Wall clock time and date at job start Tue Mar 31 2020 13:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47314 * 2 1 4 4 S 1.81408 * 109.46649 * 240.00198 * 2 1 3 5 5 C 1.81397 * 102.99782 * 65.00327 * 4 2 1 6 6 C 1.50707 * 109.47047 * 179.97438 * 5 4 2 7 7 O 1.20833 * 119.99718 * 359.72632 * 6 5 4 8 8 O 1.34223 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47083 * 120.00335 * 2 1 3 10 10 O 1.21292 * 119.99688 * 99.99998 * 9 2 1 11 11 N 1.34771 * 120.00299 * 279.99933 * 9 2 1 12 12 C 1.46501 * 119.99679 * 354.41076 * 11 9 2 13 13 C 1.50701 * 109.46850 * 90.00440 * 12 11 9 14 14 H 1.08001 * 120.00262 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99745 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99917 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00253 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46891 * 90.00053 * 17 15 13 19 19 H 1.48499 * 109.47199 * 210.00107 * 17 15 13 20 20 H 1.48500 * 109.47132 * 330.00474 * 17 15 13 21 21 C 1.39923 * 120.00513 * 174.41644 * 11 9 2 22 22 C 1.38873 * 120.06778 * 303.70637 * 21 11 9 23 23 C 1.38112 * 119.92871 * 179.76539 * 22 21 11 24 24 C 1.38281 * 120.07196 * 0.48368 * 23 22 21 25 25 C 1.38284 * 120.13762 * 359.76202 * 24 23 22 26 26 C 1.38111 * 120.07475 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47296 * 59.99388 * 1 2 3 28 28 H 1.08998 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47176 * 299.99937 * 1 2 3 30 30 H 1.08996 * 109.47871 * 60.00023 * 5 4 2 31 31 H 1.09004 * 109.47362 * 299.99281 * 5 4 2 32 32 H 0.96696 * 117.00186 * 180.02562 * 8 6 5 33 33 H 1.08996 * 109.46962 * 210.00209 * 12 11 9 34 34 H 1.08999 * 109.47216 * 330.00403 * 12 11 9 35 35 H 0.97008 * 120.00077 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.03416 * 359.96666 * 22 21 11 37 37 H 1.08004 * 119.96592 * 180.24518 * 23 22 21 38 38 H 1.07997 * 119.93081 * 179.74559 * 24 23 22 39 39 H 1.08001 * 119.96289 * 179.97438 * 25 24 23 40 40 H 1.07996 * 120.03955 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8551 -1.4813 5 6 1.5663 0.2154 -2.8309 6 6 1.9982 -0.3687 -4.1513 7 8 2.6293 -1.3988 -4.1786 8 8 1.6862 0.2577 -5.2966 9 6 2.0323 -0.7105 1.2304 10 8 2.4064 -1.8618 1.1556 11 7 2.0659 -0.0666 2.4139 12 6 1.7310 1.3580 2.4824 13 6 0.2520 1.5151 2.7249 14 1 -0.3759 0.6413 2.8182 15 6 -0.2999 2.7745 2.8267 16 7 -1.5906 2.9117 3.0388 17 14 0.7858 4.2860 2.6646 18 1 0.8488 4.6997 1.2398 19 1 0.2186 5.3924 3.4766 20 1 2.1532 3.9675 3.1484 21 6 2.4207 -0.7586 3.5771 22 6 1.7156 -1.8943 3.9535 23 6 2.0714 -2.5779 5.0996 24 6 3.1220 -2.1269 5.8775 25 6 3.8227 -0.9935 5.5081 26 6 3.4748 -0.3078 4.3608 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.0001 1.2086 -2.7142 31 1 0.4791 0.2883 -2.8037 32 1 1.9845 -0.1554 -6.1184 33 1 2.2844 1.8224 3.2986 34 1 1.9982 1.8397 1.5419 35 1 -1.9789 3.7978 3.1100 36 1 0.8921 -2.2444 3.3488 37 1 1.5260 -3.4635 5.3908 38 1 3.3956 -2.6609 6.7755 39 1 4.6425 -0.6435 6.1180 40 1 4.0222 0.5775 4.0731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609805014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:43 Heat of formation + Delta-G solvation = -103.536665 kcal Electronic energy + Delta-G solvation = -24900.609707 eV Core-core repulsion = 21192.519452 eV Total energy + Delta-G solvation = -3708.090255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64554 -41.21210 -39.42770 -37.18923 -36.94291 -34.66954 -34.19201 -31.85723 -31.50128 -30.97626 -29.49457 -25.89067 -24.81016 -23.58459 -23.24552 -22.95748 -20.48714 -19.21769 -19.12366 -18.68303 -18.23910 -17.67880 -17.18553 -17.08668 -16.73280 -16.70335 -15.97172 -15.39891 -15.35329 -15.18385 -14.67466 -14.48487 -14.31884 -14.23357 -14.14749 -13.83365 -13.57324 -13.39744 -13.26819 -12.84634 -12.72680 -12.61571 -12.52770 -12.46792 -12.15689 -11.98698 -11.80864 -11.64642 -10.96630 -10.93478 -10.67464 -10.38786 -9.84065 -9.10542 -8.80793 -8.28042 -6.33975 0.10667 0.36626 0.49816 1.07533 1.27392 1.39554 1.44087 1.50435 1.52907 2.03743 2.11222 2.34681 2.87686 3.04447 3.42989 3.80985 3.94826 3.99565 4.06180 4.08836 4.16464 4.27464 4.28711 4.44562 4.57503 4.60933 4.69729 4.74256 4.81325 4.86239 5.11203 5.36389 5.43146 5.45426 5.50954 5.51563 5.59887 5.70779 6.08275 6.17615 6.40394 6.67454 6.89273 7.05503 7.28498 8.86643 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.004777 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.393121 B = 5860.489084 C = 7904.695588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 H 0.127 0.873 4 S -0.176 6.176 5 C -0.113 4.113 6 C 0.509 3.491 7 O -0.536 6.536 8 O -0.500 6.500 9 C 0.536 3.464 10 O -0.560 6.560 11 N -0.547 5.547 12 C 0.211 3.789 13 C -0.530 4.530 14 H 0.040 0.960 15 C 0.031 3.969 16 N -0.933 5.933 17 Si 0.927 3.073 18 H -0.254 1.254 19 H -0.289 1.289 20 H -0.244 1.244 21 C 0.136 3.864 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.434 0.566 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.269 0.731 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.251 -0.927 -6.173 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.211 4.211 3 H 0.145 0.855 4 S 0.050 5.950 5 C -0.261 4.261 6 C 0.350 3.650 7 O -0.426 6.426 8 O -0.314 6.314 9 C 0.325 3.675 10 O -0.439 6.439 11 N -0.273 5.273 12 C 0.091 3.909 13 C -0.569 4.569 14 H 0.058 0.942 15 C -0.169 4.169 16 N -0.572 5.572 17 Si 0.750 3.250 18 H -0.178 1.178 19 H -0.215 1.215 20 H -0.167 1.167 21 C 0.045 3.955 22 C -0.157 4.157 23 C -0.131 4.131 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.164 4.164 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.297 0.703 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.918 -2.400 -5.973 10.999 hybrid contribution -0.909 1.565 -0.475 1.871 sum 8.009 -0.835 -6.448 10.316 Atomic orbital electron populations 1.22236 0.89704 1.02960 1.06207 1.23308 1.01814 1.03098 0.92836 0.85499 1.88003 1.73996 1.35406 0.97644 1.23183 1.08571 1.04188 0.90152 1.22254 0.75275 0.81278 0.86151 1.90786 1.38567 1.25205 1.88006 1.84444 1.74354 1.55223 1.17386 1.20060 0.76874 0.86099 0.84492 1.90672 1.48802 1.18527 1.85920 1.45507 1.64895 1.12053 1.04846 1.19939 0.95740 0.76250 0.98992 1.21229 0.91997 0.93156 1.50473 0.94161 1.25598 0.95899 1.01735 0.93717 1.70024 1.12980 1.24581 1.49578 0.86012 0.80275 0.78922 0.79760 1.17835 1.21488 1.16697 1.17970 0.95235 0.94043 0.88256 1.21167 0.99309 0.97022 0.98193 1.21289 0.98154 0.99988 0.93665 1.21512 0.95558 0.96994 1.00596 1.21373 1.00301 0.95084 0.95484 1.21329 0.96074 1.01957 0.97086 0.89310 0.92894 0.88842 0.83163 0.83591 0.70305 0.93438 0.92707 0.92199 0.88758 0.83869 0.82361 0.82331 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.04 71.98 0.65 -4.63 16 2 C -0.08 -2.75 2.49 29.85 0.07 -2.67 16 3 H 0.13 3.93 6.20 -2.40 -0.01 3.91 16 4 S -0.18 -5.77 19.54 -56.49 -1.10 -6.88 16 5 C -0.11 -2.42 6.23 71.24 0.44 -1.97 16 6 C 0.51 11.31 8.35 71.24 0.59 11.91 16 7 O -0.54 -16.40 16.62 21.94 0.36 -16.04 16 8 O -0.50 -7.24 13.42 -51.35 -0.69 -7.92 16 9 C 0.54 22.32 6.62 87.66 0.58 22.90 16 10 O -0.56 -26.30 15.40 -3.07 -0.05 -26.34 16 11 N -0.55 -22.64 2.56 -635.31 -1.63 -24.27 16 12 C 0.21 8.68 3.90 85.63 0.33 9.01 16 13 C -0.53 -26.09 7.43 25.60 0.19 -25.90 16 14 H 0.04 2.31 7.44 -2.91 -0.02 2.29 16 15 C 0.03 1.54 5.47 84.65 0.46 2.00 16 16 N -0.93 -51.69 13.96 21.45 0.30 -51.39 16 17 Si 0.93 36.82 27.47 68.60 1.88 38.70 16 18 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 19 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.24 -8.82 6.54 99.48 0.65 -8.17 16 21 C 0.14 5.44 5.18 38.15 0.20 5.64 16 22 C -0.14 -5.36 8.93 22.39 0.20 -5.16 16 23 C -0.11 -3.45 10.04 22.25 0.22 -3.22 16 24 C -0.13 -3.27 10.04 22.29 0.22 -3.05 16 25 C -0.10 -2.75 10.04 22.25 0.22 -2.53 16 26 C -0.14 -4.81 9.31 22.39 0.21 -4.61 16 27 H 0.09 2.44 6.92 -2.38 -0.02 2.43 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 3.95 4.48 -2.38 -0.01 3.94 16 30 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.15 2.57 7.14 -2.39 -0.02 2.55 16 32 H 0.43 2.51 9.10 -74.06 -0.67 1.83 16 33 H 0.05 1.91 6.36 -2.39 -0.02 1.89 16 34 H 0.06 2.02 5.45 -2.39 -0.01 2.01 16 35 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.09 4.03 8.04 -2.91 -0.02 4.01 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.13 3.96 7.78 -2.91 -0.02 3.94 16 Total: -1.00 -72.88 350.46 4.04 -68.84 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.36 Total: 27.59 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.61 Total: -2.29 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.33 Total: -75.66 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.37 Total: -50.31 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 1.88 Total: 38.70 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -1.10 Total: -6.88 kcal Total: -72.88 4.04 -68.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609805014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.695 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds