Wall clock time and date at job start Tue Mar 31 2020 13:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.53224 * 2 1 4 4 C 1.53096 * 109.50312 * 239.89663 * 2 1 3 5 5 C 1.53235 * 109.42916 * 181.68802 * 4 2 1 6 6 C 1.51324 * 108.64614 * 56.18371 * 5 4 2 7 7 O 1.20761 * 121.02475 * 127.40032 * 6 5 4 8 8 C 1.51910 * 117.88480 * 307.25046 * 6 5 4 9 9 N 1.46876 * 109.50338 * 120.10358 * 2 1 3 10 10 S 1.65600 * 120.71716 * 357.00748 * 9 2 1 11 11 O 1.42092 * 106.40280 * 164.15806 * 10 9 2 12 12 O 1.42107 * 106.40093 * 31.23581 * 10 9 2 13 13 C 1.76199 * 107.21664 * 277.70027 * 10 9 2 14 14 C 1.38654 * 119.87267 * 276.23116 * 13 10 9 15 15 C 1.38620 * 120.49948 * 179.97438 * 14 13 10 16 16 C 1.37640 * 120.24657 * 359.75858 * 15 14 13 17 17 C 1.40693 * 119.74256 * 0.51596 * 16 15 14 18 18 C 1.41404 * 120.24225 * 179.74177 * 17 16 15 19 19 H 1.07998 * 119.99969 * 151.41042 * 18 17 16 20 20 C 1.39944 * 119.99760 * 331.41787 * 18 17 16 21 21 N 1.30821 * 119.99900 * 334.50539 * 20 18 17 22 22 Si 1.86800 * 120.00083 * 154.51058 * 20 18 17 23 23 H 1.48500 * 109.47020 * 59.99667 * 22 20 18 24 24 H 1.48496 * 109.46929 * 299.99562 * 22 20 18 25 25 H 1.48497 * 109.47313 * 179.97438 * 22 20 18 26 26 C 1.37601 * 119.87730 * 96.21248 * 13 10 9 27 27 H 1.08998 * 109.47073 * 289.71157 * 1 2 3 28 28 H 1.08999 * 109.46818 * 49.71474 * 1 2 3 29 29 H 1.09002 * 109.46661 * 169.71456 * 1 2 3 30 30 H 1.08998 * 109.48626 * 301.67729 * 4 2 1 31 31 H 1.09000 * 109.47989 * 61.69519 * 4 2 1 32 32 H 1.09001 * 109.61034 * 175.92623 * 5 4 2 33 33 H 1.09000 * 109.61139 * 296.43201 * 5 4 2 34 34 H 1.09002 * 109.98429 * 286.92799 * 8 6 5 35 35 H 1.09008 * 109.87470 * 165.86540 * 8 6 5 36 36 H 1.08003 * 119.75217 * 359.97438 * 14 13 10 37 37 H 1.07995 * 119.87234 * 180.02562 * 15 14 13 38 38 H 1.08005 * 120.12250 * 180.26116 * 16 15 14 39 39 H 0.96999 * 120.00497 * 356.50570 * 21 20 18 40 40 H 1.08000 * 120.12660 * 0.04300 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2485 5 6 3.5730 -0.7598 -1.2256 6 6 4.0224 -1.4137 0.0630 7 8 4.7956 -2.3412 0.0535 8 6 3.4726 -0.8639 1.3680 9 7 2.0205 -0.6944 1.1977 10 16 0.9627 -1.2681 2.3355 11 8 1.6950 -2.1831 3.1390 12 8 -0.2234 -1.6229 1.6378 13 6 0.5385 0.0843 3.3822 14 6 1.3671 0.4250 4.4404 15 6 1.0463 1.4869 5.2717 16 6 -0.0985 2.2186 5.0512 17 6 -0.9497 1.8782 3.9840 18 6 -2.1313 2.6194 3.7512 19 1 -2.5310 2.6983 2.7510 20 6 -2.7826 3.2507 4.8169 21 7 -2.6417 2.7917 6.0338 22 14 -3.8533 4.7485 4.5017 23 1 -4.9540 4.3838 3.5739 24 1 -3.0310 5.8259 3.8950 25 1 -4.4267 5.2262 5.7855 26 6 -0.6136 0.7987 3.1461 27 1 -0.3633 0.3466 0.9674 28 1 -0.3633 0.6645 -0.7839 29 1 -0.3633 -1.0112 -0.1835 30 1 1.6540 -1.7426 -1.2622 31 1 1.7033 -0.1945 -2.1394 32 1 3.9381 -1.3368 -2.0752 33 1 3.9636 0.2566 -1.2756 34 1 3.9338 0.0984 1.5906 35 1 3.6705 -1.5657 2.1783 36 1 2.2694 -0.1413 4.6184 37 1 1.6992 1.7436 6.0927 38 1 -0.3444 3.0482 5.6976 39 1 -2.1273 1.9846 6.1913 40 1 -1.2578 0.5314 2.3215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921787768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:23 Heat of formation + Delta-G solvation = -85.787074 kcal Electronic energy + Delta-G solvation = -25962.062808 eV Core-core repulsion = 22254.742233 eV Total energy + Delta-G solvation = -3707.320575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00846 -38.01648 -37.68010 -36.83332 -35.48132 -34.12342 -32.65907 -31.32069 -30.15506 -29.77247 -26.56876 -25.35998 -24.54045 -22.15632 -21.98506 -21.31836 -19.81774 -18.90265 -18.15806 -17.05631 -16.48234 -16.41259 -15.53603 -15.41506 -15.12012 -14.94036 -14.81703 -14.37304 -14.14812 -13.97812 -13.50543 -13.42060 -12.89830 -12.77914 -12.50601 -12.43036 -12.13542 -11.83494 -11.80682 -11.61883 -11.58416 -11.42406 -11.31935 -11.13579 -11.01364 -10.75267 -10.51288 -10.34495 -9.96071 -9.79245 -9.73335 -9.18622 -8.91501 -8.31170 -7.92708 -7.40430 -4.68074 0.71109 1.71511 1.94805 2.50547 3.05598 3.10077 3.21386 3.25984 3.80665 3.88438 4.09666 4.28679 4.44671 4.52347 4.60028 4.82088 4.90984 5.08416 5.12566 5.25095 5.31003 5.42600 5.52741 5.64247 5.70553 5.78572 5.87232 5.90736 5.98376 6.12490 6.37770 6.43266 6.49559 6.64868 6.73605 6.96194 7.15793 7.23636 7.41060 7.46394 7.57115 7.83703 7.95258 8.43774 8.62109 9.86882 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.003983 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.234594 B = 7027.353928 C = 7562.924992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.150 3.850 3 H 0.082 0.918 4 C -0.122 4.122 5 C -0.168 4.168 6 C 0.358 3.642 7 O -0.450 6.450 8 C 0.072 3.928 9 N -0.994 5.994 10 S 2.685 3.315 11 O -0.971 6.971 12 O -0.959 6.959 13 C -0.620 4.620 14 C -0.162 4.162 15 C -0.099 4.099 16 C -0.172 4.172 17 C 0.080 3.920 18 C -0.521 4.521 19 H 0.081 0.919 20 C 0.038 3.962 21 N -0.792 5.792 22 Si 1.067 2.933 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.129 4.129 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.298 0.702 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -0.295 -11.193 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.161 4.161 5 C -0.206 4.206 6 C 0.231 3.769 7 O -0.321 6.321 8 C -0.055 4.055 9 N -0.833 5.833 10 S 2.783 3.217 11 O -0.961 6.961 12 O -0.949 6.949 13 C -0.712 4.712 14 C -0.183 4.183 15 C -0.118 4.118 16 C -0.192 4.192 17 C 0.076 3.924 18 C -0.549 4.549 19 H 0.100 0.900 20 C -0.184 4.184 21 N -0.415 5.415 22 Si 0.890 3.110 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.149 4.149 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.839 -0.586 -10.339 12.410 hybrid contribution 1.042 -0.277 -0.336 1.130 sum 7.881 -0.863 -10.675 13.297 Atomic orbital electron populations 1.22956 0.92074 1.05683 1.04766 1.21064 0.95474 0.95802 0.83190 0.89962 1.21966 0.92982 1.02518 0.98659 1.22297 0.98019 1.03262 0.97014 1.25287 0.77250 0.81265 0.93113 1.90425 1.28175 1.23846 1.89675 1.22256 0.81097 1.03974 0.98132 1.57999 1.15337 1.74724 1.35193 1.02001 0.72717 0.74415 0.72555 1.93500 1.72880 1.60945 1.68779 1.93608 1.46368 1.82854 1.72096 1.29862 1.06024 1.21357 1.13968 1.19991 0.99921 1.00831 0.97524 1.20735 0.97036 0.95945 0.98119 1.21429 0.95054 1.00843 1.01897 1.17743 0.92998 0.90269 0.91422 1.20584 1.08043 1.28277 0.98011 0.90048 1.27088 0.97825 1.01672 0.91831 1.70500 1.28592 1.19679 1.22700 0.83594 0.75962 0.74332 0.77087 1.19926 1.19872 1.19757 1.20875 0.95781 0.95625 1.02650 0.90070 0.91143 0.88249 0.90701 0.89251 0.89149 0.88001 0.87892 0.86157 0.87633 0.88129 0.87207 0.88843 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 7.58 37.16 0.28 -2.36 16 2 C 0.15 1.74 3.41 -67.67 -0.23 1.51 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.12 -1.11 5.35 -26.56 -0.14 -1.25 16 5 C -0.17 -1.44 6.14 -27.46 -0.17 -1.61 16 6 C 0.36 4.27 6.88 -28.13 -0.19 4.07 16 7 O -0.45 -6.76 17.90 6.00 0.11 -6.66 16 8 C 0.07 0.87 6.77 -4.22 -0.03 0.84 16 9 N -0.99 -13.86 3.29 -107.07 -0.35 -14.21 16 10 S 2.68 48.70 5.21 -107.50 -0.56 48.14 16 11 O -0.97 -19.64 15.89 -57.17 -0.91 -20.55 16 12 O -0.96 -18.49 12.64 -57.17 -0.72 -19.22 16 13 C -0.62 -12.87 5.87 -39.66 -0.23 -13.10 16 14 C -0.16 -3.34 9.53 -39.29 -0.37 -3.72 16 15 C -0.10 -2.11 10.02 -39.66 -0.40 -2.50 16 16 C -0.17 -4.07 7.96 -38.87 -0.31 -4.38 16 17 C 0.08 1.95 5.23 -106.83 -0.56 1.40 16 18 C -0.52 -12.88 8.97 -37.74 -0.34 -13.22 16 19 H 0.08 1.93 7.96 -52.49 -0.42 1.51 16 20 C 0.04 0.91 4.91 -17.34 -0.09 0.82 16 21 N -0.79 -20.04 12.50 55.55 0.69 -19.35 16 22 Si 1.07 20.20 30.00 -169.99 -5.10 15.10 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 C -0.13 -2.90 8.20 -38.87 -0.32 -3.22 16 27 H 0.08 1.31 3.00 -51.93 -0.16 1.15 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.43 6.38 -51.93 -0.33 1.10 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.12 1.61 6.80 -51.92 -0.35 1.26 16 36 H 0.11 1.96 7.75 -52.48 -0.41 1.55 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.11 2.64 6.74 -52.48 -0.35 2.29 16 39 H 0.30 7.76 6.73 -40.82 -0.27 7.49 16 40 H 0.12 2.60 5.77 -52.49 -0.30 2.29 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -30.23 331.75 -9.71 -39.95 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.77 Total: 8.50 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: -3.10 Total: -36.71 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.34 Total: -33.56 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -1.52 Total: -46.42 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.10 Total: 15.10 kcal Atomic # 16 Polarization: 48.70 SS G_CDS: -0.56 Total: 48.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.23 -9.71 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921787768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.839 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds