Wall clock time and date at job start Tue Mar 31 2020 13:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.86658 * 2 1 4 4 C 1.51093 * 109.77738 * 239.31758 * 2 1 3 5 5 O 1.20753 * 120.95153 * 14.32766 * 4 2 1 6 6 C 1.51324 * 118.02604 * 194.48148 * 4 2 1 7 7 C 1.53240 * 108.64793 * 52.44342 * 6 4 2 8 8 C 1.53102 * 109.42843 * 303.81817 * 7 6 4 9 9 N 1.46876 * 109.26864 * 58.37432 * 8 7 6 10 10 S 1.65597 * 120.71507 * 122.88359 * 9 8 7 11 11 O 1.42102 * 106.40445 * 354.62410 * 10 9 8 12 12 O 1.42099 * 106.39928 * 221.70416 * 10 9 8 13 13 C 1.76198 * 107.22049 * 108.16753 * 10 9 8 14 14 C 1.37633 * 120.13220 * 113.74072 * 13 10 9 15 15 C 1.38615 * 120.25347 * 179.97438 * 14 13 10 16 16 C 1.38664 * 120.49561 * 0.02562 * 15 14 13 17 17 C 1.37594 * 120.24980 * 359.75656 * 16 15 14 18 18 C 1.40701 * 120.12327 * 293.71611 * 13 10 9 19 19 C 1.41392 * 120.24499 * 0.02976 * 18 13 10 20 20 H 1.07999 * 120.00253 * 27.11871 * 19 18 13 21 21 C 1.39950 * 119.99473 * 207.12416 * 19 18 13 22 22 N 1.30827 * 119.99603 * 197.27320 * 21 19 18 23 23 Si 1.86797 * 120.00253 * 17.27073 * 21 19 18 24 24 H 1.48500 * 109.47152 * 265.11404 * 23 21 19 25 25 H 1.48496 * 109.47267 * 25.11615 * 23 21 19 26 26 H 1.48507 * 109.46963 * 145.11835 * 23 21 19 27 27 H 1.09004 * 109.46990 * 299.09093 * 1 2 3 28 28 H 1.08994 * 109.47098 * 59.09321 * 1 2 3 29 29 H 1.09002 * 109.46565 * 179.09964 * 1 2 3 30 30 H 1.08998 * 109.60734 * 292.69385 * 6 4 2 31 31 H 1.08996 * 109.60635 * 172.18621 * 6 4 2 32 32 H 1.09003 * 109.47501 * 183.83475 * 7 6 4 33 33 H 1.08992 * 109.48808 * 63.81221 * 7 6 4 34 34 H 1.08999 * 109.50801 * 298.43580 * 8 7 6 35 35 H 1.09005 * 109.54035 * 178.32794 * 8 7 6 36 36 H 1.08000 * 119.87350 * 359.97438 * 14 13 10 37 37 H 1.07994 * 119.75442 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.87111 * 180.02562 * 16 15 14 39 39 H 1.08004 * 120.12954 * 180.25694 * 17 16 15 40 40 H 0.96997 * 120.00262 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0413 -0.7255 -1.2228 5 8 1.3073 -0.9766 -2.1481 6 6 3.4990 -1.1309 -1.2514 7 6 3.8146 -1.9151 0.0268 8 6 3.4536 -1.0652 1.2480 9 7 2.0294 -0.7112 1.1882 10 16 1.0060 -1.1096 2.4276 11 8 1.7652 -1.8922 3.3390 12 8 -0.1961 -1.5675 1.8239 13 6 0.6018 0.3837 3.2709 14 6 -0.6877 0.8642 3.2455 15 6 -1.0086 2.0385 3.9084 16 6 -0.0368 2.7424 4.6033 17 6 1.2579 2.2784 4.6459 18 6 1.5960 1.0894 3.9732 19 6 2.9241 0.6055 4.0061 20 1 3.2965 -0.0055 3.1971 21 6 3.7561 0.9182 5.0872 22 7 5.0518 0.7737 4.9785 23 14 3.0166 1.5419 6.6851 24 1 3.0373 3.0268 6.6938 25 1 1.6148 1.0657 6.8009 26 1 3.8099 1.0291 7.8310 27 1 -0.3633 0.4997 0.8981 28 1 -0.3633 0.5278 -0.8817 29 1 -0.3632 -1.0276 -0.0161 30 1 4.1255 -0.2402 -1.2982 31 1 3.6868 -1.7594 -2.1218 32 1 4.8775 -2.1553 0.0526 33 1 3.2332 -2.8369 0.0407 34 1 4.0548 -0.1560 1.2493 35 1 3.6496 -1.6325 2.1579 36 1 -1.4525 0.3242 2.7070 37 1 -2.0231 2.4080 3.8836 38 1 -0.2981 3.6560 5.1166 39 1 2.0124 2.8261 5.1912 40 1 5.6285 0.9901 5.7278 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921784785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:55 Heat of formation + Delta-G solvation = -98.591818 kcal Electronic energy + Delta-G solvation = -26996.984977 eV Core-core repulsion = 23289.109147 eV Total energy + Delta-G solvation = -3707.875830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09714 -39.60050 -38.33705 -37.96770 -36.70110 -35.64960 -34.20998 -32.50377 -31.88821 -31.45293 -27.89539 -27.16766 -25.09482 -23.77718 -23.07375 -22.93181 -20.78214 -19.75407 -19.40376 -18.61605 -18.01976 -17.47067 -17.10499 -16.77911 -16.32909 -16.16559 -15.86718 -15.67332 -15.40894 -15.22275 -14.85999 -14.54656 -14.10360 -14.00049 -13.95502 -13.66399 -13.34704 -13.15695 -13.05184 -13.02070 -12.85148 -12.80465 -12.64356 -12.50885 -12.27371 -12.08937 -11.95615 -11.68725 -11.51711 -11.21912 -11.02360 -10.83104 -9.97680 -9.75044 -9.59210 -9.03685 -6.68432 -0.32787 0.35505 0.78883 0.84284 1.22686 1.37432 1.44509 2.04683 2.13132 2.51347 2.91584 2.97599 3.32127 3.49834 3.69963 3.91888 3.97331 4.05812 4.20640 4.26364 4.30844 4.33168 4.51134 4.62842 4.67534 4.69170 4.82368 4.83983 4.87493 4.92924 5.00090 5.14688 5.20907 5.24880 5.36248 5.40352 5.52954 5.63988 5.71414 5.85052 6.05104 6.24765 6.40002 6.50921 6.70236 7.99261 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.006550 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.580113 B = 4273.701674 C = 5265.242121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.106 3.894 3 H 0.123 0.877 4 C 0.365 3.635 5 O -0.476 6.476 6 C -0.159 4.159 7 C -0.120 4.120 8 C 0.105 3.895 9 N -0.989 5.989 10 S 2.708 3.292 11 O -0.992 6.992 12 O -0.996 6.996 13 C -0.784 4.784 14 C 0.004 3.996 15 C -0.254 4.254 16 C -0.040 4.040 17 C -0.261 4.261 18 C 0.143 3.857 19 C -0.465 4.465 20 H 0.108 0.892 21 C 0.061 3.939 22 N -0.801 5.801 23 Si 0.947 3.053 24 H -0.248 1.248 25 H -0.260 1.260 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 2.016 -6.506 6.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.001 4.001 3 H 0.140 0.860 4 C 0.239 3.761 5 O -0.350 6.350 6 C -0.196 4.196 7 C -0.159 4.159 8 C -0.019 4.019 9 N -0.828 5.828 10 S 2.807 3.193 11 O -0.983 6.983 12 O -0.987 6.987 13 C -0.878 4.878 14 C -0.015 4.015 15 C -0.274 4.274 16 C -0.059 4.059 17 C -0.280 4.280 18 C 0.138 3.862 19 C -0.492 4.492 20 H 0.126 0.874 21 C -0.160 4.160 22 N -0.423 5.423 23 Si 0.771 3.229 24 H -0.173 1.173 25 H -0.185 1.185 26 H -0.203 1.203 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.384 0.971 -6.757 6.837 hybrid contribution -0.007 0.962 1.134 1.487 sum -0.390 1.933 -5.623 5.959 Atomic orbital electron populations 1.22597 0.92304 1.05516 1.04076 1.21696 0.95885 0.98186 0.84284 0.85962 1.25398 0.91877 0.73513 0.85269 1.90370 1.61099 1.45396 1.38090 1.22312 0.93039 1.03909 1.00359 1.21908 1.04399 0.97812 0.91760 1.21709 0.79321 1.00846 1.00029 1.57700 1.20677 1.73378 1.31074 1.00833 0.71985 0.74341 0.72099 1.93479 1.71925 1.69414 1.63475 1.93482 1.47391 1.81239 1.76564 1.30080 1.01719 1.26340 1.29676 1.20706 0.93423 0.94308 0.93095 1.20958 0.99944 0.98896 1.07571 1.21259 0.92324 0.98019 0.94258 1.21344 0.97758 0.99420 1.09527 1.17267 0.91265 0.89811 0.87845 1.20241 0.94481 1.27035 1.07429 0.87431 1.26672 0.94543 0.91829 1.02964 1.69610 1.04921 1.33403 1.34405 0.85789 0.79945 0.79755 0.77361 1.17302 1.18451 1.20294 0.91373 0.88956 0.89810 0.85386 0.87616 0.86275 0.92001 0.89447 0.89582 0.85372 0.84655 0.84677 0.87444 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.07 7.06 71.98 0.51 -5.56 16 2 C 0.11 3.20 3.76 44.24 0.17 3.37 16 3 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 4 C 0.36 10.10 6.68 29.43 0.20 10.30 16 5 O -0.48 -15.53 16.93 -1.43 -0.02 -15.55 16 6 C -0.16 -3.20 6.14 30.13 0.19 -3.01 16 7 C -0.12 -2.71 6.09 30.71 0.19 -2.52 16 8 C 0.11 3.28 4.50 86.34 0.39 3.67 16 9 N -0.99 -34.63 3.11 -493.97 -1.53 -36.16 16 10 S 2.71 116.07 4.47 -56.49 -0.25 115.82 16 11 O -0.99 -48.96 14.79 -128.00 -1.89 -50.86 16 12 O -1.00 -43.06 12.77 -128.00 -1.63 -44.70 16 13 C -0.78 -34.87 5.52 22.73 0.13 -34.75 16 14 C 0.00 0.17 8.06 22.22 0.18 0.35 16 15 C -0.25 -9.26 10.05 22.46 0.23 -9.03 16 16 C -0.04 -1.51 10.02 22.22 0.22 -1.29 16 17 C -0.26 -11.37 7.10 22.73 0.16 -11.21 16 18 C 0.14 6.77 5.19 -21.29 -0.11 6.65 16 19 C -0.46 -22.96 8.19 23.46 0.19 -22.77 16 20 H 0.11 5.19 3.41 -2.91 -0.01 5.18 16 21 C 0.06 2.94 5.43 85.26 0.46 3.41 16 22 N -0.80 -38.08 13.93 21.83 0.30 -37.77 16 23 Si 0.95 39.43 24.41 68.60 1.67 41.11 16 24 H -0.25 -9.40 6.67 99.48 0.66 -8.73 16 25 H -0.26 -11.60 6.73 99.48 0.67 -10.93 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 27 H 0.07 2.29 4.52 -2.38 -0.01 2.28 16 28 H 0.09 2.58 8.04 -2.39 -0.02 2.56 16 29 H 0.08 3.07 6.15 -2.39 -0.01 3.05 16 30 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 35 H 0.09 3.16 6.07 -2.38 -0.01 3.14 16 36 H 0.13 4.69 6.92 -2.91 -0.02 4.67 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.11 4.54 4.25 -2.91 -0.01 4.53 16 40 H 0.30 12.84 8.30 -92.71 -0.77 12.07 16 Total: -1.00 -62.70 317.08 0.74 -61.97 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 1.01 Total: 28.54 kcal Atomic # 6 Polarization: -65.49 SS G_CDS: 3.09 Total: -62.40 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.23 Total: -73.93 kcal Atomic # 8 Polarization: -107.55 SS G_CDS: -3.55 Total: -111.10 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.67 Total: 41.11 kcal Atomic # 16 Polarization: 116.07 SS G_CDS: -0.25 Total: 115.82 kcal Total: -62.70 0.74 -61.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921784785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.625 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds