Wall clock time and date at job start Tue Mar 31 2020 13:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47565 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47166 * 300.00373 * 3 2 1 6 6 H 1.48504 * 109.47043 * 59.99585 * 3 2 1 7 7 C 1.38814 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00456 * 173.35637 * 7 2 1 9 9 N 1.36941 * 119.99725 * 353.63663 * 7 2 1 10 10 C 1.46497 * 120.00127 * 341.49385 * 9 7 2 11 11 C 1.52994 * 109.47202 * 96.75688 * 10 9 7 12 12 C 1.50697 * 109.47281 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99799 * 0.02562 * 12 11 10 14 14 O 1.34230 * 119.99997 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99862 * 161.49755 * 9 7 2 16 16 C 1.50698 * 109.46870 * 83.47102 * 15 9 7 17 17 N 1.31074 * 126.66259 * 279.32907 * 16 15 9 18 18 N 1.28834 * 107.99027 * 179.90061 * 17 16 15 19 19 N 1.28738 * 109.39699 * 0.38281 * 18 17 16 20 20 N 1.29010 * 108.81196 * 359.76626 * 19 18 17 21 21 C 1.46499 * 126.44313 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46797 * 275.37742 * 21 20 19 23 23 F 1.39895 * 109.47495 * 59.99563 * 22 21 20 24 24 F 1.39907 * 109.46986 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47153 * 299.99271 * 22 21 20 26 26 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47236 * 216.76278 * 10 9 7 28 28 H 1.09005 * 109.46656 * 336.75593 * 10 9 7 29 29 H 1.08998 * 109.47506 * 300.00424 * 11 10 9 30 30 H 1.09006 * 109.46651 * 60.00347 * 11 10 9 31 31 H 0.96703 * 116.99832 * 180.02562 * 14 12 11 32 32 H 1.08999 * 109.46802 * 203.46957 * 15 9 7 33 33 H 1.08997 * 109.46821 * 323.46820 * 15 9 7 34 34 H 1.09003 * 109.47103 * 35.36963 * 21 20 19 35 35 H 1.08995 * 109.47750 * 155.37507 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0848 -1.2054 -0.1077 9 7 1.3318 -2.3844 0.1325 10 6 -0.0311 -2.3908 0.6697 11 6 -1.0344 -2.4096 -0.4852 12 6 -2.4364 -2.4169 0.0674 13 8 -2.6148 -2.4075 1.2624 14 8 -3.4869 -2.4339 -0.7680 15 6 1.9691 -3.6427 -0.2635 16 6 2.8358 -4.1431 0.8632 17 7 4.0474 -3.7388 1.1576 18 7 4.4498 -4.4031 2.1855 19 7 3.5295 -5.2264 2.5496 20 7 2.5184 -5.0964 1.7589 21 6 1.2608 -5.8450 1.8240 22 6 1.4202 -7.1750 1.0847 23 9 2.4395 -7.9225 1.6840 24 9 0.2194 -7.8902 1.1473 25 9 1.7474 -6.9286 -0.2530 26 1 -0.4851 0.8400 0.0004 27 1 -0.1733 -3.2763 1.2891 28 1 -0.1880 -1.4965 1.2729 29 1 -0.8922 -1.5241 -1.1046 30 1 -0.8773 -3.3040 -1.0883 31 1 -4.3668 -2.4375 -0.3667 32 1 1.2018 -4.3835 -0.4882 33 1 2.5835 -3.4761 -1.1482 34 1 1.0058 -6.0371 2.8663 35 1 0.4666 -5.2626 1.3571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:42 Heat of formation + Delta-G solvation = -94.559775 kcal Electronic energy + Delta-G solvation = -28767.175057 eV Core-core repulsion = 24003.616865 eV Total energy + Delta-G solvation = -4763.558191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.48485 -48.01290 -47.93673 -43.81847 -39.59501 -36.75007 -35.82957 -35.49394 -32.92535 -31.32701 -30.70224 -29.88561 -26.76108 -24.98653 -24.58176 -23.14380 -22.37456 -21.20766 -19.96834 -19.09033 -18.89262 -18.52689 -17.64593 -17.26960 -16.74229 -16.16049 -15.79948 -15.43883 -15.02225 -14.97195 -14.82031 -14.62690 -14.36961 -14.21997 -14.07243 -14.03058 -13.69401 -13.48508 -12.89124 -12.69023 -12.51309 -12.38834 -12.02614 -11.61046 -11.40322 -11.06480 -11.03134 -10.84660 -10.81586 -10.70084 -10.26459 -10.20273 -10.03724 -9.87412 -9.65193 -8.80596 -7.34881 -6.03382 -3.55743 1.32418 1.75131 2.35286 2.65766 2.89194 3.25188 3.27760 3.37018 3.40924 3.45957 3.70584 3.79311 4.22273 4.28429 4.45203 4.58025 4.79760 5.13452 5.18763 5.64566 5.77175 5.83135 5.98916 6.03239 6.10664 6.28773 6.32474 6.44003 6.95762 7.27423 7.41353 7.65993 8.02957 8.50224 8.89146 8.95714 9.43264 9.83375 10.97737 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005655 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.660268 B = 4950.262130 C = 6899.062156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.005 3.995 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.087 0.913 9 N -0.574 5.574 10 C 0.180 3.820 11 C -0.117 4.117 12 C 0.486 3.514 13 O -0.532 6.532 14 O -0.529 6.529 15 C 0.211 3.789 16 C 0.208 3.792 17 N -0.293 5.293 18 N -0.071 5.071 19 N -0.107 5.107 20 N -0.328 5.328 21 C 0.077 3.923 22 C 0.446 3.554 23 F -0.169 7.169 24 F -0.168 7.168 25 F -0.172 7.172 26 H 0.257 0.743 27 H 0.005 0.995 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.065 0.935 31 H 0.395 0.605 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.152 0.848 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -11.997 -1.145 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.192 4.192 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.105 0.895 9 N -0.292 5.292 10 C 0.055 3.945 11 C -0.156 4.156 12 C 0.330 3.670 13 O -0.421 6.421 14 O -0.340 6.340 15 C 0.077 3.923 16 C -0.073 4.073 17 N -0.141 5.141 18 N -0.066 5.066 19 N -0.092 5.092 20 N -0.131 5.131 21 C -0.049 4.049 22 C 0.390 3.610 23 F -0.151 7.151 24 F -0.149 7.149 25 F -0.153 7.153 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.083 0.917 31 H 0.252 0.748 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.170 0.830 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.110 -11.803 -0.257 12.208 hybrid contribution -1.223 0.524 -0.096 1.335 sum -4.333 -11.279 -0.353 12.087 Atomic orbital electron populations 1.69881 1.05111 1.25633 1.55193 1.24945 0.95678 0.98509 1.00038 0.85955 0.79344 0.82663 0.77297 1.19928 1.21445 1.21547 1.19543 0.91766 0.82618 1.44383 0.89519 1.44214 1.12240 1.01020 1.71725 1.20776 0.80929 1.00540 0.92261 1.22414 0.85112 1.05204 1.02886 1.24226 0.87928 0.70062 0.84743 1.90625 1.86783 1.46944 1.17710 1.84638 1.18282 1.86250 1.44783 1.19573 0.93471 0.89587 0.89645 1.28933 0.94464 0.87632 0.96268 1.75105 1.08510 1.20803 1.09651 1.78567 1.18730 1.02271 1.06998 1.78846 0.93189 1.20827 1.16368 1.48141 1.13642 1.28635 1.22646 1.23169 0.85276 0.89565 1.06895 1.20525 0.74663 0.87346 0.78483 1.93274 1.60083 1.78610 1.83083 1.93249 1.45549 1.79939 1.96203 1.93259 1.92506 1.94169 1.35363 0.93220 0.97665 0.86685 0.83698 0.91656 0.74841 0.91116 0.88331 0.83006 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -22.30 7.91 55.49 0.44 -21.87 16 2 C 0.00 0.12 5.22 -17.43 -0.09 0.03 16 3 Si 0.92 20.37 29.56 -169.99 -5.02 15.35 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.05 9.72 -15.06 -0.15 -6.20 16 8 H 0.09 2.13 7.84 -52.49 -0.41 1.72 16 9 N -0.57 -11.76 2.53 -174.61 -0.44 -12.20 16 10 C 0.18 3.61 4.12 -4.05 -0.02 3.60 16 11 C -0.12 -2.12 5.56 -27.89 -0.15 -2.28 16 12 C 0.49 8.56 8.33 36.00 0.30 8.86 16 13 O -0.53 -10.65 16.74 -18.75 -0.31 -10.96 16 14 O -0.53 -7.59 13.42 -39.26 -0.53 -8.11 16 15 C 0.21 3.51 5.98 -5.19 -0.03 3.48 16 16 C 0.21 3.68 7.66 -155.43 -1.19 2.49 16 17 N -0.29 -5.99 12.36 32.70 0.40 -5.58 16 18 N -0.07 -1.43 13.43 60.35 0.81 -0.62 16 19 N -0.11 -1.89 13.29 60.35 0.80 -1.08 16 20 N -0.33 -5.06 3.19 -58.27 -0.19 -5.25 16 21 C 0.08 0.81 6.09 -4.04 -0.02 0.79 16 22 C 0.45 4.72 3.29 37.16 0.12 4.84 16 23 F -0.17 -2.07 17.23 2.25 0.04 -2.03 16 24 F -0.17 -1.61 17.32 2.25 0.04 -1.57 16 25 F -0.17 -2.01 17.00 2.25 0.04 -1.97 16 26 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 27 H 0.01 0.09 6.90 -51.93 -0.36 -0.26 16 28 H 0.12 2.81 5.88 -51.93 -0.31 2.50 16 29 H 0.15 3.07 6.16 -51.93 -0.32 2.75 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.39 3.83 9.10 45.56 0.41 4.24 16 32 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 33 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 34 H 0.15 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.15 1.42 6.10 -51.93 -0.32 1.10 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -29.88 322.85 -2.35 -32.23 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -2.06 Total: 3.21 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: -1.23 Total: 15.60 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 1.83 Total: -46.61 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.84 Total: -19.07 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.12 Total: -5.58 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.88 -2.35 -32.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.332 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds