Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35591 * 117.00010 * 2 1 4 4 C 1.38831 * 119.98532 * 0.02562 * 3 2 1 5 5 C 1.37732 * 120.24587 * 179.97438 * 4 3 2 6 6 C 1.39967 * 120.20961 * 0.02562 * 5 4 3 7 7 C 1.47509 * 120.01294 * 180.02562 * 6 5 4 8 8 O 1.21500 * 120.00052 * 179.97438 * 7 6 5 9 9 O 1.34746 * 119.99821 * 359.97438 * 7 6 5 10 10 C 1.39441 * 119.97132 * 359.71461 * 6 5 4 11 11 C 1.39178 * 119.75872 * 0.53268 * 10 6 5 12 12 C 1.47929 * 120.10785 * 179.76819 * 11 10 6 13 13 C 1.40020 * 119.50161 * 129.72376 * 12 11 10 14 14 C 1.35979 * 121.19037 * 180.02562 * 13 12 11 15 15 C 1.41055 * 120.11166 * 0.02562 * 14 13 12 16 16 C 1.40422 * 120.48619 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99696 * 208.76680 * 16 15 14 18 18 C 1.40286 * 120.00187 * 28.76172 * 16 15 14 19 19 N 1.30638 * 120.00119 * 197.55592 * 18 16 15 20 20 Si 1.86805 * 119.99589 * 17.55048 * 18 16 15 21 21 H 1.48493 * 109.47339 * 269.99920 * 20 18 16 22 22 H 1.48501 * 109.47279 * 30.00408 * 20 18 16 23 23 H 1.48505 * 109.46793 * 149.99693 * 20 18 16 24 24 C 1.46657 * 119.02757 * 0.22719 * 15 14 13 25 25 C 1.43202 * 120.55994 * 179.74888 * 24 15 14 26 26 N 7.20808 * 154.91477 * 239.08842 * 2 1 3 27 27 C 1.39059 * 118.87511 * 359.51532 * 24 15 14 28 28 H 1.09008 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47390 * 299.99775 * 1 2 3 30 30 H 1.08996 * 109.47095 * 60.00322 * 1 2 3 31 31 H 1.08005 * 119.87790 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.89428 * 179.97438 * 5 4 3 33 33 H 0.96695 * 116.99883 * 180.02562 * 9 7 6 34 34 H 1.08002 * 120.12191 * 180.28134 * 10 6 5 35 35 H 1.08001 * 119.40452 * 359.97438 * 13 12 11 36 36 H 1.07997 * 119.94342 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00446 * 355.44543 * 19 18 16 38 38 H 1.07998 * 120.10593 * 180.21793 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2881 2.3723 0.0005 5 6 1.9078 3.6023 0.0011 6 6 3.3049 3.6870 0.0005 7 6 3.9641 5.0066 0.0017 8 8 5.1769 5.0799 0.0017 9 8 3.2212 6.1308 0.0027 10 6 4.0734 2.5235 0.0055 11 6 3.4459 1.2812 -0.0003 12 6 4.2536 0.0418 -0.0003 13 6 3.9739 -0.9635 0.9332 14 6 4.6947 -2.1161 0.9643 15 6 5.7469 -2.3176 0.0466 16 6 6.4967 -3.5046 0.0720 17 1 7.5256 -3.5004 -0.2565 18 6 5.9096 -4.6957 0.5241 19 7 6.6633 -5.7036 0.8745 20 14 4.0499 -4.8405 0.6251 21 1 3.5909 -4.3969 1.9658 22 1 3.4293 -3.9855 -0.4185 23 1 3.6510 -6.2545 0.4080 24 6 6.0498 -1.2669 -0.9307 25 6 7.1142 -1.4348 -1.8739 26 7 7.9572 -1.5699 -2.6219 27 6 5.2827 -0.1071 -0.9292 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2097 2.3132 0.0014 32 1 1.3139 4.5043 0.0011 33 1 3.6980 6.9720 0.0031 34 1 5.1516 2.5860 0.0097 35 1 3.1716 -0.8207 1.6420 36 1 4.4613 -2.8784 1.6927 37 1 7.6251 -5.6528 0.7601 38 1 5.4861 0.6779 -1.6425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242390955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = -65.767127 kcal Electronic energy + Delta-G solvation = -25631.655342 eV Core-core repulsion = 21789.758946 eV Total energy + Delta-G solvation = -3841.896396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57377 -39.75375 -38.04355 -37.09143 -36.08937 -35.28898 -34.33408 -32.19975 -30.60672 -30.24255 -29.41735 -27.54595 -25.41712 -24.15642 -22.90283 -21.96120 -21.08749 -20.80679 -18.54957 -18.38755 -18.07690 -17.42672 -16.59923 -15.87872 -15.82736 -15.57390 -15.05883 -14.73220 -14.55991 -14.24866 -13.83035 -13.64284 -13.54000 -13.22021 -12.86478 -12.62832 -12.56189 -12.46798 -12.03359 -11.91295 -11.75942 -11.66496 -11.28841 -11.26863 -11.09571 -11.00632 -10.67006 -10.58964 -10.44164 -10.07580 -9.74139 -9.33072 -8.99842 -8.39983 -7.99163 -7.84993 -7.45443 -4.92560 0.78015 1.27491 1.98481 2.34461 2.63910 2.97968 3.02109 3.17986 3.27789 3.37846 3.72786 3.77645 3.79064 4.04217 4.38067 4.68647 4.76677 4.97735 5.07435 5.09628 5.15882 5.20278 5.28530 5.42236 5.44751 5.66052 5.73245 5.92686 6.05797 6.10891 6.24881 6.34988 6.39496 6.46792 6.54246 6.68804 6.97171 7.08751 7.20971 7.28796 7.42813 7.51675 7.59676 7.85343 7.98239 8.08842 8.32460 8.67340 9.56821 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003993 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.010819 B = 7010.807995 C = 8485.234060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.292 6.292 3 C 0.163 3.837 4 C -0.224 4.224 5 C -0.039 4.039 6 C -0.169 4.169 7 C 0.530 3.470 8 O -0.518 6.518 9 O -0.517 6.517 10 C -0.022 4.022 11 C -0.035 4.035 12 C -0.203 4.203 13 C -0.008 4.008 14 C -0.245 4.245 15 C 0.136 3.864 16 C -0.469 4.469 17 H 0.085 0.915 18 C 0.040 3.960 19 N -0.778 5.778 20 Si 1.073 2.927 21 H -0.269 1.269 22 H -0.253 1.253 23 H -0.286 1.286 24 C -0.178 4.178 25 C 0.297 3.703 26 N -0.499 5.499 27 C 0.010 3.990 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.410 0.590 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.294 0.706 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 13.519 2.153 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.204 6.204 3 C 0.116 3.884 4 C -0.243 4.243 5 C -0.057 4.057 6 C -0.171 4.171 7 C 0.375 3.625 8 O -0.408 6.408 9 O -0.329 6.329 10 C -0.041 4.041 11 C -0.035 4.035 12 C -0.204 4.204 13 C -0.027 4.027 14 C -0.264 4.264 15 C 0.130 3.870 16 C -0.495 4.495 17 H 0.103 0.897 18 C -0.184 4.184 19 N -0.397 5.397 20 Si 0.897 3.103 21 H -0.196 1.196 22 H -0.177 1.177 23 H -0.213 1.213 24 C -0.183 4.183 25 C -0.013 4.013 26 N -0.178 5.178 27 C -0.011 4.011 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.268 0.732 34 H 0.161 0.839 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.194 11.641 1.460 19.196 hybrid contribution 1.221 1.760 -0.099 2.144 sum -13.973 13.401 1.360 19.408 Atomic orbital electron populations 1.23135 0.78795 1.04223 1.01139 1.86209 1.20806 1.26305 1.87040 1.19534 0.91892 0.84261 0.92735 1.21090 1.00119 0.91895 1.11157 1.21073 0.92940 0.97518 0.94207 1.18773 0.93751 0.89642 1.14894 1.20904 0.84939 0.84738 0.71871 1.90902 1.15307 1.87833 1.46732 1.84562 1.44681 1.17420 1.86242 1.21306 1.00526 0.89039 0.93193 1.18124 0.88987 0.93427 1.02985 1.17433 1.02910 0.95286 1.04778 1.20305 0.95411 0.92107 0.94883 1.20703 1.02834 0.99482 1.03377 1.18542 0.89882 0.91109 0.87429 1.20922 1.00124 0.93936 1.34542 0.89745 1.27710 1.09527 0.91702 0.89458 1.70444 1.09644 1.33514 1.26110 0.83612 0.70982 0.76383 0.79330 1.19555 1.17678 1.21262 1.16704 1.00698 1.00321 1.00594 1.25650 0.92140 0.91546 0.91950 1.81003 1.13008 1.10435 1.13354 1.20628 0.91576 0.94067 0.94811 0.88037 0.92642 0.92657 0.84949 0.84817 0.73162 0.83887 0.88027 0.86746 0.89397 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -3.98 8.76 -18.47 -0.16 -4.14 16 3 C 0.16 2.25 6.58 -38.58 -0.25 2.00 16 4 C -0.22 -2.46 9.01 -39.55 -0.36 -2.82 16 5 C -0.04 -0.43 9.60 -39.12 -0.38 -0.81 16 6 C -0.17 -2.24 5.87 -105.02 -0.62 -2.85 16 7 C 0.53 6.83 8.26 34.51 0.29 7.11 16 8 O -0.52 -8.28 17.12 -19.27 -0.33 -8.61 16 9 O -0.52 -4.68 12.66 -40.62 -0.51 -5.20 16 10 C -0.02 -0.34 9.01 -38.78 -0.35 -0.68 16 11 C -0.03 -0.55 5.45 -104.79 -0.57 -1.12 16 12 C -0.20 -3.74 5.29 -104.82 -0.55 -4.30 16 13 C -0.01 -0.15 8.61 -39.72 -0.34 -0.50 16 14 C -0.25 -5.15 7.21 -39.32 -0.28 -5.43 16 15 C 0.14 3.15 5.30 -104.61 -0.55 2.60 16 16 C -0.47 -11.59 8.90 -37.99 -0.34 -11.93 16 17 H 0.08 2.24 7.61 -52.49 -0.40 1.84 16 18 C 0.04 0.96 5.42 -17.29 -0.09 0.87 16 19 N -0.78 -19.04 13.64 55.57 0.76 -18.28 16 20 Si 1.07 21.51 24.90 -169.99 -4.23 17.28 16 21 H -0.27 -4.97 6.44 56.52 0.36 -4.61 16 22 H -0.25 -5.02 7.02 56.52 0.40 -4.62 16 23 H -0.29 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.18 -3.95 5.93 -104.27 -0.62 -4.57 16 25 C 0.30 6.95 14.34 -22.50 -0.32 6.63 16 26 N -0.50 -12.11 18.53 41.80 0.77 -11.34 16 27 C 0.01 0.20 9.18 -38.83 -0.36 -0.16 16 28 H 0.10 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 30 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 31 H 0.13 1.07 6.27 -52.48 -0.33 0.74 16 32 H 0.13 1.17 7.59 -52.49 -0.40 0.77 16 33 H 0.41 1.87 9.11 45.56 0.42 2.29 16 34 H 0.14 2.23 7.60 -52.49 -0.40 1.83 16 35 H 0.10 1.71 7.60 -52.49 -0.40 1.32 16 36 H 0.12 2.33 4.39 -52.49 -0.23 2.10 16 37 H 0.29 7.06 8.72 -40.82 -0.36 6.70 16 38 H 0.11 1.86 8.02 -52.49 -0.42 1.44 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -29.20 340.31 -5.86 -35.06 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.57 Total: 4.88 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -4.71 Total: -14.78 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 1.53 Total: -29.62 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -1.01 Total: -17.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.23 Total: 17.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.20 -5.86 -35.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242390955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.707 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds