Wall clock time and date at job start Tue Mar 31 2020 14:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35591 * 117.00010 * 2 1 4 4 C 1.38831 * 119.98532 * 0.02562 * 3 2 1 5 5 C 1.37732 * 120.24587 * 179.97438 * 4 3 2 6 6 C 1.39967 * 120.20961 * 0.02562 * 5 4 3 7 7 C 1.47509 * 120.01294 * 180.02562 * 6 5 4 8 8 O 1.21500 * 120.00052 * 179.97438 * 7 6 5 9 9 O 1.34746 * 119.99821 * 359.97438 * 7 6 5 10 10 C 1.39441 * 119.97132 * 359.71461 * 6 5 4 11 11 C 1.39178 * 119.75872 * 0.53268 * 10 6 5 12 12 C 1.47929 * 120.10785 * 179.76819 * 11 10 6 13 13 C 1.40020 * 119.50161 * 129.72376 * 12 11 10 14 14 C 1.35979 * 121.19037 * 180.02562 * 13 12 11 15 15 C 1.41055 * 120.11166 * 0.02562 * 14 13 12 16 16 C 1.40422 * 120.48619 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99696 * 208.76680 * 16 15 14 18 18 C 1.40286 * 120.00187 * 28.76172 * 16 15 14 19 19 N 1.30638 * 120.00119 * 197.55592 * 18 16 15 20 20 Si 1.86805 * 119.99589 * 17.55048 * 18 16 15 21 21 H 1.48493 * 109.47339 * 269.99920 * 20 18 16 22 22 H 1.48501 * 109.47279 * 30.00408 * 20 18 16 23 23 H 1.48505 * 109.46793 * 149.99693 * 20 18 16 24 24 C 1.46657 * 119.02757 * 0.22719 * 15 14 13 25 25 C 1.43202 * 120.55994 * 179.74888 * 24 15 14 26 26 N 7.20808 * 154.91477 * 239.08842 * 2 1 3 27 27 C 1.39059 * 118.87511 * 359.51532 * 24 15 14 28 28 H 1.09008 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47390 * 299.99775 * 1 2 3 30 30 H 1.08996 * 109.47095 * 60.00322 * 1 2 3 31 31 H 1.08005 * 119.87790 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.89428 * 179.97438 * 5 4 3 33 33 H 0.96695 * 116.99883 * 180.02562 * 9 7 6 34 34 H 1.08002 * 120.12191 * 180.28134 * 10 6 5 35 35 H 1.08001 * 119.40452 * 359.97438 * 13 12 11 36 36 H 1.07997 * 119.94342 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00446 * 355.44543 * 19 18 16 38 38 H 1.07998 * 120.10593 * 180.21793 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2881 2.3723 0.0005 5 6 1.9078 3.6023 0.0011 6 6 3.3049 3.6870 0.0005 7 6 3.9641 5.0066 0.0017 8 8 5.1769 5.0799 0.0017 9 8 3.2212 6.1308 0.0027 10 6 4.0734 2.5235 0.0055 11 6 3.4459 1.2812 -0.0003 12 6 4.2536 0.0418 -0.0003 13 6 3.9739 -0.9635 0.9332 14 6 4.6947 -2.1161 0.9643 15 6 5.7469 -2.3176 0.0466 16 6 6.4967 -3.5046 0.0720 17 1 7.5256 -3.5004 -0.2565 18 6 5.9096 -4.6957 0.5241 19 7 6.6633 -5.7036 0.8745 20 14 4.0499 -4.8405 0.6251 21 1 3.5909 -4.3969 1.9658 22 1 3.4293 -3.9855 -0.4185 23 1 3.6510 -6.2545 0.4080 24 6 6.0498 -1.2669 -0.9307 25 6 7.1142 -1.4348 -1.8739 26 7 7.9572 -1.5699 -2.6219 27 6 5.2827 -0.1071 -0.9292 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2097 2.3132 0.0014 32 1 1.3139 4.5043 0.0011 33 1 3.6980 6.9720 0.0031 34 1 5.1516 2.5860 0.0097 35 1 3.1716 -0.8207 1.6420 36 1 4.4613 -2.8784 1.6927 37 1 7.6251 -5.6528 0.7601 38 1 5.4861 0.6779 -1.6425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242390955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:40 Heat of formation + Delta-G solvation = -83.259811 kcal Electronic energy + Delta-G solvation = -25632.413882 eV Core-core repulsion = 21789.758946 eV Total energy + Delta-G solvation = -3842.654936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57152 -40.73647 -39.59635 -38.11793 -37.14245 -36.99952 -36.00503 -33.59952 -32.02466 -31.46559 -30.83115 -28.29423 -26.97845 -25.11589 -24.33965 -23.46005 -22.48218 -21.88689 -20.25032 -19.63093 -18.99792 -18.51626 -17.73813 -16.95639 -16.79590 -16.64879 -16.47564 -16.25084 -15.89909 -15.63297 -15.05106 -14.86782 -14.69358 -14.62707 -14.37757 -14.16726 -13.84920 -13.70639 -13.57788 -13.34204 -12.99669 -12.78020 -12.72464 -12.55240 -12.44677 -12.13245 -11.92831 -11.82873 -11.69615 -11.56554 -11.45766 -10.93008 -10.19227 -9.71192 -9.63515 -9.44546 -8.95221 -6.74075 -0.21430 0.14128 0.30675 0.85054 1.40112 1.56145 1.61218 1.82218 1.89584 2.11898 2.14655 2.24053 2.44359 2.57954 2.81901 3.38133 3.45755 3.76973 3.90927 4.13314 4.13945 4.25017 4.29304 4.46703 4.55094 4.56179 4.62880 4.79881 4.84438 4.88771 4.97113 5.15215 5.21297 5.25556 5.30448 5.35628 5.53387 5.61524 5.64395 5.73246 5.87853 5.91558 6.17820 6.37408 6.50785 6.58658 6.80864 7.03751 7.75245 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003993 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.010819 B = 7010.807995 C = 8485.234060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.168 3.832 4 C -0.213 4.213 5 C -0.015 4.015 6 C -0.184 4.184 7 C 0.536 3.464 8 O -0.559 6.559 9 O -0.501 6.501 10 C -0.027 4.027 11 C -0.072 4.072 12 C -0.173 4.173 13 C -0.003 4.003 14 C -0.249 4.249 15 C 0.128 3.872 16 C -0.511 4.511 17 H 0.044 0.956 18 C 0.014 3.986 19 N -0.808 5.808 20 Si 1.100 2.900 21 H -0.237 1.237 22 H -0.251 1.251 23 H -0.281 1.281 24 C -0.196 4.196 25 C 0.301 3.699 26 N -0.525 5.525 27 C 0.004 3.996 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.432 0.568 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.282 0.718 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.758 16.683 2.958 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.230 6.230 3 C 0.121 3.879 4 C -0.231 4.231 5 C -0.033 4.033 6 C -0.186 4.186 7 C 0.383 3.617 8 O -0.453 6.453 9 O -0.315 6.315 10 C -0.045 4.045 11 C -0.072 4.072 12 C -0.174 4.174 13 C -0.021 4.021 14 C -0.267 4.267 15 C 0.123 3.877 16 C -0.539 4.539 17 H 0.062 0.938 18 C -0.204 4.204 19 N -0.429 5.429 20 Si 0.918 3.082 21 H -0.162 1.162 22 H -0.174 1.174 23 H -0.207 1.207 24 C -0.202 4.202 25 C -0.008 4.008 26 N -0.205 5.205 27 C -0.017 4.017 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.189 0.811 32 H 0.185 0.815 33 H 0.293 0.707 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.351 14.847 2.271 25.293 hybrid contribution 2.580 1.201 -0.390 2.872 sum -17.771 16.048 1.880 24.018 Atomic orbital electron populations 1.23501 0.76045 1.05792 1.03019 1.86165 1.23706 1.26428 1.86751 1.19565 0.91091 0.85542 0.91688 1.21458 1.01859 0.90506 1.09265 1.21465 0.91905 0.98949 0.91013 1.18864 0.94863 0.89193 1.15641 1.20859 0.84347 0.85556 0.70897 1.90898 1.17090 1.88460 1.48803 1.84492 1.44058 1.17662 1.85265 1.21162 0.99993 0.89825 0.93519 1.17954 0.90158 0.92152 1.06965 1.17825 1.01196 0.95996 1.02358 1.20647 0.95432 0.91078 0.94985 1.20850 1.02304 1.00638 1.02936 1.18706 0.90534 0.90614 0.87860 1.20739 0.99027 0.95761 1.38358 0.93751 1.28795 1.12434 0.90841 0.88287 1.70518 1.09044 1.34282 1.29037 0.83358 0.67159 0.76791 0.80931 1.16204 1.17448 1.20741 1.16972 1.01082 1.01422 1.00678 1.26010 0.92123 0.90873 0.91789 1.80967 1.13779 1.11288 1.14429 1.20846 0.91703 0.93502 0.95659 0.86931 0.90412 0.90953 0.81065 0.81546 0.70664 0.85710 0.84998 0.85899 0.90654 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -7.24 8.76 -89.00 -0.78 -8.02 16 3 C 0.17 3.92 6.58 22.92 0.15 4.07 16 4 C -0.21 -3.41 9.01 22.29 0.20 -3.21 16 5 C -0.02 -0.25 9.60 22.57 0.22 -0.04 16 6 C -0.18 -4.27 5.87 -20.12 -0.12 -4.39 16 7 C 0.54 12.40 8.26 70.27 0.58 12.98 16 8 O -0.56 -17.32 17.12 19.83 0.34 -16.98 16 9 O -0.50 -7.03 12.66 -56.56 -0.72 -7.75 16 10 C -0.03 -0.75 9.01 22.79 0.21 -0.54 16 11 C -0.07 -2.08 5.45 -19.98 -0.11 -2.19 16 12 C -0.17 -6.09 5.29 -19.99 -0.11 -6.19 16 13 C 0.00 -0.10 8.61 22.18 0.19 0.09 16 14 C -0.25 -10.22 7.21 22.44 0.16 -10.06 16 15 C 0.13 6.11 5.30 -19.86 -0.11 6.01 16 16 C -0.51 -26.99 8.90 23.30 0.21 -26.78 16 17 H 0.04 2.60 7.61 -2.91 -0.02 2.58 16 18 C 0.01 0.71 5.42 85.37 0.46 1.18 16 19 N -0.81 -41.96 13.64 21.88 0.30 -41.67 16 20 Si 1.10 43.00 24.90 68.60 1.71 44.70 16 21 H -0.24 -8.03 6.44 99.48 0.64 -7.39 16 22 H -0.25 -9.59 7.02 99.48 0.70 -8.89 16 23 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 24 C -0.20 -8.97 5.93 -19.64 -0.12 -9.09 16 25 C 0.30 14.80 14.34 88.34 1.27 16.06 16 26 N -0.53 -26.77 18.53 18.99 0.35 -26.41 16 27 C 0.00 0.14 9.18 22.75 0.21 0.35 16 28 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.08 0.58 7.65 -2.39 -0.02 0.57 16 30 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 31 H 0.17 1.45 6.27 -2.91 -0.02 1.44 16 32 H 0.17 1.73 7.59 -2.91 -0.02 1.71 16 33 H 0.43 2.31 9.11 -74.06 -0.67 1.64 16 34 H 0.12 3.90 7.60 -2.91 -0.02 3.88 16 35 H 0.13 3.93 7.60 -2.91 -0.02 3.91 16 36 H 0.12 4.82 4.39 -2.91 -0.01 4.81 16 37 H 0.28 14.78 8.72 -92.71 -0.81 13.97 16 38 H 0.12 4.26 8.02 -2.91 -0.02 4.24 16 Total: -1.00 -68.45 340.31 5.98 -62.47 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.36 Total: 14.17 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.41 Total: -20.52 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: 0.65 Total: -68.08 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.16 Total: -32.75 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.71 Total: 44.70 kcal Total: -68.45 5.98 -62.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242390955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.788 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds