Wall clock time and date at job start Tue Mar 31 2020 14:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00485 * 3 2 1 6 6 H 1.48497 * 109.47111 * 60.00278 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47592 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47037 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99875 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00141 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47300 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46925 * 180.02562 * 16 15 13 18 18 O 1.21256 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.47090 * 119.99699 * 180.02562 * 17 16 15 20 20 C 1.39904 * 120.15563 * 359.72116 * 19 17 16 21 21 C 1.37820 * 119.83187 * 179.81385 * 20 19 17 22 22 C 1.38561 * 120.16027 * 0.44551 * 21 20 19 23 23 Cl 1.73607 * 119.83755 * 179.76749 * 22 21 20 24 24 C 1.38563 * 120.32315 * 359.78756 * 22 21 20 25 25 C 1.37812 * 120.15930 * 359.97438 * 24 22 21 26 26 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46923 * 60.00061 * 9 7 2 28 28 H 1.09004 * 109.46818 * 300.00611 * 9 7 2 29 29 H 1.08996 * 109.47261 * 59.99681 * 10 9 7 30 30 H 1.09000 * 109.46870 * 300.00070 * 10 9 7 31 31 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 32 32 H 1.09004 * 109.46733 * 300.00200 * 11 10 9 33 33 H 0.96999 * 120.00082 * 359.97438 * 12 11 10 34 34 H 1.09004 * 109.47043 * 59.99777 * 15 13 12 35 35 H 1.09004 * 109.47476 * 299.99851 * 15 13 12 36 36 H 1.09000 * 109.46497 * 60.00269 * 16 15 13 37 37 H 1.09000 * 109.47312 * 300.00049 * 16 15 13 38 38 H 1.07992 * 120.08379 * 0.02562 * 20 19 17 39 39 H 1.08004 * 119.91532 * 180.18712 * 21 20 19 40 40 H 1.07996 * 119.92009 * 179.97438 * 24 22 21 41 41 H 1.07999 * 120.08344 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0006 13 6 1.9828 -7.3713 -0.0015 14 8 0.7904 -7.5929 -0.0024 15 6 2.9620 -8.5168 -0.0014 16 6 2.1970 -9.8418 -0.0020 17 6 3.1763 -10.9873 -0.0013 18 8 4.3685 -10.7657 0.0000 19 6 2.6860 -12.3740 -0.0022 20 6 1.3112 -12.6333 0.0022 21 6 0.8591 -13.9353 -0.0025 22 6 1.7624 -14.9859 -0.0023 23 17 1.1837 -16.6227 -0.0022 24 6 3.1254 -14.7366 -0.0018 25 6 3.5921 -13.4399 -0.0020 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8905 31 1 0.8537 -5.0446 -0.8913 32 1 0.8531 -5.0450 0.8886 33 1 3.3858 -5.9234 -0.0002 34 1 3.5881 -8.4595 0.8890 35 1 3.5893 -8.4587 -0.8910 36 1 1.5707 -9.8992 -0.8922 37 1 1.5700 -9.8997 0.8878 38 1 0.6060 -11.8154 0.0059 39 1 -0.2020 -14.1370 -0.0022 40 1 3.8237 -15.5604 -0.0012 41 1 4.6547 -13.2470 -0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171594708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:48 Heat of formation + Delta-G solvation = -102.600399 kcal Electronic energy + Delta-G solvation = -22541.729310 eV Core-core repulsion = 18831.635949 eV Total energy + Delta-G solvation = -3710.093362 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34245 -40.56071 -39.38455 -37.47080 -36.98345 -35.17431 -34.14593 -33.01002 -32.14351 -32.06878 -28.91010 -27.06011 -25.02023 -24.15967 -23.46642 -22.29477 -21.23705 -20.59668 -18.79638 -18.52062 -17.90599 -17.15012 -17.05836 -16.68833 -16.67150 -16.36597 -16.32858 -15.54790 -15.42642 -15.19061 -14.64760 -14.50509 -14.48894 -14.12217 -13.96924 -13.75466 -13.36580 -13.33547 -12.91758 -12.76994 -12.56076 -12.54372 -12.50205 -12.33587 -12.15899 -11.86887 -11.67105 -11.58729 -11.22113 -10.89019 -10.77850 -10.55861 -10.17101 -10.06199 -9.86136 -8.19593 -6.30909 -0.57860 0.22061 1.00908 1.24817 1.41895 1.42210 1.55304 1.65959 2.18066 2.42668 2.60641 2.96081 3.14365 3.59402 3.72906 3.82247 4.00205 4.12985 4.13339 4.17482 4.23640 4.23796 4.36719 4.55508 4.56761 4.66867 4.86051 4.88854 4.96157 4.97848 5.02623 5.06103 5.10465 5.17656 5.23509 5.46409 5.54299 5.61490 5.71328 5.84621 6.22701 6.41820 6.60159 6.86876 7.27739 7.38879 8.92589 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.046742 B = 0.001460 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.887105 B =19175.275346 C =19737.809324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.718 5.718 13 C 0.508 3.492 14 O -0.585 6.585 15 C -0.123 4.123 16 C -0.149 4.149 17 C 0.408 3.592 18 O -0.477 6.477 19 C -0.179 4.179 20 C -0.054 4.054 21 C -0.127 4.127 22 C -0.014 4.014 23 Cl -0.063 7.063 24 C -0.127 4.127 25 C -0.056 4.056 26 H 0.263 0.737 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.415 0.585 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -33.649 0.003 34.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.370 5.370 13 C 0.296 3.704 14 O -0.466 6.466 15 C -0.163 4.163 16 C -0.186 4.186 17 C 0.288 3.712 18 O -0.354 6.354 19 C -0.180 4.180 20 C -0.072 4.072 21 C -0.145 4.145 22 C -0.041 4.041 23 Cl -0.034 7.034 24 C -0.145 4.145 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.252 0.748 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.588 -33.717 0.004 34.355 hybrid contribution 0.190 0.991 -0.001 1.009 sum 6.777 -32.727 0.003 33.421 Atomic orbital electron populations 1.70116 1.07897 1.27701 1.51744 1.26005 0.95740 1.03490 0.94778 0.85376 0.79193 0.78699 0.77622 1.18271 1.20587 1.20576 1.21720 0.93746 0.92087 1.50374 0.91624 1.18960 0.94480 0.92987 0.95117 1.21603 0.98444 0.92027 1.02047 1.21213 0.91993 0.85583 1.00688 1.46048 1.11218 1.05336 1.74416 1.21207 0.89686 0.84645 0.74865 1.90682 1.18824 1.85413 1.51672 1.21439 0.97329 0.90651 1.06881 1.21791 0.98608 0.91190 1.07045 1.22551 0.89099 0.89686 0.69857 1.90536 1.19686 1.87562 1.37612 1.20665 0.95088 0.94812 1.07434 1.21736 0.94434 0.97479 0.93599 1.21334 1.01088 0.91070 1.01026 1.21477 0.94481 0.86415 1.01685 1.98402 1.88994 1.19464 1.96532 1.21232 0.93904 0.97927 1.01447 1.21513 1.00842 0.91138 0.93985 0.92828 0.98888 0.98894 0.91465 0.91476 0.93169 0.93179 0.74790 0.86962 0.86956 0.86584 0.86584 0.81983 0.82493 0.82788 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 11 C 0.13 4.41 5.67 86.38 0.49 4.90 16 12 N -0.72 -18.44 5.56 -463.07 -2.57 -21.01 16 13 C 0.51 12.83 7.83 87.66 0.69 13.52 16 14 O -0.59 -19.32 15.98 -3.03 -0.05 -19.37 16 15 C -0.12 -2.06 4.99 29.85 0.15 -1.91 16 16 C -0.15 -2.17 3.60 29.85 0.11 -2.06 16 17 C 0.41 6.35 7.11 28.01 0.20 6.55 16 18 O -0.48 -9.84 15.97 -2.96 -0.05 -9.89 16 19 C -0.18 -2.41 5.87 -20.15 -0.12 -2.53 16 20 C -0.05 -0.57 9.47 22.57 0.21 -0.35 16 21 C -0.13 -1.29 9.81 22.25 0.22 -1.07 16 22 C -0.01 -0.16 6.33 22.42 0.14 -0.02 16 23 Cl -0.06 -0.71 28.95 -2.72 -0.08 -0.79 16 24 C -0.13 -1.39 9.81 22.25 0.22 -1.18 16 25 C -0.06 -0.72 9.60 22.57 0.22 -0.51 16 26 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 27 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.42 8.09 8.47 -92.71 -0.79 7.30 16 34 H 0.11 1.64 8.10 -2.38 -0.02 1.62 16 35 H 0.11 1.64 8.10 -2.39 -0.02 1.62 16 36 H 0.12 1.58 8.05 -2.39 -0.02 1.56 16 37 H 0.12 1.58 8.04 -2.39 -0.02 1.56 16 38 H 0.16 1.13 7.05 -2.91 -0.02 1.11 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.14 1.76 7.65 -2.91 -0.02 1.74 16 Total: -1.00 -71.71 371.97 3.35 -68.36 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.26 Total: 10.15 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 3.53 Total: -16.64 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -2.29 Total: -77.46 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.10 Total: -29.26 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -71.71 3.35 -68.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.245 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds