Wall clock time and date at job start Tue Mar 31 2020 13:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47565 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47166 * 300.00373 * 3 2 1 6 6 H 1.48504 * 109.47043 * 59.99585 * 3 2 1 7 7 C 1.38814 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00456 * 173.35637 * 7 2 1 9 9 N 1.36941 * 119.99725 * 353.63663 * 7 2 1 10 10 C 1.46497 * 120.00127 * 341.49385 * 9 7 2 11 11 C 1.52994 * 109.47202 * 96.75688 * 10 9 7 12 12 C 1.50697 * 109.47281 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99799 * 0.02562 * 12 11 10 14 14 O 1.34230 * 119.99997 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99862 * 161.49755 * 9 7 2 16 16 C 1.50698 * 109.46870 * 83.47102 * 15 9 7 17 17 N 1.31074 * 126.66259 * 279.32907 * 16 15 9 18 18 N 1.28834 * 107.99027 * 179.90061 * 17 16 15 19 19 N 1.28738 * 109.39699 * 0.38281 * 18 17 16 20 20 N 1.29010 * 108.81196 * 359.76626 * 19 18 17 21 21 C 1.46499 * 126.44313 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46797 * 275.37742 * 21 20 19 23 23 F 1.39895 * 109.47495 * 59.99563 * 22 21 20 24 24 F 1.39907 * 109.46986 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47153 * 299.99271 * 22 21 20 26 26 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47236 * 216.76278 * 10 9 7 28 28 H 1.09005 * 109.46656 * 336.75593 * 10 9 7 29 29 H 1.08998 * 109.47506 * 300.00424 * 11 10 9 30 30 H 1.09006 * 109.46651 * 60.00347 * 11 10 9 31 31 H 0.96703 * 116.99832 * 180.02562 * 14 12 11 32 32 H 1.08999 * 109.46802 * 203.46957 * 15 9 7 33 33 H 1.08997 * 109.46821 * 323.46820 * 15 9 7 34 34 H 1.09003 * 109.47103 * 35.36963 * 21 20 19 35 35 H 1.08995 * 109.47750 * 155.37507 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0848 -1.2054 -0.1077 9 7 1.3318 -2.3844 0.1325 10 6 -0.0311 -2.3908 0.6697 11 6 -1.0344 -2.4096 -0.4852 12 6 -2.4364 -2.4169 0.0674 13 8 -2.6148 -2.4075 1.2624 14 8 -3.4869 -2.4339 -0.7680 15 6 1.9691 -3.6427 -0.2635 16 6 2.8358 -4.1431 0.8632 17 7 4.0474 -3.7388 1.1576 18 7 4.4498 -4.4031 2.1855 19 7 3.5295 -5.2264 2.5496 20 7 2.5184 -5.0964 1.7589 21 6 1.2608 -5.8450 1.8240 22 6 1.4202 -7.1750 1.0847 23 9 2.4395 -7.9225 1.6840 24 9 0.2194 -7.8902 1.1473 25 9 1.7474 -6.9286 -0.2530 26 1 -0.4851 0.8400 0.0004 27 1 -0.1733 -3.2763 1.2891 28 1 -0.1880 -1.4965 1.2729 29 1 -0.8922 -1.5241 -1.1046 30 1 -0.8773 -3.3040 -1.0883 31 1 -4.3668 -2.4375 -0.3667 32 1 1.2018 -4.3835 -0.4882 33 1 2.5835 -3.4761 -1.1482 34 1 1.0058 -6.0371 2.8663 35 1 0.4666 -5.2626 1.3571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:41 Heat of formation + Delta-G solvation = -114.487301 kcal Electronic energy + Delta-G solvation = -28768.039179 eV Core-core repulsion = 24003.616865 eV Total energy + Delta-G solvation = -4764.422314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.33897 -48.83972 -48.82689 -45.19214 -40.94428 -38.25906 -37.06881 -36.80700 -34.43666 -32.97051 -32.00757 -31.14047 -28.26721 -26.49755 -25.72723 -24.53152 -23.68740 -22.56656 -21.41404 -20.04693 -19.76037 -19.53250 -19.07304 -18.64105 -18.10676 -17.37960 -17.20044 -16.92891 -16.51334 -16.10937 -15.87468 -15.62968 -15.50411 -15.22586 -15.21747 -14.93211 -14.92688 -14.83309 -14.09101 -13.94567 -13.85998 -13.61480 -13.45707 -13.16421 -12.97258 -12.70364 -12.52668 -12.29802 -12.18912 -12.03993 -12.00053 -11.96046 -11.60452 -11.31266 -11.10044 -10.53966 -9.02027 -7.84874 -5.35478 0.03859 0.64234 1.19988 1.44054 1.47911 1.53274 1.54921 1.61970 2.39218 2.43710 2.56281 2.63099 2.89868 3.11735 3.21747 3.40395 3.59529 3.68027 3.81031 4.31255 4.43185 4.44981 4.64128 4.68127 4.79379 4.86415 4.99990 5.07721 5.60779 5.71149 5.82854 5.95446 6.32018 7.12800 7.27702 7.53976 7.72235 8.08017 9.12180 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005655 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.660268 B = 4950.262130 C = 6899.062156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.033 4.033 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.301 1.301 7 C -0.253 4.253 8 H 0.073 0.927 9 N -0.584 5.584 10 C 0.186 3.814 11 C -0.110 4.110 12 C 0.494 3.506 13 O -0.560 6.560 14 O -0.520 6.520 15 C 0.213 3.787 16 C 0.206 3.794 17 N -0.327 5.327 18 N -0.100 5.100 19 N -0.100 5.100 20 N -0.316 5.316 21 C 0.066 3.934 22 C 0.454 3.546 23 F -0.180 7.180 24 F -0.158 7.158 25 F -0.178 7.178 26 H 0.248 0.752 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.418 0.582 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.182 0.818 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -13.653 -1.565 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.228 4.228 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.228 1.228 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.303 5.303 10 C 0.061 3.939 11 C -0.150 4.150 12 C 0.339 3.661 13 O -0.452 6.452 14 O -0.332 6.332 15 C 0.081 3.919 16 C -0.075 4.075 17 N -0.175 5.175 18 N -0.094 5.094 19 N -0.086 5.086 20 N -0.119 5.119 21 C -0.057 4.057 22 C 0.398 3.602 23 F -0.162 7.162 24 F -0.139 7.139 25 F -0.159 7.159 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.278 0.722 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.200 0.800 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.526 -13.494 -0.694 14.250 hybrid contribution -0.867 0.926 0.051 1.269 sum -5.392 -12.569 -0.643 13.692 Atomic orbital electron populations 1.70046 1.05266 1.25016 1.56011 1.25345 0.96274 1.00015 1.01139 0.85342 0.78331 0.81002 0.76501 1.20405 1.21428 1.22836 1.19505 0.91321 0.84095 1.43340 0.90944 1.44202 1.12490 1.01346 1.72242 1.20541 0.81207 0.99466 0.92729 1.22133 0.85377 1.05490 1.01987 1.23981 0.88421 0.69395 0.84289 1.90623 1.87282 1.48385 1.18861 1.84560 1.19170 1.85443 1.44075 1.19808 0.94148 0.88858 0.89047 1.28801 0.93952 0.88114 0.96656 1.75022 1.10239 1.21882 1.10340 1.78546 1.19902 1.03324 1.07674 1.78745 0.93454 1.20089 1.16358 1.48309 1.14334 1.28055 1.21218 1.23710 0.83403 0.89317 1.09295 1.20401 0.74616 0.87164 0.78037 1.93261 1.60727 1.78914 1.83256 1.93277 1.44834 1.79674 1.96125 1.93253 1.92599 1.94187 1.35859 0.94148 0.95238 0.91165 0.86424 0.88305 0.72179 0.87021 0.88151 0.80007 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.10 7.91 21.65 0.17 -44.93 16 2 C -0.03 -1.59 5.22 84.86 0.44 -1.15 16 3 Si 0.96 42.43 29.56 68.60 2.03 44.46 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.25 -12.00 9.72 84.03 0.82 -11.18 16 8 H 0.07 3.60 7.84 -2.91 -0.02 3.58 16 9 N -0.58 -23.12 2.53 -706.34 -1.79 -24.91 16 10 C 0.19 7.14 4.12 86.38 0.36 7.50 16 11 C -0.11 -3.77 5.56 29.84 0.17 -3.60 16 12 C 0.49 16.23 8.33 71.23 0.59 16.83 16 13 O -0.56 -21.40 16.74 21.96 0.37 -21.03 16 14 O -0.52 -13.34 13.42 -51.41 -0.69 -14.03 16 15 C 0.21 6.61 5.98 85.63 0.51 7.12 16 16 C 0.21 6.94 7.66 138.13 1.06 8.00 16 17 N -0.33 -13.22 12.36 -50.45 -0.62 -13.84 16 18 N -0.10 -3.98 13.43 37.01 0.50 -3.49 16 19 N -0.10 -3.40 13.29 37.02 0.49 -2.91 16 20 N -0.32 -9.02 3.19 -338.27 -1.08 -10.10 16 21 C 0.07 1.16 6.09 86.38 0.53 1.68 16 22 C 0.45 8.16 3.29 71.98 0.24 8.39 16 23 F -0.18 -3.99 17.23 44.97 0.78 -3.22 16 24 F -0.16 -2.47 17.32 44.97 0.78 -1.69 16 25 F -0.18 -3.61 17.00 44.97 0.76 -2.84 16 26 H 0.25 12.34 8.31 -92.71 -0.77 11.57 16 27 H 0.03 0.98 6.90 -2.39 -0.02 0.96 16 28 H 0.07 3.41 5.88 -2.38 -0.01 3.39 16 29 H 0.12 4.84 6.16 -2.39 -0.01 4.82 16 30 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.42 6.75 9.10 -74.06 -0.67 6.07 16 32 H 0.11 2.51 6.91 -2.39 -0.02 2.49 16 33 H 0.10 3.11 8.09 -2.39 -0.02 3.09 16 34 H 0.18 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.18 2.40 6.10 -2.39 -0.01 2.39 16 Total: -1.00 -65.42 322.85 6.92 -58.50 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.52 Total: 6.45 kcal Atomic # 6 Polarization: 28.87 SS G_CDS: 4.71 Total: 33.58 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -2.33 Total: -100.18 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.32 Total: -35.06 kcal Atomic # 9 Polarization: -10.07 SS G_CDS: 2.32 Total: -7.75 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -65.42 6.92 -58.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.990 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds