Wall clock time and date at job start Tue Mar 31 2020 14:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00485 * 3 2 1 6 6 H 1.48497 * 109.47111 * 60.00278 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47592 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47037 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99875 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00141 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47300 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46925 * 180.02562 * 16 15 13 18 18 O 1.21256 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.47090 * 119.99699 * 180.02562 * 17 16 15 20 20 C 1.39904 * 120.15563 * 359.72116 * 19 17 16 21 21 C 1.37820 * 119.83187 * 179.81385 * 20 19 17 22 22 C 1.38561 * 120.16027 * 0.44551 * 21 20 19 23 23 Cl 1.73607 * 119.83755 * 179.76749 * 22 21 20 24 24 C 1.38563 * 120.32315 * 359.78756 * 22 21 20 25 25 C 1.37812 * 120.15930 * 359.97438 * 24 22 21 26 26 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46923 * 60.00061 * 9 7 2 28 28 H 1.09004 * 109.46818 * 300.00611 * 9 7 2 29 29 H 1.08996 * 109.47261 * 59.99681 * 10 9 7 30 30 H 1.09000 * 109.46870 * 300.00070 * 10 9 7 31 31 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 32 32 H 1.09004 * 109.46733 * 300.00200 * 11 10 9 33 33 H 0.96999 * 120.00082 * 359.97438 * 12 11 10 34 34 H 1.09004 * 109.47043 * 59.99777 * 15 13 12 35 35 H 1.09004 * 109.47476 * 299.99851 * 15 13 12 36 36 H 1.09000 * 109.46497 * 60.00269 * 16 15 13 37 37 H 1.09000 * 109.47312 * 300.00049 * 16 15 13 38 38 H 1.07992 * 120.08379 * 0.02562 * 20 19 17 39 39 H 1.08004 * 119.91532 * 180.18712 * 21 20 19 40 40 H 1.07996 * 119.92009 * 179.97438 * 24 22 21 41 41 H 1.07999 * 120.08344 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0006 13 6 1.9828 -7.3713 -0.0015 14 8 0.7904 -7.5929 -0.0024 15 6 2.9620 -8.5168 -0.0014 16 6 2.1970 -9.8418 -0.0020 17 6 3.1763 -10.9873 -0.0013 18 8 4.3685 -10.7657 0.0000 19 6 2.6860 -12.3740 -0.0022 20 6 1.3112 -12.6333 0.0022 21 6 0.8591 -13.9353 -0.0025 22 6 1.7624 -14.9859 -0.0023 23 17 1.1837 -16.6227 -0.0022 24 6 3.1254 -14.7366 -0.0018 25 6 3.5921 -13.4399 -0.0020 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8905 31 1 0.8537 -5.0446 -0.8913 32 1 0.8531 -5.0450 0.8886 33 1 3.3858 -5.9234 -0.0002 34 1 3.5881 -8.4595 0.8890 35 1 3.5893 -8.4587 -0.8910 36 1 1.5707 -9.8992 -0.8922 37 1 1.5700 -9.8997 0.8878 38 1 0.6060 -11.8154 0.0059 39 1 -0.2020 -14.1370 -0.0022 40 1 3.8237 -15.5604 -0.0012 41 1 4.6547 -13.2470 -0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:48 Heat of formation + Delta-G solvation = -83.428147 kcal Electronic energy + Delta-G solvation = -22540.897939 eV Core-core repulsion = 18831.635949 eV Total energy + Delta-G solvation = -3709.261990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67670 -39.55525 -38.75363 -36.98275 -35.50229 -33.40875 -33.28084 -31.76019 -31.60725 -31.07114 -27.42358 -25.92000 -23.93918 -23.26712 -22.58270 -20.76327 -20.23165 -19.73747 -18.14076 -17.12923 -16.50599 -16.35078 -16.27779 -15.99593 -15.42961 -15.18299 -14.92477 -14.54713 -14.44511 -14.30577 -14.19099 -13.86557 -13.25777 -12.98736 -12.83532 -12.31395 -12.27832 -12.05615 -11.99631 -11.82573 -11.76039 -11.42615 -11.40239 -10.93327 -10.75759 -10.58799 -10.17641 -9.93228 -9.89211 -9.71378 -9.39555 -9.35587 -9.11966 -8.81497 -8.39126 -6.03587 -4.06663 -0.04237 0.67777 1.48770 1.83600 2.72758 3.10753 3.17591 3.28940 3.36603 3.40184 3.69503 4.11163 4.24089 4.40588 4.43151 4.62441 4.63583 4.80107 4.85336 4.98563 5.02858 5.31223 5.32415 5.34651 5.52866 5.53705 5.56495 5.64322 5.71539 5.73327 5.75412 6.07534 6.13642 6.45431 6.57396 6.80487 6.98102 7.05247 7.61752 7.66593 7.73822 7.95153 8.32650 8.37337 9.00243 9.57800 11.07705 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.046742 B = 0.001460 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.887105 B =19175.275346 C =19737.809324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.549 6.549 15 C -0.133 4.133 16 C -0.150 4.150 17 C 0.398 3.602 18 O -0.448 6.448 19 C -0.165 4.165 20 C -0.057 4.057 21 C -0.123 4.123 22 C -0.007 4.007 23 Cl -0.063 7.063 24 C -0.125 4.125 25 C -0.050 4.050 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -32.974 0.002 33.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.293 3.707 14 O -0.427 6.427 15 C -0.173 4.173 16 C -0.188 4.188 17 C 0.276 3.724 18 O -0.323 6.323 19 C -0.166 4.166 20 C -0.076 4.076 21 C -0.142 4.142 22 C -0.034 4.034 23 Cl -0.034 7.034 24 C -0.143 4.143 25 C -0.068 4.068 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.078 -33.020 0.002 33.408 hybrid contribution 0.705 0.851 0.000 1.105 sum 5.783 -32.168 0.002 32.684 Atomic orbital electron populations 1.69976 1.06062 1.26583 1.50643 1.25029 0.94855 0.99319 0.95253 0.86526 0.80062 0.83737 0.77606 1.19747 1.20998 1.20994 1.21244 0.93049 0.90938 1.50839 0.92578 1.19040 0.93865 0.90900 0.97658 1.21893 0.99773 0.93361 1.00920 1.21653 0.91897 0.85178 1.01972 1.46230 1.10944 1.05997 1.74419 1.20548 0.89569 0.84241 0.76306 1.90694 1.16934 1.84941 1.50140 1.21460 0.98198 0.92060 1.05621 1.21780 0.98676 0.91949 1.06385 1.22504 0.89655 0.89213 0.71049 1.90541 1.18690 1.87214 1.35891 1.20667 0.94377 0.95347 1.06222 1.21563 0.94726 0.96884 0.94392 1.21105 1.00254 0.91283 1.01550 1.21316 0.94159 0.86225 1.01712 1.98401 1.89010 1.19450 1.96546 1.21069 0.93616 0.97758 1.01898 1.21419 1.00697 0.90847 0.93824 0.92981 0.96264 0.96271 0.92697 0.92707 0.91757 0.91765 0.76646 0.88303 0.88297 0.87201 0.87207 0.83485 0.84040 0.84229 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.95 16 12 N -0.73 -9.83 5.56 -60.30 -0.33 -10.16 16 13 C 0.51 6.75 7.83 -10.99 -0.09 6.66 16 14 O -0.55 -9.22 15.98 5.56 0.09 -9.13 16 15 C -0.13 -1.25 4.99 -27.88 -0.14 -1.39 16 16 C -0.15 -1.22 3.60 -27.88 -0.10 -1.32 16 17 C 0.40 3.36 7.11 -30.72 -0.22 3.14 16 18 O -0.45 -4.89 15.97 5.58 0.09 -4.80 16 19 C -0.17 -1.21 5.87 -105.06 -0.62 -1.83 16 20 C -0.06 -0.34 9.47 -39.11 -0.37 -0.71 16 21 C -0.12 -0.72 9.81 -39.61 -0.39 -1.11 16 22 C -0.01 -0.05 6.33 -39.34 -0.25 -0.30 16 23 Cl -0.06 -0.39 28.95 -51.86 -1.50 -1.90 16 24 C -0.12 -0.76 9.81 -39.62 -0.39 -1.15 16 25 C -0.05 -0.34 9.60 -39.12 -0.38 -0.72 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.40 4.36 8.47 -40.82 -0.35 4.01 16 34 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.11 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.11 0.84 8.04 -51.93 -0.42 0.42 16 38 H 0.15 0.65 7.05 -52.49 -0.37 0.28 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.92 7.65 -52.49 -0.40 0.51 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -33.22 371.97 -9.70 -42.92 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.72 Total: -0.86 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.65 Total: -12.11 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.40 Total: -36.08 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.18 Total: -13.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.22 -9.70 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.507 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds