Wall clock time and date at job start Tue Mar 31 2020 14:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35872 * 117.00141 * 2 1 4 4 C 1.38859 * 119.91333 * 179.97438 * 3 2 1 5 5 C 1.37853 * 120.08590 * 180.02562 * 4 3 2 6 6 C 1.39579 * 119.91248 * 359.97438 * 5 4 3 7 7 C 1.47781 * 120.08581 * 180.02562 * 6 5 4 8 8 C 1.31132 * 117.80984 * 64.99918 * 7 6 5 9 9 C 1.50348 * 123.42698 * 180.79810 * 8 7 6 10 10 N 1.46986 * 109.15247 * 348.97768 * 9 8 7 11 11 S 1.65607 * 121.33373 * 223.22979 * 10 9 8 12 12 O 1.42097 * 106.40132 * 336.46024 * 11 10 9 13 13 O 1.42107 * 106.39904 * 203.54296 * 11 10 9 14 14 C 1.76199 * 107.21942 * 90.00196 * 11 10 9 15 15 H 1.08000 * 119.99782 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99956 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00060 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99957 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47196 * 89.99970 * 18 16 14 20 20 H 1.48502 * 109.47265 * 210.00296 * 18 16 14 21 21 H 1.48503 * 109.47102 * 329.99934 * 18 16 14 22 22 C 1.47311 * 117.33040 * 43.50266 * 10 9 8 23 23 C 1.49987 * 117.80483 * 244.97715 * 7 6 5 24 24 C 1.39583 * 119.83092 * 0.27312 * 6 5 4 25 25 C 1.37856 * 119.90799 * 359.46630 * 24 6 5 26 26 H 1.09000 * 109.46555 * 299.99938 * 1 2 3 27 27 H 1.09001 * 109.46729 * 59.99559 * 1 2 3 28 28 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.95769 * 0.02562 * 4 3 2 30 30 H 1.07994 * 120.04422 * 179.97438 * 5 4 3 31 31 H 1.08001 * 118.28972 * 0.81560 * 8 7 6 32 32 H 1.08999 * 109.51886 * 229.07571 * 9 8 7 33 33 H 1.08998 * 109.52217 * 108.88463 * 9 8 7 34 34 H 0.97000 * 119.99617 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.76282 * 57.09419 * 22 10 9 36 36 H 1.09007 * 109.76330 * 177.85681 * 22 10 9 37 37 H 1.08996 * 109.31699 * 281.29376 * 23 7 6 38 38 H 1.08992 * 109.31981 * 40.91222 * 23 7 6 39 39 H 1.07999 * 120.04596 * 179.72410 * 24 6 5 40 40 H 1.07999 * 119.95730 * 180.23331 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0623 2.5075 0.0011 6 6 3.3038 3.6793 0.0005 7 6 3.9748 4.9960 0.0005 8 6 4.6897 5.3183 -1.0504 9 6 5.4385 6.6160 -1.1764 10 7 5.0230 7.5196 -0.0942 11 16 4.7196 9.1225 -0.3794 12 8 5.4420 9.4647 -1.5542 13 8 4.8936 9.7909 0.8625 14 6 3.0112 9.2656 -0.7863 15 1 2.3861 8.3851 -0.8098 16 6 2.4725 10.5014 -1.0748 17 7 3.2336 11.5736 -1.0458 18 14 0.6612 10.6532 -1.5056 19 1 -0.1255 10.8758 -0.2659 20 1 0.4662 11.8004 -2.4283 21 1 0.2028 9.4041 -2.1651 22 6 4.8933 6.9437 1.2554 23 6 3.7919 5.8744 1.2025 24 6 1.9100 3.6042 0.0052 25 6 1.2879 2.3741 -0.0008 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.0188 0.3741 0.0005 30 1 5.1409 2.5616 0.0019 31 1 4.7432 4.6151 -1.8684 32 1 5.2141 7.0739 -2.1398 33 1 6.5095 6.4271 -1.1024 34 1 2.8545 12.4430 -1.2492 35 1 5.8379 6.4895 1.5547 36 1 4.6180 7.7245 1.9645 37 1 2.8174 6.3597 1.1495 38 1 3.8428 5.2656 2.1051 39 1 1.3198 4.5087 0.0093 40 1 0.2095 2.3151 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:44 Heat of formation + Delta-G solvation = -86.296896 kcal Electronic energy + Delta-G solvation = -24889.718340 eV Core-core repulsion = 21182.375658 eV Total energy + Delta-G solvation = -3707.342682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.27246 -38.55941 -36.96927 -35.28390 -33.95545 -33.16161 -32.75572 -31.26483 -30.60644 -29.18472 -27.41595 -26.10998 -24.34176 -23.32088 -22.47513 -21.54817 -19.05040 -18.34805 -17.87916 -17.21957 -16.42401 -16.25785 -15.94739 -15.38374 -15.09267 -14.78353 -14.63880 -14.24898 -13.94244 -13.79969 -13.56803 -13.43085 -13.21563 -12.75046 -12.68261 -12.17500 -12.12119 -12.00165 -11.77090 -11.36166 -11.27801 -11.21453 -11.05644 -10.96659 -10.68833 -10.59856 -10.28956 -10.16855 -10.00432 -9.24121 -9.11979 -8.91069 -8.76614 -8.22194 -7.99535 -6.68643 -5.30141 1.22012 1.27586 2.25805 2.39832 3.06240 3.07113 3.13107 3.19494 3.66707 4.05699 4.50294 4.64961 4.65740 4.75247 4.81970 4.87490 4.89962 5.13959 5.18173 5.29351 5.35055 5.48301 5.50236 5.61664 5.69643 5.81979 5.85988 5.94208 6.00764 6.05271 6.16798 6.19399 6.21316 6.33639 6.46942 6.52056 6.58115 6.65648 6.96862 7.16117 7.22177 7.34314 7.57000 8.00300 8.90550 10.24935 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003543 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.414112 B = 7901.059070 C = 9072.929558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.152 4.152 5 C -0.071 4.071 6 C -0.078 4.078 7 C -0.080 4.080 8 C -0.147 4.147 9 C 0.159 3.841 10 N -1.014 6.014 11 S 2.717 3.283 12 O -1.004 7.004 13 O -1.003 7.003 14 C -1.017 5.017 15 H 0.102 0.898 16 C 0.134 3.866 17 N -0.847 5.847 18 Si 0.918 3.082 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.263 1.263 22 C 0.127 3.873 23 C -0.094 4.094 24 C -0.068 4.068 25 C -0.206 4.206 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.290 0.710 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -20.027 2.443 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.170 4.170 5 C -0.089 4.089 6 C -0.078 4.078 7 C -0.080 4.080 8 C -0.166 4.166 9 C 0.034 3.966 10 N -0.849 5.849 11 S 2.819 3.181 12 O -0.994 6.994 13 O -0.994 6.994 14 C -1.151 5.151 15 H 0.120 0.880 16 C -0.084 4.084 17 N -0.477 5.477 18 Si 0.742 3.258 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.187 1.187 22 C 0.001 3.999 23 C -0.133 4.133 24 C -0.086 4.086 25 C -0.225 4.225 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.823 -19.334 2.481 19.696 hybrid contribution -1.975 -0.117 -0.419 2.023 sum -4.799 -19.451 2.063 20.140 Atomic orbital electron populations 1.23037 0.78521 1.03742 1.01450 1.86040 1.21299 1.27205 1.88906 1.19097 0.92368 0.84000 0.97254 1.20322 0.91221 0.98541 1.06943 1.21106 0.99783 0.90534 0.97497 1.19082 0.92981 0.93188 1.02595 1.19396 0.98796 0.92967 0.96838 1.22797 0.98324 0.98250 0.97277 1.20041 0.97234 0.88034 0.91323 1.58398 1.84729 1.28760 1.13052 1.00450 0.76333 0.68541 0.72820 1.93354 1.75171 1.80600 1.50287 1.93350 1.88655 1.70693 1.46675 1.30619 1.20786 1.00593 1.63088 0.87997 1.24737 1.00551 0.93775 0.89354 1.69897 1.37682 1.00187 1.39897 0.86202 0.81840 0.78723 0.79030 1.19214 1.19983 1.18715 1.21362 0.97566 0.96395 0.84599 1.20805 1.00766 0.96323 0.95386 1.21127 0.93883 0.97118 0.96431 1.21165 0.99922 0.92274 1.09097 0.92646 0.92647 0.88399 0.85348 0.85176 0.87026 0.88473 0.91202 0.89923 0.91941 0.88560 0.90005 0.90754 0.85389 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.41 10.49 -19.34 -0.20 -3.61 16 3 C 0.12 1.35 6.69 -39.12 -0.26 1.09 16 4 C -0.15 -1.68 9.97 -39.49 -0.39 -2.08 16 5 C -0.07 -0.81 9.65 -39.22 -0.38 -1.19 16 6 C -0.08 -1.01 5.08 -104.99 -0.53 -1.54 16 7 C -0.08 -1.14 5.27 -102.82 -0.54 -1.68 16 8 C -0.15 -2.15 9.45 -36.23 -0.34 -2.49 16 9 C 0.16 2.71 6.50 -5.10 -0.03 2.68 16 10 N -1.01 -20.39 3.28 -114.53 -0.38 -20.76 16 11 S 2.72 71.66 5.01 -107.50 -0.54 71.12 16 12 O -1.00 -29.04 16.97 -57.17 -0.97 -30.01 16 13 O -1.00 -28.91 16.71 -57.17 -0.96 -29.87 16 14 C -1.02 -27.79 9.75 30.60 0.30 -27.49 16 15 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 16 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 17 N -0.85 -24.85 13.19 55.43 0.73 -24.12 16 18 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 22 C 0.13 2.14 6.53 -3.29 -0.02 2.12 16 23 C -0.09 -1.38 5.91 -27.92 -0.17 -1.55 16 24 C -0.07 -0.84 9.72 -39.22 -0.38 -1.22 16 25 C -0.21 -2.31 9.02 -39.49 -0.36 -2.66 16 26 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.42 7.94 -52.49 -0.42 1.00 16 32 H 0.10 1.75 7.47 -51.93 -0.39 1.36 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.72 7.06 -51.93 -0.37 1.35 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.13 1.15 6.28 -52.49 -0.33 0.82 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -35.18 350.37 -9.49 -44.67 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.22 Total: 3.01 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -2.22 Total: -31.22 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.36 Total: -44.89 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -2.13 Total: -63.49 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 71.66 SS G_CDS: -0.54 Total: 71.12 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.18 -9.49 -44.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.623 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds