Wall clock time and date at job start Tue Mar 31 2020 13:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47314 * 2 1 4 4 S 1.81408 * 109.46649 * 240.00198 * 2 1 3 5 5 C 1.81397 * 102.99782 * 65.00327 * 4 2 1 6 6 C 1.50707 * 109.47047 * 179.97438 * 5 4 2 7 7 O 1.20833 * 119.99718 * 359.72632 * 6 5 4 8 8 O 1.34223 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47083 * 120.00335 * 2 1 3 10 10 O 1.21292 * 119.99688 * 99.99998 * 9 2 1 11 11 N 1.34771 * 120.00299 * 279.99933 * 9 2 1 12 12 C 1.46501 * 119.99679 * 354.41076 * 11 9 2 13 13 C 1.50701 * 109.46850 * 90.00440 * 12 11 9 14 14 H 1.08001 * 120.00262 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99745 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99917 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00253 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46891 * 90.00053 * 17 15 13 19 19 H 1.48499 * 109.47199 * 210.00107 * 17 15 13 20 20 H 1.48500 * 109.47132 * 330.00474 * 17 15 13 21 21 C 1.39923 * 120.00513 * 174.41644 * 11 9 2 22 22 C 1.38873 * 120.06778 * 303.70637 * 21 11 9 23 23 C 1.38112 * 119.92871 * 179.76539 * 22 21 11 24 24 C 1.38281 * 120.07196 * 0.48368 * 23 22 21 25 25 C 1.38284 * 120.13762 * 359.76202 * 24 23 22 26 26 C 1.38111 * 120.07475 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47296 * 59.99388 * 1 2 3 28 28 H 1.08998 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47176 * 299.99937 * 1 2 3 30 30 H 1.08996 * 109.47871 * 60.00023 * 5 4 2 31 31 H 1.09004 * 109.47362 * 299.99281 * 5 4 2 32 32 H 0.96696 * 117.00186 * 180.02562 * 8 6 5 33 33 H 1.08996 * 109.46962 * 210.00209 * 12 11 9 34 34 H 1.08999 * 109.47216 * 330.00403 * 12 11 9 35 35 H 0.97008 * 120.00077 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.03416 * 359.96666 * 22 21 11 37 37 H 1.08004 * 119.96592 * 180.24518 * 23 22 21 38 38 H 1.07997 * 119.93081 * 179.74559 * 24 23 22 39 39 H 1.08001 * 119.96289 * 179.97438 * 25 24 23 40 40 H 1.07996 * 120.03955 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8551 -1.4813 5 6 1.5663 0.2154 -2.8309 6 6 1.9982 -0.3687 -4.1513 7 8 2.6293 -1.3988 -4.1786 8 8 1.6862 0.2577 -5.2966 9 6 2.0323 -0.7105 1.2304 10 8 2.4064 -1.8618 1.1556 11 7 2.0659 -0.0666 2.4139 12 6 1.7310 1.3580 2.4824 13 6 0.2520 1.5151 2.7249 14 1 -0.3759 0.6413 2.8182 15 6 -0.2999 2.7745 2.8267 16 7 -1.5906 2.9117 3.0388 17 14 0.7858 4.2860 2.6646 18 1 0.8488 4.6997 1.2398 19 1 0.2186 5.3924 3.4766 20 1 2.1532 3.9675 3.1484 21 6 2.4207 -0.7586 3.5771 22 6 1.7156 -1.8943 3.9535 23 6 2.0714 -2.5779 5.0996 24 6 3.1220 -2.1269 5.8775 25 6 3.8227 -0.9935 5.5081 26 6 3.4748 -0.3078 4.3608 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.0001 1.2086 -2.7142 31 1 0.4791 0.2883 -2.8037 32 1 1.9845 -0.1554 -6.1184 33 1 2.2844 1.8224 3.2986 34 1 1.9982 1.8397 1.5419 35 1 -1.9789 3.7978 3.1100 36 1 0.8921 -2.2444 3.3488 37 1 1.5260 -3.4635 5.3908 38 1 3.3956 -2.6609 6.7755 39 1 4.6425 -0.6435 6.1180 40 1 4.0222 0.5775 4.0731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609805014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:44 Heat of formation + Delta-G solvation = -83.911002 kcal Electronic energy + Delta-G solvation = -24899.758674 eV Core-core repulsion = 21192.519452 eV Total energy + Delta-G solvation = -3707.239222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31080 -40.14084 -38.07982 -36.31604 -35.34757 -33.04745 -32.58473 -30.59307 -30.47846 -29.56054 -27.83764 -24.47432 -23.14261 -22.36698 -22.09328 -21.69844 -19.08287 -18.30847 -17.35725 -17.17901 -16.92765 -16.37806 -16.22372 -15.94473 -15.44808 -15.17837 -14.32523 -14.10671 -13.93390 -13.75436 -13.49104 -13.32133 -13.10452 -13.00724 -12.72714 -12.34377 -12.18719 -11.96519 -11.73747 -11.63738 -11.37547 -11.36250 -11.16511 -10.89868 -10.80504 -10.77047 -10.45676 -9.84461 -9.57374 -9.40022 -8.93738 -8.84716 -8.56765 -7.65695 -7.51996 -6.37784 -4.39603 1.28515 1.66700 1.77328 2.00133 2.48517 2.92008 3.03252 3.04284 3.13707 3.16082 3.55315 4.11652 4.16432 4.80123 4.87774 4.90794 5.01239 5.11999 5.19821 5.25181 5.27665 5.42391 5.43974 5.74725 5.89252 5.91552 6.02407 6.22884 6.25227 6.28065 6.36757 6.44022 6.70119 6.83345 6.84180 6.93998 7.04003 7.23505 7.45757 7.66234 7.79343 8.17672 8.57570 8.66517 9.19179 10.73460 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.004777 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.393121 B = 5860.489084 C = 7904.695588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.090 4.090 3 H 0.113 0.887 4 S -0.128 6.128 5 C -0.123 4.123 6 C 0.499 3.501 7 O -0.493 6.493 8 O -0.513 6.513 9 C 0.545 3.455 10 O -0.530 6.530 11 N -0.546 5.546 12 C 0.205 3.795 13 C -0.543 4.543 14 H 0.086 0.914 15 C 0.082 3.918 16 N -0.882 5.882 17 Si 0.866 3.134 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.176 3.824 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.138 4.138 25 C -0.110 4.110 26 C -0.131 4.131 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.413 0.587 33 H 0.041 0.959 34 H 0.033 0.967 35 H 0.269 0.731 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -2.350 -6.046 9.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.222 4.222 3 H 0.131 0.869 4 S 0.098 5.902 5 C -0.272 4.272 6 C 0.339 3.661 7 O -0.379 6.379 8 O -0.326 6.326 9 C 0.332 3.668 10 O -0.406 6.406 11 N -0.272 5.272 12 C 0.085 3.915 13 C -0.581 4.581 14 H 0.103 0.897 15 C -0.123 4.123 16 N -0.518 5.518 17 Si 0.692 3.308 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.188 1.188 21 C 0.084 3.916 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.156 4.156 25 C -0.129 4.129 26 C -0.151 4.151 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.272 0.728 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.909 -3.824 -5.828 9.814 hybrid contribution -0.244 2.122 -0.508 2.196 sum 6.664 -1.702 -6.336 9.352 Atomic orbital electron populations 1.22375 0.89597 1.03654 1.06407 1.23449 1.02257 1.02872 0.93598 0.86933 1.87803 1.73479 1.33023 0.95910 1.23140 1.07318 1.04440 0.92268 1.22315 0.76296 0.82080 0.85375 1.90785 1.36449 1.23304 1.87388 1.84496 1.75048 1.55836 1.17236 1.19530 0.77406 0.86212 0.83653 1.90709 1.47362 1.17202 1.85366 1.45489 1.65126 1.12284 1.04326 1.20055 0.98124 0.75405 0.97924 1.21228 0.90660 0.94636 1.51539 0.89651 1.24824 0.94840 0.98619 0.94039 1.69870 1.10761 1.23914 1.47283 0.86999 0.81458 0.83380 0.78936 1.19736 1.20616 1.18803 1.17558 0.93444 0.93031 0.87539 1.21131 0.99009 0.95858 0.96633 1.20945 0.97480 0.99588 0.94728 1.21019 0.97144 0.97384 1.00048 1.20879 0.99901 0.95705 0.96427 1.21067 0.96502 1.01164 0.96386 0.92444 0.91901 0.85586 0.85970 0.85645 0.72769 0.94058 0.94879 0.92097 0.86128 0.86165 0.86440 0.86175 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.04 37.16 0.34 -2.42 16 2 C -0.09 -1.56 2.49 -27.88 -0.07 -1.63 16 3 H 0.11 1.82 6.20 -51.93 -0.32 1.50 16 4 S -0.13 -2.11 19.54 -107.50 -2.10 -4.21 16 5 C -0.12 -1.47 6.23 36.01 0.22 -1.25 16 6 C 0.50 6.06 8.35 36.01 0.30 6.36 16 7 O -0.49 -7.73 16.62 -18.76 -0.31 -8.04 16 8 O -0.51 -4.49 13.42 -39.24 -0.53 -5.02 16 9 C 0.54 10.98 6.62 -10.99 -0.07 10.91 16 10 O -0.53 -11.87 15.40 5.55 0.09 -11.78 16 11 N -0.55 -11.01 2.56 -114.74 -0.29 -11.31 16 12 C 0.20 4.24 3.90 -5.19 -0.02 4.22 16 13 C -0.54 -12.98 7.43 -34.44 -0.26 -13.24 16 14 H 0.09 2.29 7.44 -52.49 -0.39 1.90 16 15 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.88 -23.72 13.96 55.43 0.77 -22.94 16 17 Si 0.87 18.37 27.47 -169.99 -4.67 13.70 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 21 C 0.18 3.44 5.18 -83.69 -0.43 3.01 16 22 C -0.11 -1.99 8.93 -39.39 -0.35 -2.34 16 23 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 24 C -0.14 -1.95 10.04 -39.55 -0.40 -2.35 16 25 C -0.11 -1.62 10.04 -39.61 -0.40 -2.02 16 26 C -0.13 -2.25 9.31 -39.39 -0.37 -2.62 16 27 H 0.06 0.82 6.92 -51.93 -0.36 0.46 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.13 2.55 4.48 -51.93 -0.23 2.31 16 30 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.13 1.30 7.14 -51.92 -0.37 0.93 16 32 H 0.41 1.79 9.10 45.56 0.41 2.20 16 33 H 0.04 0.86 6.36 -51.93 -0.33 0.53 16 34 H 0.03 0.64 5.45 -51.93 -0.28 0.36 16 35 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.12 2.33 8.04 -52.48 -0.42 1.91 16 37 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.92 7.78 -52.49 -0.41 1.52 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -31.43 350.46 -7.75 -39.18 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.98 Total: 8.68 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.00 Total: -3.54 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.48 Total: -34.25 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.75 Total: -24.84 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.67 Total: 13.70 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.10 Total: -4.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.43 -7.75 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609805014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.732 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds