Wall clock time and date at job start Tue Mar 31 2020 13:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46644 * 2 1 4 4 C 1.46501 * 120.00511 * 269.99852 * 3 2 1 5 5 C 1.50694 * 109.47397 * 270.00678 * 4 3 2 6 6 H 1.07999 * 119.99982 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00314 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99836 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47020 * 59.99902 * 9 7 5 11 11 H 1.48502 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47107 * 300.00551 * 9 7 5 13 13 C 1.34774 * 119.99981 * 90.00555 * 3 2 1 14 14 O 1.21277 * 120.00685 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99824 * 359.97438 * 13 3 2 16 16 O 1.42899 * 109.47053 * 180.02562 * 15 13 3 17 17 C 1.34985 * 116.99950 * 180.02562 * 16 15 13 18 18 O 1.21694 * 119.99762 * 359.97438 * 17 16 15 19 19 C 1.41398 * 119.99867 * 180.02562 * 17 16 15 20 20 C 1.35372 * 120.00108 * 173.18031 * 19 17 16 21 21 C 1.46636 * 119.99682 * 349.11712 * 20 19 17 22 22 C 1.44543 * 123.51037 * 317.15536 * 21 20 19 23 23 C 1.32723 * 113.09738 * 179.83336 * 22 21 20 24 24 S 1.75489 * 110.64868 * 0.41608 * 23 22 21 25 25 C 1.36346 * 123.50426 * 137.44644 * 21 20 19 26 26 H 1.08999 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46986 * 299.99696 * 1 2 3 28 28 H 1.08998 * 109.47259 * 59.99684 * 1 2 3 29 29 H 1.08999 * 109.46738 * 240.00505 * 2 1 3 30 30 H 1.08998 * 109.47259 * 120.00315 * 2 1 3 31 31 H 1.09007 * 109.46401 * 30.00594 * 4 3 2 32 32 H 1.08997 * 109.47333 * 149.99801 * 4 3 2 33 33 H 0.96995 * 119.99824 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47292 * 60.00309 * 15 13 3 35 35 H 1.08997 * 109.47533 * 300.00144 * 15 13 3 36 36 H 1.08004 * 119.99909 * 352.90131 * 19 17 16 37 37 H 1.07994 * 120.00392 * 169.11692 * 20 19 17 38 38 H 1.08007 * 123.45025 * 0.02562 * 22 21 20 39 39 H 1.08004 * 124.67764 * 180.19058 * 23 22 21 40 40 H 1.07995 * 124.61076 * 359.97209 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3428 1.2311 -1.0959 7 6 4.1490 2.3899 -2.8779 8 7 3.3489 3.1261 -3.6180 9 14 5.9133 2.0971 -3.4169 10 1 6.1416 0.6404 -3.5938 11 1 6.1607 2.7972 -4.7030 12 1 6.8406 2.6213 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3005 2.1819 3.5584 17 6 2.1286 1.6954 4.8058 18 8 1.7265 0.5579 4.9651 19 6 2.4148 2.5078 5.9271 20 6 2.1134 2.0724 7.1730 21 6 1.2813 0.8781 7.3509 22 6 0.0939 0.6095 6.5717 23 6 -0.4986 -0.5313 6.9021 24 16 0.3724 -1.3275 8.2009 25 6 1.5441 -0.0917 8.2726 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5815 1.6879 -2.0283 32 1 2.0953 3.1412 -1.1383 33 1 3.6749 3.5167 -4.4438 34 1 2.6213 0.4186 2.5302 35 1 0.9434 1.0124 2.5299 36 1 2.8780 3.4737 5.7900 37 1 2.4856 2.6046 8.0358 38 1 -0.2719 1.2680 5.7977 39 1 -1.3954 -0.9147 6.4383 40 1 2.3807 -0.0786 8.9553 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918900987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:06 Heat of formation + Delta-G solvation = -53.969283 kcal Electronic energy + Delta-G solvation = -24420.455892 eV Core-core repulsion = 20714.515040 eV Total energy + Delta-G solvation = -3705.940852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81410 -39.11045 -37.96889 -36.17159 -35.27764 -33.37636 -32.83176 -30.18562 -29.85224 -29.04626 -26.72338 -25.06034 -23.21189 -23.04555 -22.38179 -20.69331 -19.10182 -18.59933 -18.05698 -17.46759 -16.79231 -16.44951 -16.27706 -16.07621 -15.42669 -14.67507 -14.41797 -14.32340 -14.17123 -13.47267 -13.39559 -13.28133 -13.01521 -12.97932 -12.64613 -12.51823 -12.27087 -12.07728 -12.03773 -11.62330 -11.22738 -11.00777 -10.94668 -10.83477 -10.58190 -10.50312 -10.44834 -10.14645 -10.10956 -9.67521 -9.00626 -8.97082 -8.44207 -8.09876 -7.74405 -6.05536 -4.10470 0.34712 1.09960 1.51221 1.87816 2.61792 2.70340 2.96640 3.27567 3.32157 3.36382 3.40662 3.96181 4.43945 4.48581 4.66301 4.83953 4.92751 5.07849 5.14079 5.21587 5.24859 5.29019 5.32188 5.39566 5.55470 5.59241 5.73506 5.84330 5.91256 5.99826 6.07913 6.19230 6.23962 6.43669 6.46090 7.00670 7.40104 7.48044 7.78982 7.90751 8.20827 8.31196 8.85499 9.00462 9.54529 11.02618 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002571 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.066148 B =10888.654384 C =11416.348740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.051 3.949 16 O -0.324 6.324 17 C 0.488 3.512 18 O -0.497 6.497 19 C -0.196 4.196 20 C 0.019 3.981 21 C -0.093 4.093 22 C -0.062 4.062 23 C -0.239 4.239 24 S 0.143 5.857 25 C -0.229 4.229 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.162 0.838 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.830 -8.033 23.524 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.239 6.239 17 C 0.336 3.664 18 O -0.388 6.388 19 C -0.216 4.216 20 C -0.002 4.002 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.373 4.373 24 S 0.408 5.592 25 C -0.365 4.365 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.179 0.821 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.981 -9.005 24.115 26.951 hybrid contribution 1.293 1.007 -1.385 2.146 sum -6.688 -7.999 22.730 25.008 Atomic orbital electron populations 1.22228 0.96578 1.01629 1.02368 1.21496 0.93717 0.83988 1.02985 1.48206 1.63861 1.13379 1.07170 1.19318 0.96431 0.93697 0.77607 1.21393 0.96875 1.32156 1.06343 0.92461 1.24930 0.97911 0.94854 0.96340 1.69922 1.35763 1.33293 1.14371 0.86545 0.84721 0.78256 0.77829 1.20236 1.21151 1.20137 1.19752 0.79651 0.87127 0.84342 1.90711 1.44499 1.17564 1.86756 1.22514 1.02380 0.92943 0.84866 1.86297 1.78796 1.44498 1.14306 1.20122 0.75527 0.86828 0.83969 1.90946 1.41964 1.19708 1.86206 1.21417 1.07887 1.02002 0.90266 1.22189 0.89733 0.91672 0.96568 1.19317 0.97305 0.96667 0.97520 1.21002 0.93312 0.97142 0.97577 1.25220 1.06532 1.00602 1.04969 1.82890 1.18518 1.23806 1.33996 1.25397 1.05781 1.00426 1.04936 0.91950 0.93170 0.91811 0.89478 0.91766 0.94666 0.93728 0.92616 0.89108 0.89219 0.83288 0.83554 0.84628 0.82094 0.81855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.58 2.46 -175.06 -0.43 -13.01 16 4 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.51 10.90 7.75 -10.99 -0.09 10.82 16 14 O -0.52 -13.59 16.08 -14.35 -0.23 -13.82 16 15 C 0.05 0.85 4.41 36.01 0.16 1.01 16 16 O -0.32 -5.48 9.64 -48.04 -0.46 -5.94 16 17 C 0.49 6.86 7.01 31.93 0.22 7.08 16 18 O -0.50 -7.39 11.66 -19.41 -0.23 -7.62 16 19 C -0.20 -2.06 9.93 -39.40 -0.39 -2.45 16 20 C 0.02 0.16 9.99 -37.22 -0.37 -0.21 16 21 C -0.09 -0.95 4.53 -104.71 -0.47 -1.43 16 22 C -0.06 -0.68 7.17 -38.98 -0.28 -0.96 16 23 C -0.24 -2.34 11.11 28.85 0.32 -2.02 16 24 S 0.14 1.23 23.02 -107.50 -2.47 -1.25 16 25 C -0.23 -2.06 10.83 30.05 0.33 -1.73 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 30 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.09 1.39 7.39 -51.93 -0.38 1.01 16 35 H 0.09 1.29 7.17 -51.93 -0.37 0.92 16 36 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.14 1.52 7.39 -52.48 -0.39 1.14 16 39 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 40 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -34.91 359.71 -8.51 -43.42 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.16 Total: -0.88 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.66 Total: 2.60 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.31 Total: -38.82 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.92 Total: -27.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.47 Total: -1.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.91 -8.51 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918900987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.550 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds