Wall clock time and date at job start Tue Mar 31 2020 14:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37098 * 120.00383 * 2 1 4 4 H 1.07999 * 119.99870 * 204.79821 * 3 2 1 5 5 C 1.38948 * 119.99784 * 24.79847 * 3 2 1 6 6 N 1.31419 * 119.99979 * 6.74497 * 5 3 2 7 7 Si 1.86800 * 120.00092 * 186.74381 * 5 3 2 8 8 H 1.48495 * 109.47044 * 60.00304 * 7 5 3 9 9 H 1.48504 * 109.47170 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47288 * 300.00116 * 7 5 3 11 11 C 1.34778 * 119.99648 * 180.02562 * 2 1 3 12 12 O 1.21297 * 119.99612 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00112 * 359.97438 * 11 2 1 14 14 F 1.39898 * 109.47007 * 79.54191 * 13 11 2 15 15 F 1.39896 * 109.47420 * 319.53840 * 13 11 2 16 16 C 1.50706 * 109.46931 * 199.53614 * 13 11 2 17 17 C 1.38044 * 120.06101 * 246.63486 * 16 13 11 18 18 C 1.38288 * 120.11984 * 180.02562 * 17 16 13 19 19 C 1.38337 * 120.23742 * 0.02562 * 18 17 16 20 20 C 1.38009 * 120.11545 * 359.97438 * 19 18 17 21 21 C 1.39282 * 120.05710 * 66.63614 * 16 13 11 22 22 C 1.48463 * 120.11921 * 359.95295 * 21 16 13 23 23 N 1.34045 * 126.67027 * 359.71187 * 22 21 16 24 24 N 1.28991 * 107.26461 * 179.83512 * 23 22 21 25 25 N 1.28730 * 108.94438 * 0.42978 * 24 23 22 26 26 H 0.96999 * 125.34561 * 179.74366 * 25 24 23 27 27 N 1.28873 * 109.31529 * 359.72822 * 25 24 23 28 28 H 1.08999 * 109.47135 * 272.33604 * 1 2 3 29 29 H 1.08998 * 109.47124 * 32.32952 * 1 2 3 30 30 H 1.08997 * 109.47686 * 152.33563 * 1 2 3 31 31 H 0.96998 * 120.00246 * 180.02562 * 6 5 3 32 32 H 1.08005 * 119.93879 * 0.04576 * 17 16 13 33 33 H 1.08002 * 119.88333 * 180.27151 * 18 17 16 34 34 H 1.07995 * 119.94223 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.05661 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1558 1.2303 -0.3923 5 6 1.5519 2.3351 0.5047 6 7 0.3837 2.2588 1.1018 7 14 2.4077 3.9868 0.3347 8 1 2.6128 4.2922 -1.1040 9 1 1.5679 5.0452 0.9510 10 1 3.7228 3.9361 1.0223 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 9 0.9442 -2.7561 -1.2975 15 9 0.2833 -2.3746 0.8558 16 6 2.2939 -3.5770 0.4740 17 6 2.6757 -4.5795 -0.3948 18 6 3.5091 -5.5941 0.0395 19 6 3.9641 -5.6107 1.3458 20 6 3.5884 -4.6134 2.2227 21 6 2.7499 -3.5883 1.7900 22 6 2.3433 -2.5123 2.7286 23 7 1.5507 -1.4670 2.4531 24 7 1.4433 -0.7724 3.5348 25 7 2.1382 -1.3330 4.4621 26 1 2.2277 -1.0068 5.3712 27 7 2.6961 -2.3959 3.9933 28 1 -0.3633 0.0419 1.0268 29 1 -0.3633 0.8683 -0.5496 30 1 -0.3634 -0.9101 -0.4771 31 1 -0.0344 3.0601 1.4538 32 1 2.3233 -4.5713 -1.4157 33 1 3.8090 -6.3741 -0.6447 34 1 4.6150 -6.4051 1.6798 35 1 3.9445 -4.6271 3.2422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604708413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:54 Heat of formation + Delta-G solvation = 70.148073 kcal Electronic energy + Delta-G solvation = -29047.725935 eV Core-core repulsion = 24722.079236 eV Total energy + Delta-G solvation = -4325.646698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.49077 -46.40239 -43.88653 -39.21062 -37.94570 -34.72796 -33.92525 -33.15638 -31.67256 -31.52674 -30.31581 -27.03549 -26.05003 -24.56725 -24.24557 -23.63286 -21.77408 -21.29953 -19.58741 -18.70616 -17.53408 -17.09567 -16.68156 -16.59725 -16.46099 -15.95795 -14.99521 -14.64744 -14.60235 -14.13489 -13.85032 -13.71867 -13.40551 -13.23878 -13.00292 -12.82785 -12.65020 -12.41926 -11.91252 -11.78125 -11.50701 -11.31967 -11.22916 -11.03198 -10.91594 -10.70478 -10.58360 -10.52925 -10.42664 -10.35398 -10.22963 -8.95773 -8.90273 -8.50427 -8.39662 -7.59524 -6.25137 -3.84844 0.88851 1.35742 1.74772 2.68621 2.78804 3.17741 3.24326 3.27865 3.66189 3.80254 3.93885 4.11004 4.22863 4.57296 4.65885 4.93352 5.02173 5.09592 5.18031 5.31341 5.54159 5.62397 5.71187 5.81498 5.86073 6.01874 6.06651 6.40872 6.46877 6.54975 6.56029 6.84180 6.89778 7.09639 7.53084 7.58701 8.11550 8.47919 8.72458 9.15491 9.40732 9.92311 10.74733 Molecular weight = 323.09amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.006075 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.425448 B = 4608.018825 C = 5331.992838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.398 5.398 3 C -0.306 4.306 4 H 0.096 0.904 5 C 0.039 3.961 6 N -0.860 5.860 7 Si 0.926 3.074 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.275 1.275 11 C 0.424 3.576 12 O -0.573 6.573 13 C 0.332 3.668 14 F -0.196 7.196 15 F -0.170 7.170 16 C -0.084 4.084 17 C -0.089 4.089 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.088 4.088 21 C 0.034 3.966 22 C 0.202 3.798 23 N -0.220 5.220 24 N -0.024 5.024 25 N -0.242 5.242 26 H 0.469 0.531 27 N -0.303 5.303 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -12.269 4.300 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.112 5.112 3 C -0.434 4.434 4 H 0.114 0.886 5 C -0.166 4.166 6 N -0.498 5.498 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.200 1.200 11 C 0.207 3.793 12 O -0.459 6.459 13 C 0.291 3.709 14 F -0.177 7.177 15 F -0.151 7.151 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.129 4.129 20 C -0.108 4.108 21 C 0.031 3.969 22 C -0.078 4.078 23 N -0.093 5.093 24 N -0.020 5.020 25 N -0.086 5.086 26 H 0.322 0.678 27 N -0.155 5.155 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.433 -11.499 4.569 12.456 hybrid contribution 0.363 0.769 0.454 0.964 sum 1.797 -10.731 5.022 11.983 Atomic orbital electron populations 1.21733 0.80317 0.98375 1.02821 1.43323 1.05985 1.03829 1.58083 1.19571 1.00733 0.83925 1.39208 0.88579 1.25375 0.96314 0.99833 0.95124 1.70034 1.15470 1.29518 1.34733 0.86015 0.79059 0.80933 0.78725 1.19794 1.20822 1.20020 1.19483 0.87961 0.83838 0.87975 1.90553 1.12594 1.85270 1.57439 1.19916 0.82322 0.95451 0.73182 1.92956 1.90719 1.94823 1.39162 1.93057 1.55181 1.96931 1.69918 1.19924 0.99508 0.95610 0.93715 1.20922 0.97108 0.92899 0.99750 1.21199 0.97047 0.98297 0.96091 1.21111 0.99790 0.98458 0.93563 1.21075 0.96219 0.92966 1.00551 1.16859 0.98336 0.91797 0.89896 1.23523 0.97963 0.96904 0.89420 1.76506 1.14993 1.02074 1.15703 1.79193 1.11716 1.18735 0.92347 1.47759 1.30782 1.14979 1.15049 0.67794 1.74666 1.21457 1.07219 1.12167 0.90780 0.91649 0.95620 0.92149 0.84382 0.85097 0.85090 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.75 7.44 59.84 0.44 3.20 16 2 N -0.40 -10.76 2.69 -122.20 -0.33 -11.09 16 3 C -0.31 -8.71 9.26 -14.93 -0.14 -8.85 16 4 H 0.10 2.85 7.43 -52.49 -0.39 2.46 16 5 C 0.04 1.04 5.20 -17.47 -0.09 0.95 16 6 N -0.86 -22.89 10.51 55.50 0.58 -22.30 16 7 Si 0.93 20.94 29.56 -169.99 -5.02 15.91 16 8 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.42 11.11 4.46 -10.98 -0.05 11.06 16 12 O -0.57 -16.45 15.74 5.54 0.09 -16.36 16 13 C 0.33 7.39 1.26 -29.03 -0.04 7.35 16 14 F -0.20 -4.09 15.18 2.25 0.03 -4.05 16 15 F -0.17 -3.79 11.34 2.25 0.03 -3.77 16 16 C -0.08 -1.64 4.45 -104.30 -0.46 -2.11 16 17 C -0.09 -1.40 9.42 -39.63 -0.37 -1.77 16 18 C -0.11 -1.32 10.04 -39.53 -0.40 -1.72 16 19 C -0.11 -1.32 10.03 -39.63 -0.40 -1.72 16 20 C -0.09 -1.28 9.70 -39.26 -0.38 -1.66 16 21 C 0.03 0.65 5.60 -104.89 -0.59 0.06 16 22 C 0.20 4.10 7.32 -156.31 -1.14 2.96 16 23 N -0.22 -5.00 6.36 32.15 0.20 -4.79 16 24 N -0.02 -0.50 13.47 60.35 0.81 0.31 16 25 N -0.24 -3.82 7.90 60.35 0.48 -3.35 16 26 H 0.47 4.77 8.96 -340.37 -3.05 1.72 16 27 N -0.30 -5.24 12.08 32.17 0.39 -4.85 16 28 H 0.07 1.92 7.45 -51.93 -0.39 1.54 16 29 H 0.06 1.65 7.10 -51.93 -0.37 1.28 16 30 H 0.03 0.58 5.67 -51.93 -0.29 0.29 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.14 1.98 7.18 -52.48 -0.38 1.60 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.72 7.88 -52.49 -0.41 1.30 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -34.37 306.43 -7.00 -41.37 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.26 Total: 0.60 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -3.62 Total: 7.75 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 2.14 Total: -46.08 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.06 Total: -7.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.37 -7.00 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.520 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds