Wall clock time and date at job start Tue Mar 31 2020 14:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.58118 * 2 1 4 4 O 1.42102 * 108.57575 * 228.96830 * 2 1 3 5 5 C 1.81400 * 101.92218 * 114.48839 * 2 1 3 6 6 C 1.50707 * 112.84725 * 302.33530 * 5 2 1 7 7 O 1.21289 * 119.99684 * 97.66044 * 6 5 2 8 8 N 1.34769 * 120.00031 * 277.65298 * 6 5 2 9 9 C 1.39938 * 120.00204 * 184.93671 * 8 6 5 10 10 C 1.39297 * 119.94685 * 325.63445 * 9 8 6 11 11 C 1.38477 * 120.42769 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32663 * 0.23858 * 11 10 9 13 13 C 1.40743 * 119.87962 * 359.48922 * 12 11 10 14 14 C 1.41416 * 120.21307 * 180.27514 * 13 12 11 15 15 H 1.07994 * 120.00283 * 202.22055 * 14 13 12 16 16 C 1.39935 * 119.99272 * 22.21278 * 14 13 12 17 17 N 1.30830 * 120.00126 * 22.09490 * 16 14 13 18 18 Si 1.86801 * 119.99727 * 202.08793 * 16 14 13 19 19 H 1.48498 * 109.47072 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47304 * 120.00473 * 18 16 14 21 21 H 1.48510 * 109.47090 * 240.00528 * 18 16 14 22 22 C 1.38237 * 119.94732 * 145.65612 * 9 8 6 23 23 C 1.53779 * 113.69234 * 73.60308 * 5 2 1 24 24 C 1.53782 * 87.08224 * 139.99431 * 23 5 2 25 25 C 1.53775 * 113.61605 * 171.14134 * 5 2 1 26 26 H 1.09006 * 109.46894 * 310.84488 * 1 2 3 27 27 H 1.08993 * 109.47212 * 70.84258 * 1 2 3 28 28 H 1.08997 * 109.47214 * 190.85245 * 1 2 3 29 29 H 0.97001 * 120.00120 * 4.94604 * 8 6 5 30 30 H 1.08000 * 119.78553 * 0.02562 * 10 9 8 31 31 H 1.08005 * 119.83817 * 179.97438 * 11 10 9 32 32 H 1.07996 * 120.06704 * 179.72273 * 12 11 10 33 33 H 0.96999 * 119.99463 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.15911 * 359.95670 * 22 9 8 35 35 H 1.09008 * 113.61484 * 254.54249 * 23 5 2 36 36 H 1.08998 * 113.61786 * 25.44267 * 23 5 2 37 37 H 1.08994 * 113.61475 * 220.02067 * 24 23 5 38 38 H 1.09004 * 113.61267 * 89.11736 * 24 23 5 39 39 H 1.09003 * 113.61553 * 334.47860 * 25 5 2 40 40 H 1.09000 * 113.61702 * 105.29915 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8843 -1.0161 5 6 2.1888 -0.7357 1.6152 6 6 1.5828 0.0313 2.7623 7 8 0.5335 -0.3338 3.2488 8 7 2.2070 1.1227 3.2476 9 6 1.6998 1.7745 4.3773 10 6 0.3241 1.8314 4.5882 11 6 -0.1886 2.4742 5.7024 12 6 0.6566 3.0689 6.6122 13 6 2.0491 3.0144 6.4153 14 6 2.9239 3.6178 7.3484 15 1 3.9233 3.8969 7.0493 16 6 2.4942 3.8532 8.6591 17 7 1.4996 3.1633 9.1554 18 14 3.3411 5.1525 9.7004 19 1 4.4278 5.7874 8.9123 20 1 2.3532 6.1858 10.1025 21 1 3.9151 4.5175 10.9140 22 6 2.5649 2.3612 5.2820 23 6 1.9275 -2.2497 1.6802 24 6 3.2206 -2.3580 2.5054 25 6 3.6782 -1.0638 1.8121 26 1 -0.3633 0.6721 0.7775 27 1 -0.3633 0.3372 -0.9707 28 1 -0.3633 -1.0093 0.1935 29 1 3.0078 1.4566 2.8137 30 1 -0.3470 1.3712 3.8781 31 1 -1.2569 2.5130 5.8564 32 1 0.2520 3.5730 7.4774 33 1 1.2021 3.3263 10.0642 34 1 3.6317 2.3172 5.1195 35 1 1.0296 -2.5143 2.2388 36 1 1.9853 -2.7448 0.7109 37 1 3.8282 -3.2269 2.2529 38 1 3.0644 -2.2468 3.5784 39 1 4.2147 -1.2347 0.8788 40 1 4.1941 -0.3701 2.4760 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361664320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:05 Heat of formation + Delta-G solvation = -77.215474 kcal Electronic energy + Delta-G solvation = -25416.781230 eV Core-core repulsion = 21709.832347 eV Total energy + Delta-G solvation = -3706.948882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95401 -39.66948 -38.55560 -38.00746 -37.26201 -36.24990 -34.92923 -31.80193 -30.67135 -30.36471 -27.93860 -27.17203 -26.81157 -23.93643 -22.87435 -22.11892 -20.83856 -19.98530 -19.47284 -18.92494 -17.70842 -17.47267 -17.21515 -17.06801 -16.80641 -16.50817 -16.21029 -15.73247 -15.19617 -14.82066 -14.63466 -14.22606 -14.11744 -14.09792 -13.76803 -13.67622 -13.57639 -13.52130 -13.32529 -13.21960 -13.03537 -12.93295 -12.71662 -12.38383 -12.17084 -12.00633 -11.90522 -11.67875 -11.52172 -11.25754 -11.10706 -10.96910 -10.67269 -9.46283 -8.84370 -8.68055 -6.35856 -1.21721 0.76723 0.95709 1.35700 1.39853 1.51721 1.54839 1.60519 1.94472 2.20861 2.38100 2.67372 2.70329 3.05585 3.22614 3.46244 3.64174 3.71062 3.98333 4.05889 4.17576 4.40864 4.52572 4.61414 4.67139 4.79309 4.85276 4.89993 4.95665 4.99516 5.00385 5.07943 5.16020 5.25748 5.30704 5.68005 5.79947 6.04416 6.09800 6.22567 6.48873 6.65676 6.89752 6.92418 7.07053 8.28965 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.003203 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.321444 B = 8740.092597 C = 8897.321698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.446 3.554 3 O -0.962 6.962 4 O -0.939 6.939 5 C -0.607 4.607 6 C 0.547 3.453 7 O -0.530 6.530 8 N -0.651 5.651 9 C 0.161 3.839 10 C -0.244 4.244 11 C -0.095 4.095 12 C -0.199 4.199 13 C 0.096 3.904 14 C -0.497 4.497 15 H 0.080 0.920 16 C 0.040 3.960 17 N -0.817 5.817 18 Si 0.981 3.019 19 H -0.256 1.256 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.258 4.258 23 C -0.092 4.092 24 C -0.127 4.127 25 C -0.106 4.106 26 H 0.124 0.876 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.418 0.582 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.290 0.710 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -8.914 -14.573 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.628 3.372 3 O -0.959 6.959 4 O -0.936 6.936 5 C -0.697 4.697 6 C 0.332 3.668 7 O -0.407 6.407 8 N -0.296 5.296 9 C 0.068 3.932 10 C -0.265 4.265 11 C -0.114 4.114 12 C -0.219 4.219 13 C 0.093 3.907 14 C -0.526 4.526 15 H 0.098 0.902 16 C -0.177 4.177 17 N -0.442 5.442 18 Si 0.802 3.198 19 H -0.180 1.180 20 H -0.189 1.189 21 H -0.190 1.190 22 C -0.280 4.280 23 C -0.130 4.130 24 C -0.165 4.165 25 C -0.144 4.144 26 H 0.143 0.857 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.255 0.745 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.311 -8.961 -14.693 17.260 hybrid contribution -0.057 0.643 1.305 1.456 sum 1.254 -8.318 -13.387 15.811 Atomic orbital electron populations 1.30137 1.22615 1.13918 1.13042 1.07208 0.79908 0.74458 0.75587 1.93578 1.80816 1.35345 1.86177 1.93580 1.80716 1.67314 1.51968 1.31606 1.10192 1.10396 1.17544 1.19229 0.84387 0.79754 0.83419 1.90707 1.22864 1.67885 1.59223 1.43344 1.30412 1.27668 1.28147 1.17470 0.92621 0.95818 0.87297 1.20637 0.93339 1.10553 1.01983 1.20825 0.98591 0.97589 0.94411 1.21294 0.93687 1.06158 1.00727 1.17722 0.92808 0.88758 0.91380 1.19836 1.00664 1.36745 0.95321 0.90185 1.26782 0.95064 0.96544 0.99293 1.69912 1.24410 1.33348 1.16571 0.85180 0.79125 0.77958 0.77579 1.17969 1.18916 1.19037 1.20830 0.97550 1.10589 0.99026 1.22861 1.01229 0.84624 1.04270 1.22762 0.96656 0.98153 0.98917 1.22936 0.87484 0.99608 1.04378 0.85748 0.82654 0.82528 0.74472 0.86502 0.87091 0.87946 0.89943 0.87407 0.88841 0.84493 0.87289 0.91459 0.85279 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -10.19 10.27 113.37 1.16 -9.02 16 2 S 2.45 49.63 4.89 -56.49 -0.28 49.35 16 3 O -0.96 -26.52 18.09 -127.37 -2.30 -28.82 16 4 O -0.94 -20.63 17.48 -127.37 -2.23 -22.85 16 5 C -0.61 -12.92 1.02 -11.01 -0.01 -12.93 16 6 C 0.55 16.93 5.81 87.66 0.51 17.44 16 7 O -0.53 -19.54 13.62 -3.06 -0.04 -19.58 16 8 N -0.65 -22.59 5.06 -303.65 -1.54 -24.13 16 9 C 0.16 7.16 6.30 38.10 0.24 7.40 16 10 C -0.24 -11.35 8.71 22.58 0.20 -11.16 16 11 C -0.10 -4.62 10.01 22.19 0.22 -4.40 16 12 C -0.20 -10.62 8.72 22.75 0.20 -10.42 16 13 C 0.10 5.20 5.59 -21.30 -0.12 5.08 16 14 C -0.50 -26.43 9.04 23.46 0.21 -26.22 16 15 H 0.08 4.08 7.94 -2.91 -0.02 4.05 16 16 C 0.04 1.96 5.06 85.25 0.43 2.40 16 17 N -0.82 -42.45 11.07 21.82 0.24 -42.21 16 18 Si 0.98 37.44 29.61 68.60 2.03 39.48 16 19 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 22 C -0.26 -12.53 9.70 22.85 0.22 -12.31 16 23 C -0.09 -1.52 7.15 31.12 0.22 -1.30 16 24 C -0.13 -2.15 7.80 31.12 0.24 -1.91 16 25 C -0.11 -1.85 7.12 31.12 0.22 -1.63 16 26 H 0.12 2.35 8.02 -2.39 -0.02 2.33 16 27 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.42 12.31 8.15 -92.71 -0.76 11.55 16 30 H 0.12 5.15 6.14 -2.91 -0.02 5.13 16 31 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 32 H 0.10 5.66 6.15 -2.91 -0.02 5.64 16 33 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 34 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.09 1.72 7.49 -2.38 -0.02 1.71 16 36 H 0.14 1.48 7.60 -2.39 -0.02 1.47 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.46 16 39 H 0.13 1.63 8.10 -2.39 -0.02 1.61 16 40 H 0.09 1.63 7.33 -2.39 -0.02 1.61 16 Total: -1.00 -71.23 347.36 0.16 -71.07 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.32 Total: 36.68 kcal Atomic # 6 Polarization: -62.93 SS G_CDS: 3.95 Total: -58.97 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -1.30 Total: -66.34 kcal Atomic # 8 Polarization: -66.69 SS G_CDS: -4.57 Total: -71.26 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.28 Total: 49.35 kcal Total: -71.23 0.16 -71.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361664320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.149 kcal (2) G-P(sol) polarization free energy of solvation -71.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds