Wall clock time and date at job start Tue Mar 31 2020 14:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35550 * 117.00205 * 2 1 4 4 C 1.38921 * 120.01158 * 359.97438 * 3 2 1 5 5 C 1.37688 * 120.24891 * 180.02562 * 4 3 2 6 6 C 1.39909 * 120.25922 * 359.97438 * 5 4 3 7 7 C 1.47965 * 119.99119 * 180.02562 * 6 5 4 8 8 C 1.40007 * 119.50020 * 180.02562 * 7 6 5 9 9 C 1.35983 * 121.19125 * 179.97438 * 8 7 6 10 10 C 1.41063 * 120.11082 * 0.03855 * 9 8 7 11 11 C 1.40417 * 120.48565 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99666 * 205.40636 * 11 10 9 13 13 C 1.40280 * 119.99857 * 25.41304 * 11 10 9 14 14 N 1.30643 * 120.00541 * 16.91415 * 13 11 10 15 15 Si 1.86801 * 119.99642 * 196.91123 * 13 11 10 16 16 H 1.48494 * 109.47259 * 265.18116 * 15 13 11 17 17 H 1.48500 * 109.47123 * 25.18052 * 15 13 11 18 18 H 1.48501 * 109.46997 * 145.17880 * 15 13 11 19 19 C 1.46650 * 119.02270 * 0.25691 * 10 9 8 20 20 C 1.43199 * 120.56102 * 179.70089 * 19 10 9 21 21 N 9.61160 * 95.74719 * 0.12796 * 2 1 3 22 22 C 1.39068 * 118.87395 * 359.44276 * 19 10 9 23 23 C 1.39224 * 120.01572 * 0.29845 * 6 5 4 24 24 C 1.39438 * 119.75624 * 359.42915 * 23 6 5 25 25 C 1.47440 * 120.12855 * 180.26853 * 24 23 6 26 26 O 1.21510 * 119.99744 * 180.27197 * 25 24 23 27 27 O 1.34749 * 119.99954 * 0.27987 * 25 24 23 28 28 H 1.09002 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47174 * 300.00199 * 1 2 3 30 30 H 1.09002 * 109.47356 * 59.99748 * 1 2 3 31 31 H 1.08006 * 119.87840 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.87060 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.40937 * 359.97438 * 8 7 6 34 34 H 1.07997 * 119.94636 * 180.02562 * 9 8 7 35 35 H 0.96993 * 120.00456 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.10028 * 180.26494 * 22 19 10 37 37 H 1.08001 * 120.11844 * 179.70916 * 23 6 5 38 38 H 0.96700 * 116.99569 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 1.2881 2.3730 -0.0005 5 6 1.9081 3.6024 -0.0011 6 6 3.3046 3.6877 -0.0005 7 6 3.9648 5.0119 -0.0005 8 6 5.3629 5.0852 -0.0006 9 6 6.0052 6.2838 -0.0011 10 6 5.2640 7.4840 -0.0008 11 6 5.9191 8.7259 -0.0008 12 1 5.4239 9.5976 0.4007 13 6 7.2168 8.8343 -0.5224 14 7 7.6911 7.8936 -1.2949 15 14 8.2667 10.3240 -0.1124 16 1 8.1275 11.3388 -1.1874 17 1 7.8183 10.9055 1.1783 18 1 9.6891 9.9118 -0.0019 19 6 3.7991 7.4154 0.0058 20 6 3.0142 8.6131 0.0127 21 7 2.3915 9.5633 0.0214 22 6 3.1851 6.1676 -0.0003 23 6 4.0733 2.5268 -0.0057 24 6 3.4461 1.2815 0.0006 25 6 4.2521 0.0469 0.0011 26 8 3.7030 -1.0371 0.0016 27 8 5.5976 0.1207 0.0012 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2096 2.3145 -0.0005 32 1 1.3142 4.5044 -0.0011 33 1 5.9418 4.1734 -0.0001 34 1 7.0847 6.3169 -0.0015 35 1 8.5885 7.9684 -1.6553 36 1 2.1076 6.0941 0.0001 37 1 5.1514 2.5907 -0.0101 38 1 6.0830 -0.7156 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241868898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:59 Heat of formation + Delta-G solvation = -75.609544 kcal Electronic energy + Delta-G solvation = -25216.389029 eV Core-core repulsion = 21374.065834 eV Total energy + Delta-G solvation = -3842.323195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64266 -40.34826 -39.71807 -38.19598 -36.91907 -36.90410 -35.80748 -32.92992 -32.60629 -31.48522 -30.23711 -28.38194 -26.86287 -25.81025 -24.06624 -23.34331 -22.68858 -21.48446 -19.62898 -19.18803 -18.86555 -18.73581 -17.41420 -17.22867 -16.89236 -16.86457 -16.29561 -16.21600 -15.59262 -15.36774 -15.11604 -14.75494 -14.57480 -14.46575 -14.05169 -13.84403 -13.75607 -13.71439 -13.45891 -13.25921 -12.95903 -12.82225 -12.66905 -12.64104 -12.44517 -12.27811 -12.16571 -11.85033 -11.68902 -11.47331 -11.24780 -11.16451 -10.10156 -9.89568 -9.47027 -8.92800 -8.60609 -6.47093 -0.24582 0.15510 0.49953 1.08730 1.37846 1.45246 1.51569 1.72857 2.04863 2.12948 2.17450 2.34562 2.38941 2.63691 2.96455 3.55772 3.71990 3.81627 3.92001 4.03165 4.24013 4.32909 4.42768 4.44345 4.47616 4.51178 4.72757 4.78774 4.92175 4.95962 5.09386 5.10730 5.17449 5.29613 5.44456 5.54179 5.64686 5.70122 5.89431 5.92895 6.11016 6.16726 6.42304 6.45798 6.61876 6.79366 6.98297 7.09700 8.03526 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003111 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.786242 B = 8999.510961 C =10527.164179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.313 6.313 3 C 0.157 3.843 4 C -0.203 4.203 5 C -0.056 4.056 6 C -0.053 4.053 7 C -0.186 4.186 8 C -0.056 4.056 9 C -0.179 4.179 10 C 0.133 3.867 11 C -0.452 4.452 12 H 0.072 0.928 13 C 0.045 3.955 14 N -0.775 5.775 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.262 1.262 18 H -0.252 1.252 19 C -0.208 4.208 20 C 0.305 3.695 21 N -0.529 5.529 22 C -0.005 4.005 23 C -0.041 4.041 24 C -0.178 4.178 25 C 0.532 3.468 26 O -0.535 6.535 27 O -0.508 6.508 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.303 0.697 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -13.369 1.470 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.226 6.226 3 C 0.110 3.890 4 C -0.221 4.221 5 C -0.074 4.074 6 C -0.053 4.053 7 C -0.187 4.187 8 C -0.075 4.075 9 C -0.198 4.198 10 C 0.128 3.872 11 C -0.478 4.478 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.397 5.397 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.186 1.186 18 H -0.175 1.175 19 C -0.214 4.214 20 C -0.003 4.003 21 N -0.208 5.208 22 C -0.026 4.026 23 C -0.059 4.059 24 C -0.180 4.180 25 C 0.378 3.622 26 O -0.427 6.427 27 O -0.322 6.322 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.183 0.817 32 H 0.166 0.834 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -4.967 -12.119 1.320 13.163 hybrid contribution 0.943 0.015 -0.024 0.943 sum -4.024 -12.104 1.296 12.821 Atomic orbital electron populations 1.23451 0.76457 1.05582 1.02755 1.86237 1.23340 1.25923 1.87060 1.19180 0.90463 0.85630 0.93754 1.21325 1.01424 0.90486 1.08892 1.21525 0.93609 0.98224 0.94079 1.18727 0.93190 0.91929 1.01449 1.17890 0.92601 0.90585 1.17617 1.20797 0.93564 0.97360 0.95769 1.20890 0.99639 0.91216 1.08046 1.18780 0.88861 0.93982 0.85624 1.19919 0.99440 0.95904 1.32570 0.90961 1.26777 0.98283 1.00834 0.91827 1.69693 1.18231 1.33078 1.18664 0.85244 0.77891 0.77345 0.79870 1.18973 1.18575 1.17513 1.16948 0.91094 0.86802 1.26537 1.25952 0.91201 0.92520 0.90657 1.81015 1.12296 1.11367 1.16164 1.20819 0.98636 0.89669 0.93436 1.21416 1.00865 0.89228 0.94372 1.18409 0.90135 0.91800 1.17627 1.20672 0.81128 0.88645 0.71790 1.90881 1.73309 1.30835 1.47653 1.84559 1.18901 1.43218 1.85491 0.86754 0.91070 0.91115 0.81706 0.83444 0.85938 0.86393 0.88487 0.85273 0.83446 0.70822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.31 -8.17 8.55 -67.58 -0.58 -8.75 16 3 C 0.16 4.21 6.71 22.95 0.15 4.36 16 4 C -0.20 -4.53 9.01 22.30 0.20 -4.32 16 5 C -0.06 -1.42 9.40 22.54 0.21 -1.21 16 6 C -0.05 -1.58 5.88 -20.06 -0.12 -1.70 16 7 C -0.19 -6.57 5.88 -19.99 -0.12 -6.69 16 8 C -0.06 -2.10 9.29 22.17 0.21 -1.90 16 9 C -0.18 -7.74 8.62 22.44 0.19 -7.55 16 10 C 0.13 6.22 5.73 -19.86 -0.11 6.11 16 11 C -0.45 -21.65 8.55 23.30 0.20 -21.45 16 12 H 0.07 3.57 7.38 -2.91 -0.02 3.55 16 13 C 0.05 1.97 5.16 85.37 0.44 2.41 16 14 N -0.77 -33.89 10.96 21.88 0.24 -33.65 16 15 Si 0.98 33.62 29.59 68.60 2.03 35.65 16 16 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 17 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 18 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 19 C -0.21 -9.07 5.93 -19.64 -0.12 -9.19 16 20 C 0.31 13.85 14.29 88.33 1.26 15.11 16 21 N -0.53 -24.72 18.54 19.00 0.35 -24.37 16 22 C -0.01 -0.19 9.12 22.75 0.21 0.02 16 23 C -0.04 -1.18 8.98 22.80 0.20 -0.97 16 24 C -0.18 -5.14 5.88 -20.05 -0.12 -5.26 16 25 C 0.53 15.10 8.26 70.25 0.58 15.68 16 26 O -0.54 -17.70 15.93 26.82 0.43 -17.27 16 27 O -0.51 -10.91 12.67 -56.60 -0.72 -11.63 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 30 H 0.07 0.85 7.65 -2.39 -0.02 0.84 16 31 H 0.17 2.51 6.28 -2.91 -0.02 2.49 16 32 H 0.15 3.19 6.12 -2.91 -0.02 3.17 16 33 H 0.12 3.95 6.08 -2.91 -0.02 3.93 16 34 H 0.12 5.24 6.20 -2.91 -0.02 5.22 16 35 H 0.30 11.69 8.29 -92.71 -0.77 10.92 16 36 H 0.13 3.97 6.11 -2.91 -0.02 3.95 16 37 H 0.15 4.04 5.66 -2.91 -0.02 4.02 16 38 H 0.43 4.91 9.11 -74.06 -0.67 4.23 16 Total: -1.00 -61.56 338.73 6.64 -54.92 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.49 Total: 20.37 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.39 Total: -15.27 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.59 Total: -58.02 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.87 Total: -37.65 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Total: -61.56 6.64 -54.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241868898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.691 kcal (2) G-P(sol) polarization free energy of solvation -61.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds