Wall clock time and date at job start Tue Mar 31 2020 13:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.70343 * 2 1 4 4 C 1.53187 * 109.58906 * 120.35759 * 2 1 3 5 5 C 1.53043 * 109.31652 * 174.42169 * 4 2 1 6 6 C 1.53042 * 109.53691 * 298.63832 * 5 4 2 7 7 H 1.09005 * 109.49629 * 301.41055 * 6 5 4 8 8 C 1.50695 * 109.49778 * 181.34813 * 6 5 4 9 9 O 1.20828 * 120.00194 * 359.97438 * 8 6 5 10 10 O 1.34231 * 120.00475 * 179.97438 * 8 6 5 11 11 C 1.52761 * 109.38591 * 61.23673 * 6 5 4 12 12 N 1.46923 * 109.00915 * 305.58917 * 11 6 5 13 13 C 1.34782 * 120.63272 * 233.58277 * 12 11 6 14 14 O 1.21757 * 120.00261 * 185.29951 * 13 12 11 15 15 C 1.46233 * 119.99665 * 5.30102 * 13 12 11 16 16 S 1.75675 * 125.22978 * 45.20777 * 15 13 12 17 17 C 1.75474 * 92.09260 * 179.97438 * 16 15 13 18 18 C 1.32762 * 111.35977 * 0.02562 * 17 16 15 19 19 C 1.39547 * 125.23084 * 225.18245 * 15 13 12 20 20 C 1.40538 * 123.71079 * 0.05798 * 19 15 13 21 21 H 1.07997 * 120.00392 * 21.00846 * 20 19 15 22 22 C 1.40305 * 120.00039 * 201.01192 * 20 19 15 23 23 N 1.30640 * 120.00025 * 12.35013 * 22 20 19 24 24 Si 1.86800 * 120.00084 * 192.35841 * 22 20 19 25 25 H 1.48500 * 109.47202 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47112 * 119.99945 * 24 22 20 27 27 H 1.48502 * 109.46954 * 239.99547 * 24 22 20 28 28 H 1.09000 * 109.47251 * 172.67400 * 1 2 3 29 29 H 1.09000 * 109.47362 * 292.67784 * 1 2 3 30 30 H 1.08997 * 109.47322 * 52.67436 * 1 2 3 31 31 H 1.08994 * 109.49886 * 294.37684 * 4 2 1 32 32 H 1.09007 * 109.49631 * 54.43924 * 4 2 1 33 33 H 1.08995 * 109.45596 * 58.65288 * 5 4 2 34 34 H 1.08998 * 109.46010 * 178.61536 * 5 4 2 35 35 H 0.96694 * 117.00599 * 179.97438 * 10 8 6 36 36 H 1.09000 * 109.51291 * 185.70595 * 11 6 5 37 37 H 1.09003 * 109.43051 * 65.42187 * 11 6 5 38 38 H 1.07995 * 124.31882 * 180.26617 * 17 16 15 39 39 H 1.08005 * 122.77821 * 180.02562 * 18 17 16 40 40 H 0.97002 * 120.00651 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 6 3.5675 -0.8480 1.1701 6 6 3.9569 -1.6657 -0.0636 7 1 3.4983 -2.6528 -0.0054 8 6 5.4559 -1.8100 -0.1188 9 8 6.1430 -1.3099 0.7401 10 8 6.0279 -2.4941 -1.1221 11 6 3.4644 -0.9518 -1.3212 12 7 2.0225 -0.6995 -1.1946 13 6 1.1673 -1.1068 -2.1533 14 8 -0.0111 -0.8082 -2.0849 15 6 1.6547 -1.9076 -3.2757 16 16 2.7425 -3.2807 -3.1440 17 6 2.7302 -3.5389 -4.8796 18 6 1.9608 -2.6492 -5.4953 19 6 1.3268 -1.6988 -4.6159 20 6 0.4734 -0.6741 -5.0596 21 1 0.3016 0.1925 -4.4384 22 6 -0.1554 -0.7769 -6.3096 23 7 -0.1473 -1.9136 -6.9534 24 14 -1.0041 0.7117 -7.0535 25 1 -0.8722 1.8686 -6.1319 26 1 -0.3729 1.0417 -8.3564 27 1 -2.4425 0.4079 -7.2632 28 1 -0.3634 -1.0193 -0.1310 29 1 -0.3634 0.3962 0.9482 30 1 -0.3634 0.6231 -0.8172 31 1 1.7660 -0.1670 2.1367 32 1 1.6025 -1.7252 1.2915 33 1 4.0060 0.1473 1.0992 34 1 3.9378 -1.3449 2.0668 35 1 6.9926 -2.5593 -1.1150 36 1 3.6503 -1.5796 -2.1926 37 1 3.9928 -0.0048 -1.4310 38 1 3.2756 -4.3238 -5.3823 39 1 1.8206 -2.6391 -6.5662 40 1 -0.5817 -1.9847 -7.8178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603387862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:08 Heat of formation + Delta-G solvation = -96.573544 kcal Electronic energy + Delta-G solvation = -25961.538463 eV Core-core repulsion = 22253.750152 eV Total energy + Delta-G solvation = -3707.788311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59016 -39.35089 -36.87365 -36.10945 -35.77131 -33.11052 -32.70670 -32.36373 -29.02018 -27.80396 -26.12943 -24.56819 -23.25165 -22.54635 -21.26650 -20.20788 -19.11752 -18.75345 -17.99820 -17.13417 -16.40433 -15.91907 -15.83499 -15.45818 -15.01557 -14.65290 -14.34504 -14.00473 -13.64522 -13.58635 -13.37116 -12.65235 -12.47992 -12.35771 -12.17477 -11.86108 -11.78135 -11.68330 -11.49410 -11.47818 -11.17970 -11.11083 -10.85871 -10.74777 -10.67697 -10.52378 -10.43175 -10.35529 -10.14199 -9.59915 -9.22639 -8.16937 -7.96058 -7.48803 -7.07100 -7.02926 -4.53143 2.16947 2.22826 2.92252 2.97939 3.04067 3.05141 3.07165 3.44687 3.73009 3.77256 3.87223 4.29656 4.66348 4.88545 4.94156 5.10242 5.19950 5.35096 5.45265 5.54788 5.67065 5.82485 5.90064 5.94770 6.01639 6.04233 6.14998 6.24797 6.29124 6.41223 6.51954 6.64123 6.81699 6.91968 7.14311 7.17539 7.32122 7.44632 7.70511 7.93114 8.20016 8.33180 8.54051 8.67173 9.39073 9.88147 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.004903 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.818714 B = 5709.231309 C = 6924.560683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 H 0.062 0.938 4 C -0.130 4.130 5 C -0.102 4.102 6 C -0.096 4.096 7 H 0.112 0.888 8 C 0.491 3.509 9 O -0.523 6.523 10 O -0.503 6.503 11 C 0.112 3.888 12 N -0.620 5.620 13 C 0.621 3.379 14 O -0.540 6.540 15 C -0.444 4.444 16 S -0.020 6.020 17 C -0.217 4.217 18 C -0.098 4.098 19 C 0.144 3.856 20 C -0.391 4.391 21 H 0.089 0.911 22 C 0.073 3.927 23 N -0.780 5.780 24 Si 0.920 3.080 25 H -0.256 1.256 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 0.475 7.294 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.168 4.168 5 C -0.139 4.139 6 C -0.116 4.116 7 H 0.130 0.870 8 C 0.334 3.666 9 O -0.411 6.411 10 O -0.314 6.314 11 C -0.013 4.013 12 N -0.355 5.355 13 C 0.415 3.585 14 O -0.420 6.420 15 C -0.562 4.562 16 S 0.236 5.764 17 C -0.351 4.351 18 C -0.130 4.130 19 C 0.133 3.867 20 C -0.423 4.423 21 H 0.107 0.893 22 C -0.148 4.148 23 N -0.405 5.405 24 Si 0.744 3.256 25 H -0.179 1.179 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.966 -0.048 8.493 10.984 hybrid contribution -0.160 0.972 -1.538 1.826 sum 6.806 0.924 6.955 9.775 Atomic orbital electron populations 1.22148 0.92602 1.04258 0.99948 1.21149 0.95958 0.94730 0.84185 0.91972 1.22043 0.94638 1.01849 0.98298 1.21429 0.96186 1.00404 0.95910 1.21423 0.87392 1.03433 0.99388 0.87026 1.23376 0.91860 0.73613 0.77787 1.90687 1.65177 1.46063 1.39222 1.84658 1.28726 1.69015 1.48981 1.21799 0.81833 1.00285 0.97431 1.48087 1.06225 1.59979 1.21217 1.16979 0.84381 0.77476 0.79622 1.90728 1.16820 1.58767 1.75641 1.22585 1.25884 1.12104 0.95648 1.82877 1.53604 1.33520 1.06361 1.25066 1.07670 1.05298 0.97020 1.21709 0.95056 0.94812 1.01422 1.17812 0.89940 0.90680 0.88262 1.19488 1.19260 1.03882 0.99646 0.89265 1.26189 0.95077 0.97281 0.96242 1.69663 1.32435 1.24926 1.13439 0.86037 0.79133 0.81313 0.79142 1.17940 1.19472 1.19490 0.91377 0.94893 0.90270 0.90575 0.91305 0.90993 0.91080 0.73613 0.85686 0.92267 0.84571 0.83723 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.61 37.15 0.28 -1.97 16 2 C 0.14 2.26 3.49 -67.60 -0.24 2.03 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.66 5.37 -26.61 -0.14 -1.80 16 5 C -0.10 -1.28 4.46 -26.69 -0.12 -1.40 16 6 C -0.10 -1.33 2.76 -91.88 -0.25 -1.59 16 7 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 8 C 0.49 6.57 7.63 36.00 0.27 6.85 16 9 O -0.52 -7.94 16.74 -18.75 -0.31 -8.25 16 10 O -0.50 -5.76 13.35 -39.26 -0.52 -6.28 16 11 C 0.11 1.83 5.23 -3.93 -0.02 1.81 16 12 N -0.62 -11.54 2.98 -167.17 -0.50 -12.03 16 13 C 0.62 14.33 6.92 -13.05 -0.09 14.24 16 14 O -0.54 -13.72 11.80 5.14 0.06 -13.66 16 15 C -0.44 -10.66 5.44 -35.88 -0.20 -10.85 16 16 S -0.02 -0.41 20.29 -107.50 -2.18 -2.59 16 17 C -0.22 -4.55 11.07 28.86 0.32 -4.23 16 18 C -0.10 -2.31 9.06 -39.13 -0.35 -2.66 16 19 C 0.14 3.69 5.69 -106.21 -0.60 3.08 16 20 C -0.39 -10.18 8.54 -37.94 -0.32 -10.50 16 21 H 0.09 2.40 7.32 -52.49 -0.38 2.01 16 22 C 0.07 1.75 5.37 -17.28 -0.09 1.66 16 23 N -0.78 -18.64 10.79 55.57 0.60 -18.04 16 24 Si 0.92 18.10 29.58 -169.99 -5.03 13.08 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 H 0.07 1.31 6.81 -51.93 -0.35 0.96 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.54 6.68 -51.93 -0.35 1.20 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.41 2.70 9.10 45.56 0.41 3.12 16 36 H 0.13 2.27 4.04 -32.73 -0.13 2.13 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.15 3.42 6.32 -52.48 -0.33 3.09 16 40 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -29.58 337.16 -8.43 -38.00 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.07 Total: 10.03 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.56 Total: -5.33 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.10 Total: -30.08 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.78 Total: -28.19 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.18 Total: -2.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.58 -8.43 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603387862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.569 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds