Wall clock time and date at job start Tue Mar 31 2020 13:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 108.66082 * 2 1 4 4 C 1.44336 * 108.78688 * 118.28571 * 2 1 3 5 5 N 1.49007 * 111.39664 * 180.27152 * 4 2 1 6 6 S 1.65598 * 121.56291 * 96.00930 * 5 4 2 7 7 O 1.42095 * 104.28128 * 333.92411 * 6 5 4 8 8 O 1.42104 * 104.27651 * 206.06822 * 6 5 4 9 9 C 1.81399 * 104.45041 * 90.00012 * 6 5 4 10 10 C 1.52997 * 109.47147 * 179.97438 * 9 6 5 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.42777 * 116.86781 * 276.28100 * 5 4 2 21 21 C 1.56197 * 113.95624 * 104.02193 * 20 5 4 22 22 S 1.83138 * 107.95186 * 321.00533 * 21 20 5 23 23 O 1.42103 * 109.46956 * 203.86019 * 22 21 20 24 24 C 1.53483 * 108.78584 * 241.71298 * 2 1 3 25 25 H 1.08999 * 109.46960 * 301.71736 * 1 2 3 26 26 H 1.09002 * 109.46836 * 61.70939 * 1 2 3 27 27 H 1.08998 * 109.47303 * 181.71286 * 1 2 3 28 28 H 1.09001 * 109.09238 * 59.77478 * 4 2 1 29 29 H 1.08999 * 109.09029 * 300.77041 * 4 2 1 30 30 H 1.09001 * 109.47190 * 59.99892 * 9 6 5 31 31 H 1.09004 * 109.47089 * 299.99759 * 9 6 5 32 32 H 1.09001 * 109.46832 * 60.00079 * 10 9 6 33 33 H 1.09001 * 109.47502 * 299.99601 * 10 9 6 34 34 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 35 35 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 37 37 H 1.08993 * 108.64571 * 224.88957 * 20 5 4 38 38 H 1.09002 * 108.64755 * 342.72749 * 20 5 4 39 39 H 1.08998 * 109.80458 * 201.39111 * 21 20 5 40 40 H 1.08994 * 109.82370 * 80.63257 * 21 20 5 41 41 H 1.09005 * 109.92989 * 276.27125 * 24 2 1 42 42 H 1.08993 * 109.93607 * 37.48933 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8787 1.0327 0.0000 4 6 1.9948 -0.6475 1.2033 5 7 3.4833 -0.6739 1.2662 6 16 4.3362 0.4753 2.0994 7 8 3.4851 1.6131 2.0979 8 8 5.6027 0.5070 1.4558 9 6 4.4906 -0.2020 3.7751 10 6 5.2701 0.7798 4.6522 11 6 5.3998 0.2088 6.0658 12 6 6.1681 1.1755 6.9295 13 1 6.5276 2.1045 6.5121 14 6 6.4113 0.8746 8.2529 15 7 5.9731 -0.2564 8.7613 16 14 7.3630 2.0732 9.3237 17 1 7.4891 1.5190 10.6957 18 1 6.6411 3.3699 9.3775 19 1 8.7161 2.2836 8.7492 20 6 4.1399 -1.7330 0.5693 21 6 4.8003 -1.2934 -0.7762 22 16 3.6805 -0.0936 -1.5890 23 8 3.9279 -0.0878 -2.9883 24 6 2.0243 -0.6886 -1.2796 25 1 -0.3633 0.5403 0.8742 26 1 -0.3633 0.4871 -0.9049 27 1 -0.3634 -1.0272 0.0307 28 1 1.6187 -1.6703 1.2258 29 1 1.6107 -0.1085 2.0693 30 1 5.0214 -1.1532 3.7350 31 1 3.4977 -0.3574 4.1971 32 1 4.7397 1.7312 4.6923 33 1 6.2631 0.9348 4.2301 34 1 5.9300 -0.7428 6.0260 35 1 4.4068 0.0541 6.4876 36 1 5.4786 -0.8787 8.2053 37 1 4.9164 -2.1453 1.2136 38 1 3.4119 -2.5169 0.3606 39 1 4.9398 -2.1616 -1.4202 40 1 5.7635 -0.8228 -0.5788 41 1 2.0379 -1.7694 -1.1383 42 1 1.3742 -0.4303 -2.1154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339437935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:26 Heat of formation + Delta-G solvation = -146.972952 kcal Electronic energy + Delta-G solvation = -24263.369174 eV Core-core repulsion = 20688.839331 eV Total energy + Delta-G solvation = -3574.529842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.56436 -38.21387 -36.97393 -36.81935 -36.70942 -35.55156 -34.18416 -31.33050 -29.25021 -28.46915 -26.97812 -25.40791 -24.21131 -22.59756 -21.68944 -19.82425 -19.00777 -18.66002 -18.40623 -17.73780 -17.27934 -16.73338 -16.50425 -16.04717 -15.65131 -15.59904 -15.38448 -15.23447 -14.97347 -14.59278 -14.22430 -13.87329 -13.81798 -13.57595 -13.53615 -13.12898 -13.07461 -13.03918 -12.97599 -12.88216 -12.57073 -12.52208 -12.46465 -12.03902 -11.92994 -11.81530 -11.77826 -11.54191 -11.37745 -11.05721 -10.67913 -10.52874 -10.17695 -9.15107 -8.67566 -6.38623 -0.77438 0.40305 1.55724 1.63140 1.64912 1.70971 1.82529 2.57973 2.67889 2.82958 3.14793 3.16955 3.49240 3.64224 3.78511 3.81214 3.89913 4.04433 4.15308 4.31890 4.41749 4.46917 4.55993 4.58360 4.72491 4.77975 4.81982 4.88450 4.92733 4.94556 4.97149 5.16329 5.20407 5.32709 5.36195 5.42630 5.45020 5.62102 5.99702 6.20222 6.59695 7.42198 8.74185 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.003012 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.795078 B = 9295.055119 C = 9676.919481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.086 0.914 4 C 0.113 3.887 5 N -0.997 5.997 6 S 2.617 3.383 7 O -0.966 6.966 8 O -0.973 6.973 9 C -0.615 4.615 10 C -0.102 4.102 11 C 0.014 3.986 12 C -0.629 4.629 13 H 0.052 0.948 14 C -0.036 4.036 15 N -0.937 5.937 16 Si 1.113 2.887 17 H -0.283 1.283 18 H -0.268 1.268 19 H -0.270 1.270 20 C 0.137 3.863 21 C -0.453 4.453 22 S 1.206 4.794 23 O -0.929 6.929 24 C -0.430 4.430 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.068 0.932 33 H 0.064 0.936 34 H -0.001 1.001 35 H 0.002 0.998 36 H 0.258 0.742 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 -4.223 -17.079 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.105 0.895 4 C -0.010 4.010 5 N -0.834 5.834 6 S 2.712 3.288 7 O -0.957 6.957 8 O -0.963 6.963 9 C -0.745 4.745 10 C -0.141 4.141 11 C -0.024 4.024 12 C -0.667 4.667 13 H 0.070 0.930 14 C -0.234 4.234 15 N -0.575 5.575 16 Si 0.934 3.066 17 H -0.209 1.209 18 H -0.193 1.193 19 H -0.195 1.195 20 C 0.008 3.992 21 C -0.594 4.594 22 S 1.411 4.589 23 O -0.924 6.924 24 C -0.570 4.570 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.017 0.983 35 H 0.020 0.980 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.041 -2.389 -16.481 19.980 hybrid contribution -0.655 -2.840 -2.130 3.610 sum -11.695 -5.229 -18.611 22.594 Atomic orbital electron populations 1.21848 0.91626 1.03402 1.03104 1.19722 0.98615 1.01060 0.91942 0.89532 1.20674 0.76026 1.05207 0.99055 1.57602 1.16656 1.45281 1.63820 1.04857 0.73313 0.74082 0.76547 1.93560 1.67207 1.47760 1.87123 1.93556 1.43558 1.86225 1.72983 1.30585 1.11020 1.11517 1.21351 1.21190 0.99258 0.97423 0.96214 1.19139 0.95421 0.95545 0.92334 1.22595 1.38816 1.06763 0.98477 0.92978 1.27358 0.97537 0.99975 0.98544 1.70923 1.36656 1.10137 1.39761 0.82982 0.75710 0.73511 0.74348 1.20879 1.19310 1.19523 1.20773 0.98729 0.89220 0.90440 1.28775 1.11786 1.12867 1.05963 1.70254 0.88288 1.08608 0.91759 1.92985 1.84321 1.82752 1.32378 1.27325 1.15420 1.09490 1.04750 0.90910 0.92160 0.90881 0.86341 0.87564 0.83798 0.83300 0.91378 0.91708 0.98304 0.98008 0.93236 0.88954 0.86079 0.87736 0.85787 0.86210 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.96 71.98 0.65 -0.40 16 2 C -0.09 -0.98 2.32 -13.24 -0.03 -1.01 16 3 H 0.09 1.11 7.74 -2.39 -0.02 1.09 16 4 C 0.11 1.01 4.30 83.28 0.36 1.36 16 5 N -1.00 -13.80 2.33 -526.06 -1.23 -15.03 16 6 S 2.62 59.51 5.45 -56.49 -0.31 59.21 16 7 O -0.97 -25.71 17.09 -127.65 -2.18 -27.89 16 8 O -0.97 -27.22 16.01 -127.65 -2.04 -29.26 16 9 C -0.61 -15.46 6.18 71.98 0.44 -15.01 16 10 C -0.10 -3.82 5.16 30.60 0.16 -3.66 16 11 C 0.01 0.67 4.28 29.85 0.13 0.80 16 12 C -0.63 -35.06 9.11 25.60 0.23 -34.83 16 13 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 14 C -0.04 -2.06 5.46 84.65 0.46 -1.60 16 15 N -0.94 -56.51 13.65 21.45 0.29 -56.22 16 16 Si 1.11 49.19 29.90 68.60 2.05 51.24 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 C 0.14 1.59 4.94 88.17 0.44 2.03 16 21 C -0.45 -7.90 6.68 73.09 0.49 -7.41 16 22 S 1.21 25.15 12.41 -56.49 -0.70 24.45 16 23 O -0.93 -31.54 18.13 -148.98 -2.70 -34.24 16 24 C -0.43 -5.49 5.33 72.14 0.38 -5.10 16 25 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.48 8.04 -2.39 -0.02 0.46 16 27 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.12 0.29 7.73 -2.39 -0.02 0.28 16 29 H 0.11 0.83 7.73 -2.39 -0.02 0.81 16 30 H 0.14 3.10 8.14 -2.39 -0.02 3.09 16 31 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.00 -0.07 8.01 -2.39 -0.02 -0.09 16 35 H 0.00 0.08 8.01 -2.39 -0.02 0.06 16 36 H 0.26 15.49 7.22 -92.71 -0.67 14.82 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 0.57 6.83 -2.39 -0.02 0.56 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 2.55 7.21 -2.39 -0.02 2.53 16 41 H 0.12 1.02 7.16 -2.48 -0.02 1.00 16 42 H 0.11 1.52 7.88 -2.48 -0.02 1.50 16 Total: -1.00 -82.76 355.45 -2.02 -84.78 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.09 Total: 7.79 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 3.71 Total: -64.83 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -0.93 Total: -71.25 kcal Atomic # 8 Polarization: -84.47 SS G_CDS: -6.93 Total: -91.39 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Atomic # 16 Polarization: 84.67 SS G_CDS: -1.01 Total: 83.66 kcal Total: -82.76 -2.02 -84.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339437935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.191 kcal (2) G-P(sol) polarization free energy of solvation -82.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds