Wall clock time and date at job start Tue Mar 31 2020 13:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.53883 * 2 1 4 4 C 1.53591 * 109.61525 * 120.36893 * 2 1 3 5 5 C 1.53224 * 109.35961 * 178.43209 * 4 2 1 6 6 C 1.51329 * 108.65081 * 303.69301 * 5 4 2 7 7 O 1.20761 * 121.02242 * 232.61663 * 6 5 4 8 8 C 1.51494 * 117.95496 * 52.59893 * 6 5 4 9 9 N 1.46873 * 109.50511 * 239.90108 * 2 1 3 10 10 S 1.65604 * 120.71163 * 2.96607 * 9 2 1 11 11 O 1.42095 * 106.40234 * 329.24623 * 10 9 2 12 12 O 1.42105 * 106.40196 * 196.32444 * 10 9 2 13 13 C 1.76198 * 107.21796 * 82.78837 * 10 9 2 14 14 C 1.38662 * 119.87606 * 261.67728 * 13 10 9 15 15 C 1.38610 * 120.50506 * 179.97438 * 14 13 10 16 16 C 1.37643 * 120.24799 * 359.72311 * 15 14 13 17 17 C 1.40704 * 119.73870 * 0.52992 * 16 15 14 18 18 C 1.41394 * 120.23960 * 179.74052 * 17 16 15 19 19 H 1.08004 * 119.99878 * 148.59152 * 18 17 16 20 20 C 1.39950 * 120.00373 * 328.86913 * 18 17 16 21 21 N 1.30820 * 119.99627 * 345.41968 * 20 18 17 22 22 Si 1.86797 * 119.99996 * 165.42347 * 20 18 17 23 23 H 1.48504 * 109.47105 * 59.99996 * 22 20 18 24 24 H 1.48501 * 109.47099 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47406 * 299.99841 * 22 20 18 26 26 C 1.37596 * 119.87959 * 81.65833 * 13 10 9 27 27 H 1.09001 * 109.46923 * 191.09743 * 1 2 3 28 28 H 1.09002 * 109.46906 * 311.08974 * 1 2 3 29 29 H 1.08994 * 109.47876 * 71.09265 * 1 2 3 30 30 H 1.09001 * 109.61739 * 58.40143 * 4 2 1 31 31 H 1.09002 * 109.40709 * 298.33938 * 4 2 1 32 32 H 1.09009 * 109.60642 * 183.94528 * 5 4 2 33 33 H 1.08998 * 109.75058 * 63.52636 * 5 4 2 34 34 H 1.09004 * 109.82876 * 194.31530 * 8 6 5 35 35 H 1.09000 * 109.83194 * 73.37111 * 8 6 5 36 36 H 1.08000 * 119.74449 * 359.97438 * 14 13 10 37 37 H 1.07994 * 119.88089 * 179.97438 * 15 14 13 38 38 H 1.07995 * 120.13041 * 180.30073 * 16 15 14 39 39 H 0.97003 * 119.99595 * 179.97438 * 21 20 18 40 40 H 1.07999 * 120.12718 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0456 -0.7314 1.2483 5 6 3.5773 -0.7622 1.2225 6 6 4.0267 -1.4105 -0.0689 7 8 4.8028 -2.3356 -0.0637 8 6 3.4726 -0.8634 -1.3685 9 7 2.0203 -0.6943 -1.1978 10 16 0.9625 -1.2684 -2.3352 11 8 -0.2273 -1.6130 -1.6389 12 8 1.6920 -2.1918 -3.1318 13 6 0.5485 0.0805 -3.3905 14 6 -0.6310 0.7803 -3.1864 15 6 -0.9693 1.8439 -4.0084 16 6 -0.1327 2.2206 -5.0345 17 6 1.0642 1.5142 -5.2543 18 6 1.9286 1.8886 -6.3087 19 1 2.9948 1.7485 -6.2084 20 6 1.4032 2.4460 -7.4800 21 7 0.1211 2.3627 -7.7259 22 14 2.5328 3.3088 -8.6920 23 1 3.5593 2.3525 -9.1789 24 1 1.7365 3.8074 -9.8420 25 1 3.2006 4.4517 -8.0191 26 6 1.3970 0.4357 -4.4137 27 1 -0.3633 -1.0085 0.1978 28 1 -0.3633 0.6754 0.7746 29 1 -0.3634 0.3330 -0.9721 30 1 1.6617 -1.7515 1.2594 31 1 1.7074 -0.2060 2.1414 32 1 3.9458 -1.3407 2.0698 33 1 3.9671 0.2543 1.2765 34 1 3.6703 -1.5649 -2.1791 35 1 3.9333 0.0991 -1.5908 36 1 -1.2912 0.4945 -2.3809 37 1 -1.8906 2.3817 -3.8406 38 1 -0.3958 3.0526 -5.6708 39 1 -0.2432 2.7494 -8.5376 40 1 2.3156 -0.1102 -4.5705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921787772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:26 Heat of formation + Delta-G solvation = -80.543222 kcal Electronic energy + Delta-G solvation = -25885.197642 eV Core-core repulsion = 22178.104458 eV Total energy + Delta-G solvation = -3707.093184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95978 -37.81507 -37.59541 -36.75947 -35.40691 -33.84764 -32.59580 -31.26926 -30.12786 -29.89259 -26.56611 -25.53160 -24.48714 -22.12298 -21.92521 -21.08744 -19.76222 -18.71927 -17.80952 -16.98335 -16.45312 -16.12861 -15.50186 -15.42672 -15.14352 -15.00922 -14.77734 -14.63270 -14.12450 -13.56693 -13.41219 -13.36520 -12.75550 -12.73411 -12.48912 -12.38116 -11.97400 -11.81502 -11.74963 -11.54541 -11.45120 -11.39835 -11.28597 -11.14225 -11.03846 -10.90110 -10.61104 -10.31109 -9.91969 -9.77806 -9.68496 -9.37199 -8.84587 -8.10808 -7.70104 -6.92419 -4.58758 0.79265 1.77752 2.11017 2.58465 2.98877 3.00810 3.03648 3.28650 3.82318 3.87934 4.17844 4.37626 4.48554 4.57109 4.63124 4.86525 4.96640 5.11142 5.27206 5.32577 5.35441 5.48543 5.54781 5.65633 5.74334 5.83107 5.90762 5.97418 6.02509 6.18797 6.50361 6.54751 6.59979 6.68384 6.83359 7.01089 7.15473 7.28772 7.29905 7.62582 7.75385 7.87183 8.34060 8.62722 8.67271 10.05509 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.004134 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.455188 B = 6771.471485 C = 7509.732122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.150 3.850 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.168 4.168 6 C 0.358 3.642 7 O -0.450 6.450 8 C 0.070 3.930 9 N -0.994 5.994 10 S 2.684 3.316 11 O -0.964 6.964 12 O -0.968 6.968 13 C -0.633 4.633 14 C -0.146 4.146 15 C -0.121 4.121 16 C -0.109 4.109 17 C 0.096 3.904 18 C -0.468 4.468 19 H 0.082 0.918 20 C 0.076 3.924 21 N -0.800 5.800 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.120 4.120 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.284 0.716 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.648 0.841 13.700 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.206 4.206 6 C 0.231 3.769 7 O -0.321 6.321 8 C -0.056 4.056 9 N -0.833 5.833 10 S 2.783 3.217 11 O -0.955 6.955 12 O -0.958 6.958 13 C -0.725 4.725 14 C -0.167 4.167 15 C -0.141 4.141 16 C -0.129 4.129 17 C 0.093 3.907 18 C -0.497 4.497 19 H 0.100 0.900 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.141 4.141 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.610 -0.510 13.473 13.733 hybrid contribution 0.381 1.307 -1.052 1.721 sum 2.991 0.797 12.421 12.801 Atomic orbital electron populations 1.22887 0.92245 1.05441 1.04429 1.21151 0.95325 0.95826 0.83254 0.89941 1.22043 0.93030 1.02402 0.98614 1.22291 0.97961 1.03323 0.97042 1.25187 0.77413 0.81189 0.93112 1.90427 1.28156 1.23852 1.89694 1.22192 0.81038 1.04191 0.98147 1.58006 1.15398 1.74687 1.35173 1.01979 0.72674 0.74510 0.72516 1.93584 1.46251 1.83258 1.72365 1.93520 1.72891 1.60487 1.68940 1.29775 1.05798 1.21855 1.15042 1.20198 0.95958 0.98758 1.01806 1.20824 0.98796 0.97662 0.96772 1.21561 0.95852 0.99523 0.95967 1.17662 0.92496 0.89226 0.91350 1.19523 0.95055 1.36469 0.98680 0.90021 1.25891 0.95510 0.93891 0.98919 1.69750 1.13399 1.34160 1.25199 0.86289 0.80591 0.80292 0.79157 1.18838 1.20252 1.18773 1.20765 0.98890 0.97389 0.97068 0.88414 0.91399 0.90185 0.90723 0.89409 0.89229 0.88020 0.86013 0.87751 0.86827 0.88222 0.86305 0.90516 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 7.59 37.16 0.28 -2.07 16 2 C 0.15 1.67 3.43 -67.42 -0.23 1.44 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.08 5.38 -26.31 -0.14 -1.22 16 5 C -0.17 -1.46 6.14 -27.46 -0.17 -1.63 16 6 C 0.36 4.41 6.87 -28.34 -0.19 4.21 16 7 O -0.45 -6.98 17.90 6.00 0.11 -6.87 16 8 C 0.07 0.90 6.74 -4.42 -0.03 0.87 16 9 N -0.99 -13.98 3.29 -107.02 -0.35 -14.33 16 10 S 2.68 48.96 5.20 -107.50 -0.56 48.40 16 11 O -0.96 -17.94 12.56 -57.17 -0.72 -18.66 16 12 O -0.97 -20.41 15.96 -57.17 -0.91 -21.32 16 13 C -0.63 -13.18 5.85 -39.66 -0.23 -13.42 16 14 C -0.15 -2.99 8.46 -39.29 -0.33 -3.32 16 15 C -0.12 -2.58 10.02 -39.66 -0.40 -2.98 16 16 C -0.11 -2.61 8.65 -38.87 -0.34 -2.95 16 17 C 0.10 2.40 5.50 -106.82 -0.59 1.81 16 18 C -0.47 -11.69 9.04 -37.74 -0.34 -12.04 16 19 H 0.08 1.94 7.89 -52.48 -0.41 1.53 16 20 C 0.08 1.81 5.16 -17.34 -0.09 1.72 16 21 N -0.80 -19.82 11.23 55.55 0.62 -19.19 16 22 Si 0.91 17.85 29.58 -169.99 -5.03 12.82 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 26 C -0.12 -2.76 9.26 -38.88 -0.36 -3.12 16 27 H 0.10 1.30 6.44 -51.93 -0.33 0.97 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.15 3.13 -51.93 -0.16 0.99 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.12 1.75 6.81 -51.93 -0.35 1.39 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.11 2.06 5.90 -52.49 -0.31 1.75 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.90 6.56 -52.49 -0.34 2.56 16 39 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 40 H 0.11 2.39 7.81 -52.49 -0.41 1.98 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -30.46 332.99 -9.82 -40.28 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.84 Total: 6.54 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -3.16 Total: -32.69 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.27 Total: -33.52 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.52 Total: -46.85 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 48.96 SS G_CDS: -0.56 Total: 48.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.46 -9.82 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921787772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.262 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds