Wall clock time and date at job start Tue Mar 31 2020 14:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35596 * 117.00034 * 2 1 4 4 C 1.38822 * 120.02973 * 359.97438 * 3 2 1 5 5 C 1.37780 * 120.22600 * 180.02562 * 4 3 2 6 6 C 1.39699 * 120.28021 * 0.02562 * 5 4 3 7 7 C 1.48289 * 119.97255 * 179.97438 * 6 5 4 8 8 C 1.39837 * 119.53503 * 180.02562 * 7 6 5 9 9 C 1.37700 * 121.17243 * 179.97438 * 8 7 6 10 10 C 1.39591 * 120.18130 * 359.97300 * 9 8 7 11 11 C 1.43208 * 120.45431 * 180.02562 * 10 9 8 12 12 N 9.63418 * 147.98534 * 179.91430 * 3 1 2 13 13 C 1.46543 * 119.09499 * 0.02562 * 10 9 8 14 14 C 1.40845 * 120.55634 * 180.02562 * 13 10 9 15 15 H 1.08005 * 119.99671 * 24.38969 * 14 13 10 16 16 C 1.40231 * 120.00295 * 204.38754 * 14 13 10 17 17 N 1.30662 * 119.99957 * 17.28693 * 16 14 13 18 18 Si 1.86800 * 119.99847 * 197.28888 * 16 14 13 19 19 H 1.48492 * 109.47204 * 90.00258 * 18 16 14 20 20 H 1.48506 * 109.47017 * 210.00032 * 18 16 14 21 21 H 1.48496 * 109.47527 * 329.99619 * 18 16 14 22 22 C 1.38619 * 119.53922 * 359.72039 * 7 6 5 23 23 C 1.38959 * 120.04798 * 359.97438 * 6 5 4 24 24 C 1.39531 * 119.78182 * 0.02562 * 23 6 5 25 25 C 1.47428 * 120.14035 * 179.97438 * 24 23 6 26 26 O 1.21504 * 120.00050 * 180.02562 * 25 24 23 27 27 O 1.34742 * 119.99988 * 0.02562 * 25 24 23 28 28 H 1.09004 * 109.47243 * 300.00145 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00337 * 1 2 3 30 30 H 1.09000 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.88449 * 359.75670 * 4 3 2 32 32 H 1.07998 * 119.86062 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.41270 * 359.95202 * 8 7 6 34 34 H 1.07995 * 119.91031 * 179.97438 * 9 8 7 35 35 H 0.96998 * 119.99789 * 184.64789 * 17 16 14 36 36 H 1.08003 * 120.13529 * 0.02562 * 22 7 6 37 37 H 1.08008 * 120.11127 * 179.97438 * 23 6 5 38 38 H 0.96700 * 117.00277 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2891 2.3728 -0.0005 5 6 1.9104 3.6026 -0.0011 6 6 3.3048 3.6873 -0.0016 7 6 3.9664 5.0144 -0.0028 8 6 5.3628 5.0885 -0.0038 9 6 6.0121 6.3028 -0.0055 10 6 5.2789 7.4907 -0.0066 11 6 5.9482 8.7568 -0.0088 12 7 6.4791 9.7611 -0.0076 13 6 3.8150 7.4245 -0.0055 14 6 3.0449 8.6037 -0.0072 15 1 3.4626 9.5209 -0.3954 16 6 1.7357 8.5870 0.4952 17 7 1.3420 7.6037 1.2602 18 14 0.5547 9.9706 0.0706 19 1 -0.1828 9.6280 -1.1719 20 1 -0.4105 10.1567 1.1838 21 1 1.3184 11.2270 -0.1375 22 6 3.1920 6.1641 -0.0092 23 6 4.0723 2.5289 -0.0011 24 6 3.4455 1.2823 -0.0005 25 6 4.2520 0.0481 -0.0005 26 8 3.7035 -1.0361 -0.0005 27 8 5.5974 0.1226 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2107 2.3147 -0.0049 32 1 1.3169 4.5049 -0.0019 33 1 5.9423 4.1772 -0.0030 34 1 7.0915 6.3363 -0.0059 35 1 0.4184 7.5565 1.5525 36 1 2.1144 6.0920 -0.0129 37 1 5.1505 2.5932 -0.0019 38 1 6.0833 -0.7135 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241869024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:48 Heat of formation + Delta-G solvation = -60.756890 kcal Electronic energy + Delta-G solvation = -25481.123825 eV Core-core repulsion = 21639.444689 eV Total energy + Delta-G solvation = -3841.679136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61870 -39.30768 -38.33133 -36.89298 -35.88434 -35.11305 -34.17682 -31.83281 -31.32063 -29.97441 -28.53493 -27.12839 -26.00637 -24.48610 -22.90666 -22.17439 -20.82138 -20.27485 -18.33426 -17.88835 -17.70844 -17.30389 -16.46963 -15.94951 -15.94113 -15.39060 -15.24839 -14.82461 -14.47806 -14.05995 -13.62646 -13.40681 -13.10820 -12.90700 -12.82440 -12.75660 -12.60602 -12.10486 -11.85397 -11.70873 -11.52872 -11.45534 -11.43482 -11.41846 -11.21048 -11.12790 -10.78116 -10.57918 -10.36551 -10.06385 -9.74967 -9.56362 -9.02514 -8.59536 -7.85011 -7.31257 -7.04647 -4.79606 0.84056 1.21085 2.18630 2.57983 2.76629 2.88110 2.92484 3.01906 3.10938 3.19454 3.64803 3.77327 3.88078 4.31429 4.39749 4.78145 4.87820 5.06058 5.06230 5.11859 5.32210 5.36466 5.39912 5.42992 5.53099 5.61067 5.87535 6.02142 6.15385 6.26961 6.33968 6.52128 6.55149 6.64739 6.73659 6.83697 6.92694 7.12774 7.31850 7.41697 7.58325 7.68029 7.79347 8.03344 8.12479 8.35465 8.45733 8.78303 9.67911 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.003742 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.835288 B = 7479.843956 C = 9464.675885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.289 6.289 3 C 0.176 3.824 4 C -0.222 4.222 5 C -0.030 4.030 6 C -0.069 4.069 7 C -0.015 4.015 8 C -0.238 4.238 9 C -0.026 4.026 10 C -0.184 4.184 11 C 0.299 3.701 12 N -0.509 5.509 13 C 0.151 3.849 14 C -0.429 4.429 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.767 5.767 18 Si 0.912 3.088 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.146 4.146 23 C -0.022 4.022 24 C -0.169 4.169 25 C 0.529 3.471 26 O -0.506 6.506 27 O -0.515 6.515 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.290 0.710 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 -13.256 -1.651 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.201 6.201 3 C 0.128 3.872 4 C -0.240 4.240 5 C -0.048 4.048 6 C -0.069 4.069 7 C -0.016 4.016 8 C -0.257 4.257 9 C -0.047 4.047 10 C -0.190 4.190 11 C -0.011 4.011 12 N -0.188 5.188 13 C 0.145 3.855 14 C -0.456 4.456 15 H 0.104 0.896 16 C -0.145 4.145 17 N -0.389 5.389 18 Si 0.735 3.265 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.165 4.165 23 C -0.040 4.040 24 C -0.171 4.171 25 C 0.374 3.626 26 O -0.395 6.395 27 O -0.326 6.326 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.145 -11.881 -1.441 12.666 hybrid contribution -0.788 -0.242 -0.032 0.824 sum -4.932 -12.123 -1.473 13.171 Atomic orbital electron populations 1.23137 0.78726 1.03971 1.01488 1.86270 1.20883 1.25870 1.87072 1.18995 0.90435 0.84878 0.92851 1.21110 1.00141 0.91637 1.11139 1.21526 0.94442 0.97463 0.91375 1.18989 0.92601 0.93339 1.01958 1.18379 0.93019 0.90308 0.99888 1.20149 0.92861 0.96135 1.16576 1.20382 0.97330 0.91206 0.95760 1.17001 0.92199 0.85371 1.24474 1.25809 0.91425 0.92622 0.91197 1.81026 1.11302 1.11435 1.15047 1.18334 0.88185 0.93036 0.85929 1.19796 0.96839 0.96831 1.32170 0.89579 1.26065 0.99078 0.97586 0.91723 1.69716 1.18775 1.29903 1.20538 0.86190 0.79504 0.81378 0.79389 1.18613 1.19748 1.18082 1.21382 0.99508 0.90151 1.05443 1.21503 1.00880 0.89317 0.92304 1.18212 0.89283 0.91745 1.17816 1.20628 0.80371 0.89095 0.72479 1.90901 1.72596 1.29960 1.46092 1.84594 1.20184 1.41569 1.86280 0.92451 0.92490 0.88256 0.84693 0.83998 0.87949 0.88070 0.89827 0.85115 0.83414 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.29 -4.07 8.55 -40.43 -0.35 -4.42 16 3 C 0.18 2.56 6.70 -38.60 -0.26 2.30 16 4 C -0.22 -2.95 9.01 -39.53 -0.36 -3.31 16 5 C -0.03 -0.46 9.39 -39.20 -0.37 -0.82 16 6 C -0.07 -1.14 5.87 -104.95 -0.62 -1.76 16 7 C -0.01 -0.28 5.86 -105.02 -0.62 -0.90 16 8 C -0.24 -4.38 9.36 -39.18 -0.37 -4.75 16 9 C -0.03 -0.51 9.74 -39.27 -0.38 -0.89 16 10 C -0.18 -4.07 5.95 -104.12 -0.62 -4.69 16 11 C 0.30 6.86 14.28 -22.47 -0.32 6.54 16 12 N -0.51 -12.07 18.54 41.84 0.78 -11.29 16 13 C 0.15 3.47 5.73 -104.68 -0.60 2.87 16 14 C -0.43 -10.05 8.58 -37.85 -0.32 -10.37 16 15 H 0.09 2.07 7.37 -52.48 -0.39 1.68 16 16 C 0.08 1.68 5.16 -17.30 -0.09 1.59 16 17 N -0.77 -16.45 10.95 55.56 0.61 -15.84 16 18 Si 0.91 16.48 29.60 -169.99 -5.03 11.45 16 19 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 20 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 22 C -0.15 -3.09 8.06 -38.55 -0.31 -3.40 16 23 C -0.02 -0.33 8.97 -38.83 -0.35 -0.68 16 24 C -0.17 -2.55 5.88 -104.90 -0.62 -3.17 16 25 C 0.53 7.69 8.26 34.47 0.28 7.98 16 26 O -0.51 -8.49 15.93 -26.61 -0.42 -8.91 16 27 O -0.51 -5.72 12.67 -40.61 -0.51 -6.24 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.41 6.28 -52.49 -0.33 1.08 16 32 H 0.14 2.14 6.12 -52.49 -0.32 1.82 16 33 H 0.10 1.62 6.08 -52.49 -0.32 1.30 16 34 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.29 5.55 8.30 -40.82 -0.34 5.22 16 36 H 0.13 2.72 4.23 -52.48 -0.22 2.50 16 37 H 0.15 2.07 5.66 -52.48 -0.30 1.77 16 38 H 0.41 2.53 9.11 45.56 0.42 2.95 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -28.44 338.84 -6.98 -35.42 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -2.24 Total: 7.01 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -4.92 Total: -12.28 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 1.38 Total: -27.13 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.28 Total: -19.56 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.44 -6.98 -35.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241869024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.340 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds