Wall clock time and date at job start Tue Mar 31 2020 13:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.70424 * 2 1 4 4 C 1.53400 * 109.58849 * 120.36180 * 2 1 3 5 5 C 1.51291 * 108.42469 * 169.21012 * 4 2 1 6 6 O 1.20763 * 120.80417 * 127.05637 * 5 4 2 7 7 C 1.51292 * 118.38754 * 307.04321 * 5 4 2 8 8 C 1.52902 * 108.48263 * 52.82162 * 7 5 4 9 9 N 1.46860 * 109.04099 * 310.79793 * 8 7 5 10 10 S 1.65598 * 120.38139 * 237.58248 * 9 8 7 11 11 O 1.42096 * 106.40056 * 344.84734 * 10 9 8 12 12 O 1.42104 * 106.40156 * 211.92476 * 10 9 8 13 13 C 1.76200 * 107.21752 * 98.38714 * 10 9 8 14 14 C 1.37643 * 120.13056 * 112.83121 * 13 10 9 15 15 C 1.38608 * 120.25243 * 179.97438 * 14 13 10 16 16 C 1.38655 * 120.49903 * 0.02783 * 15 14 13 17 17 C 1.37598 * 120.25226 * 359.73429 * 16 15 14 18 18 C 1.40695 * 120.12703 * 292.85610 * 13 10 9 19 19 C 1.41392 * 120.24911 * 359.95266 * 18 13 10 20 20 H 1.08000 * 119.99755 * 336.33818 * 19 18 13 21 21 C 1.39940 * 120.00393 * 156.60715 * 19 18 13 22 22 N 1.30824 * 120.00232 * 342.40682 * 21 19 18 23 23 Si 1.86802 * 120.00074 * 162.40444 * 21 19 18 24 24 H 1.48503 * 109.47071 * 4.64460 * 23 21 19 25 25 H 1.48498 * 109.47363 * 124.64909 * 23 21 19 26 26 H 1.48502 * 109.47009 * 244.64686 * 23 21 19 27 27 H 1.08994 * 109.47146 * 168.89824 * 1 2 3 28 28 H 1.09004 * 109.46541 * 288.89918 * 1 2 3 29 29 H 1.09001 * 109.47228 * 48.89598 * 1 2 3 30 30 H 1.09002 * 109.66825 * 288.94380 * 4 2 1 31 31 H 1.09002 * 109.67370 * 49.44165 * 4 2 1 32 32 H 1.09001 * 109.67262 * 172.69410 * 7 5 4 33 33 H 1.09003 * 109.67324 * 293.18535 * 7 5 4 34 34 H 1.09001 * 109.48594 * 190.90902 * 8 7 5 35 35 H 1.09004 * 109.42659 * 70.64731 * 8 7 5 36 36 H 1.08008 * 119.86896 * 0.02562 * 14 13 10 37 37 H 1.07996 * 119.75076 * 179.97438 * 15 14 13 38 38 H 1.08001 * 119.87462 * 179.97438 * 16 15 14 39 39 H 1.07994 * 120.13436 * 180.28253 * 17 16 15 40 40 H 0.97000 * 120.00164 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0443 -0.7305 1.2470 5 6 3.5330 -0.9511 1.0920 6 8 4.3035 -0.5968 1.9517 7 6 4.0329 -1.6267 -0.1660 8 6 3.4686 -0.8792 -1.3746 9 7 2.0223 -0.6991 -1.1941 10 16 0.9585 -1.2838 -2.3205 11 8 1.7238 -1.5754 -3.4817 12 8 -0.1510 -0.3958 -2.3235 13 6 0.3585 -2.8275 -1.7193 14 6 -0.9616 -2.9604 -1.3529 15 6 -1.4365 -4.1738 -0.8802 16 6 -0.5896 -5.2661 -0.7702 17 6 0.7326 -5.1578 -1.1352 18 6 1.2270 -3.9291 -1.6114 19 6 2.5850 -3.8048 -1.9852 20 1 2.8841 -3.0398 -2.6864 21 6 3.5405 -4.6764 -1.4509 22 7 3.2671 -5.3657 -0.3731 23 14 5.2064 -4.8560 -2.2768 24 1 5.3069 -3.8932 -3.4029 25 1 6.2807 -4.5776 -1.2900 26 1 5.3559 -6.2400 -2.7940 27 1 -0.3633 -1.0084 -0.1979 28 1 -0.3632 0.3329 0.9723 29 1 -0.3634 0.6756 -0.7744 30 1 1.8534 -0.1240 2.1324 31 1 1.5386 -1.6912 1.3442 32 1 5.1223 -1.5972 -0.1903 33 1 3.6934 -2.6623 -0.1862 34 1 3.6547 -1.4578 -2.2794 35 1 3.9507 0.0950 -1.4559 36 1 -1.6302 -2.1161 -1.4349 37 1 -2.4736 -4.2688 -0.5946 38 1 -0.9702 -6.2067 -0.4002 39 1 1.3894 -6.0111 -1.0530 40 1 3.9293 -5.9702 -0.0030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921554486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:35 Heat of formation + Delta-G solvation = -83.514413 kcal Electronic energy + Delta-G solvation = -27574.631661 eV Core-core repulsion = 23867.409636 eV Total energy + Delta-G solvation = -3707.222025 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.54254 -37.73283 -37.05783 -36.55724 -34.99000 -34.12680 -32.32544 -30.36426 -30.16098 -29.66258 -27.09660 -25.65902 -23.31528 -22.04013 -21.55686 -21.26112 -19.27370 -18.00127 -17.87013 -16.97928 -16.12563 -15.77065 -15.50275 -15.23905 -14.73924 -14.60735 -14.40865 -14.22023 -14.08835 -13.42288 -13.24467 -12.91169 -12.66886 -12.42838 -12.16027 -11.99641 -11.80928 -11.60470 -11.51486 -11.42142 -11.35559 -11.24618 -11.19187 -11.03087 -10.70787 -10.60165 -10.46416 -9.97413 -9.95648 -9.52665 -9.30513 -9.07128 -8.62437 -8.08354 -7.74676 -7.23328 -4.89738 1.37636 2.23296 2.30234 2.60777 2.88965 2.95826 3.00424 3.63525 3.65726 4.22744 4.45788 4.62889 4.93937 5.00936 5.11154 5.25733 5.39252 5.47100 5.52370 5.61915 5.71744 5.89895 5.96179 6.00294 6.07352 6.15029 6.21688 6.33084 6.35977 6.40526 6.57419 6.65853 6.77001 6.85912 6.95404 7.13191 7.23724 7.42970 7.58449 7.73267 7.81588 7.83834 8.23727 8.36199 8.55689 9.67971 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.009228 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.559076 B = 3033.426827 C = 4140.056920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.170 3.830 3 H 0.077 0.923 4 C -0.182 4.182 5 C 0.375 3.625 6 O -0.476 6.476 7 C -0.200 4.200 8 C 0.133 3.867 9 N -0.994 5.994 10 S 2.702 3.298 11 O -0.974 6.974 12 O -0.989 6.989 13 C -0.780 4.780 14 C -0.002 4.002 15 C -0.250 4.250 16 C -0.076 4.076 17 C -0.162 4.162 18 C 0.189 3.811 19 C -0.471 4.471 20 H 0.117 0.883 21 C 0.081 3.919 22 N -0.768 5.768 23 Si 0.893 3.107 24 H -0.246 1.246 25 H -0.266 1.266 26 H -0.265 1.265 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 4.458 1.489 4.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.064 3.936 3 H 0.095 0.905 4 C -0.222 4.222 5 C 0.252 3.748 6 O -0.351 6.351 7 C -0.239 4.239 8 C 0.008 3.992 9 N -0.829 5.829 10 S 2.802 3.198 11 O -0.964 6.964 12 O -0.979 6.979 13 C -0.875 4.875 14 C -0.021 4.021 15 C -0.270 4.270 16 C -0.095 4.095 17 C -0.182 4.182 18 C 0.185 3.815 19 C -0.499 4.499 20 H 0.134 0.866 21 C -0.141 4.141 22 N -0.390 5.390 23 Si 0.715 3.285 24 H -0.169 1.169 25 H -0.191 1.191 26 H -0.190 1.190 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.417 4.966 1.305 5.151 hybrid contribution 0.582 -1.185 0.442 1.392 sum 0.999 3.780 1.747 4.283 Atomic orbital electron populations 1.22869 0.92588 1.05755 1.04081 1.20764 0.95031 0.94967 0.82854 0.90464 1.22801 0.95439 1.04249 0.99688 1.24736 0.90906 0.72906 0.86234 1.90348 1.60071 1.41910 1.42820 1.22871 1.01945 1.04845 0.94236 1.21265 0.79303 0.99844 0.98833 1.57853 1.16735 1.71070 1.37230 1.01133 0.72042 0.73913 0.72677 1.93456 1.71123 1.85749 1.46088 1.93473 1.52729 1.64663 1.87074 1.29768 1.03935 1.18798 1.35014 1.20218 0.93054 0.96541 0.92336 1.20487 0.98426 0.94860 1.13242 1.20901 0.94418 0.96750 0.97404 1.21552 0.94067 0.98340 1.04212 1.16975 0.91156 0.89186 0.84218 1.20611 0.91677 1.15267 1.22299 0.86564 1.26021 1.01642 0.93111 0.93325 1.69819 1.36160 1.18205 1.14864 0.86438 0.80239 0.80617 0.81182 1.16872 1.19086 1.18958 0.90804 0.91445 0.87508 0.89147 0.87254 0.89391 0.84584 0.87016 0.91706 0.87320 0.88792 0.88931 0.85710 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 7.61 37.16 0.28 -2.62 16 2 C 0.17 2.54 3.52 -67.52 -0.24 2.30 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.18 -2.74 5.63 -27.39 -0.15 -2.90 16 5 C 0.37 6.34 6.68 -28.45 -0.19 6.15 16 6 O -0.48 -9.08 17.89 6.00 0.11 -8.97 16 7 C -0.20 -3.35 6.20 -27.64 -0.17 -3.52 16 8 C 0.13 2.16 5.50 -3.90 -0.02 2.14 16 9 N -0.99 -17.09 3.23 -106.61 -0.34 -17.43 16 10 S 2.70 54.62 4.53 -107.50 -0.49 54.13 16 11 O -0.97 -21.94 14.27 -57.17 -0.82 -22.75 16 12 O -0.99 -20.05 12.60 -57.17 -0.72 -20.77 16 13 C -0.78 -17.05 5.44 -38.87 -0.21 -17.26 16 14 C 0.00 -0.04 8.04 -39.66 -0.32 -0.35 16 15 C -0.25 -5.10 10.05 -39.29 -0.39 -5.49 16 16 C -0.08 -1.60 10.02 -39.66 -0.40 -2.00 16 17 C -0.16 -3.72 8.71 -38.87 -0.34 -4.06 16 18 C 0.19 4.40 5.58 -106.82 -0.60 3.80 16 19 C -0.47 -10.55 5.95 -37.75 -0.22 -10.78 16 20 H 0.12 2.61 3.48 -52.49 -0.18 2.43 16 21 C 0.08 1.71 3.64 -17.34 -0.06 1.65 16 22 N -0.77 -16.46 10.89 55.55 0.60 -15.85 16 23 Si 0.89 16.24 29.59 -169.99 -5.03 11.21 16 24 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 25 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 26 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 27 H 0.07 1.23 4.09 -51.93 -0.21 1.02 16 28 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 29 H 0.11 1.67 6.15 -51.93 -0.32 1.35 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.11 1.75 8.12 -51.93 -0.42 1.33 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.14 2.57 4.88 -51.93 -0.25 2.32 16 34 H 0.11 1.93 5.09 -51.93 -0.26 1.67 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 2.07 6.91 -52.48 -0.36 1.71 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 2.91 6.09 -52.49 -0.32 2.59 16 40 H 0.29 5.65 8.30 -40.82 -0.34 5.31 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -26.62 316.78 -9.38 -36.00 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.43 Total: 12.60 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -3.04 Total: -32.93 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.26 Total: -33.29 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -1.43 Total: -52.49 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.49 Total: 54.13 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.62 -9.38 -36.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921554486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.513 kcal (2) G-P(sol) polarization free energy of solvation -26.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds