185 1.20911 0.89949 0.84336 0.76357 1.90708 1.70396 1.32829 1.50884 1.21428 0.90879 0.84442 0.97583 0.85842 1.86633 1.76917 1.35447 1.25252 1.23028 0.73453 0.89704 0.80576 1.90620 1.46973 1.46013 1.56117 1.22939 1.07116 0.94495 0.99297 1.84515 1.88343 1.18787 1.00850 1.22408 1.51862 0.97222 0.96805 0.91840 1.25574 0.92920 0.96405 1.00918 1.70018 1.44453 1.17566 1.23118 0.85871 0.79710 0.81278 0.79536 1.18679 1.17888 1.15600 1.19199 1.03799 0.96557 0.91592 1.21120 0.98706 0.98902 0.93870 1.21427 0.98569 0.98343 0.96204 1.21675 0.97346 0.92542 1.00712 1.21528 0.98459 1.01214 0.92090 1.21318 0.96936 0.94398 0.99332 0.91424 0.93151 0.87327 0.86706 0.91194 0.89888 0.86404 0.85165 0.91142 0.87497 0.84208 0.82783 0.81968 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.40 127.77 1.33 2.75 16 2 N -0.61 -13.05 3.27 -871.87 -2.85 -15.91 16 3 C 0.05 0.62 8.89 127.77 1.14 1.76 16 4 C 0.50 15.24 6.89 87.66 0.60 15.84 16 5 O -0.57 -22.59 16.20 15.12 0.25 -22.34 16 6 C 0.12 3.25 1.90 29.10 0.06 3.30 16 7 H 0.12 3.19 5.79 -2.39 -0.01 3.18 16 8 O -0.33 -11.46 8.87 -45.21 -0.40 -11.86 16 9 C 0.49 19.37 7.94 71.24 0.57 19.94 16 10 O -0.51 -21.71 15.08 21.98 0.33 -21.37 16 11 C -0.09 -3.79 6.27 71.24 0.45 -3.34 16 12 S -0.15 -7.74 18.55 -56.49 -1.05 -8.79 16 13 C -0.54 -31.63 10.04 67.95 0.68 -30.94 16 14 H 0.06 3.98 8.03 -2.91 -0.02 3.96 16 15 C 0.05 2.81 5.50 84.86 0.47 3.28 16 16 N -0.91 -55.96 13.97 21.65 0.30 -55.66 16 17 Si 0.91 44.50 27.74 68.60 1.90 46.40 16 18 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.25 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.23 -11.09 6.74 99.48 0.67 -10.42 16 21 C -0.11 -2.47 4.68 -19.87 -0.09 -2.56 16 22 C -0.11 -2.52 9.34 22.27 0.21 -2.31 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 24 C -0.11 -1.25 10.05 22.27 0.22 -1.02 16 25 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 26 C -0.10 -1.46 7.40 22.27 0.16 -1.30 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.19 7.47 -2.38 -0.02 1.17 16 29 H 0.11 1.11 7.88 -2.39 -0.02 1.09 16 30 H 0.11 0.59 7.77 -2.39 -0.02 0.57 16 31 H 0.07 0.81 7.10 -2.39 -0.02 0.79 16 32 H 0.08 0.76 5.15 -2.39 -0.01 0.75 16 33 H 0.12 4.83 8.14 -2.40 -0.02 4.81 16 34 H 0.13 4.97 8.14 -2.39 -0.02 4.95 16 35 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 36 H 0.11 2.95 7.83 -2.91 -0.02 2.93 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.15 1.36 6.87 -2.91 -0.02 1.34 16 Total: -1.00 -81.03 354.83 5.74 -75.30 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.24 Total: 2.47 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -2.55 Total: -71.56 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: 0.18 Total: -55.58 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.05 Total: -8.79 kcal Total: -81.03 5.74 -75.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.224 kcal (2) G-P(sol) polarization free energy of solvation -81.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds